Wall clock time and date at job start Tue Mar 31 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48499 * 109.47387 * 240.00241 * 3 2 1 5 5 H 1.48501 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47126 * 120.00021 * 3 2 1 7 7 C 1.38812 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99855 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00196 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.64709 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83680 * 155.91454 * 10 9 7 12 12 C 1.55164 * 101.57930 * 37.00372 * 11 10 9 13 13 H 1.09002 * 110.71503 * 82.86615 * 12 11 10 14 14 O 1.42895 * 110.71994 * 205.95501 * 12 11 10 15 15 C 1.35960 * 117.00154 * 203.68861 * 14 12 11 16 16 C 1.38954 * 120.47236 * 4.24174 * 15 14 12 17 17 C 1.38756 * 118.39400 * 179.77941 * 16 15 14 18 18 Cl 1.73599 * 120.37811 * 180.24379 * 17 16 15 19 19 C 1.38259 * 119.24839 * 0.52312 * 17 16 15 20 20 N 1.31931 * 120.89013 * 359.71698 * 19 17 16 21 21 C 1.31965 * 121.75341 * 0.02562 * 20 19 17 22 22 F 1.35104 * 119.66884 * 179.97438 * 21 20 19 23 23 C 1.47022 * 125.64831 * 180.02562 * 9 7 2 24 24 H 0.96999 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.09003 * 110.37331 * 37.06992 * 10 9 7 26 26 H 1.09005 * 110.45945 * 274.80250 * 10 9 7 27 27 H 1.09003 * 111.00139 * 278.93622 * 11 10 9 28 28 H 1.08994 * 111.00628 * 155.08126 * 11 10 9 29 29 H 1.08000 * 120.80427 * 0.02562 * 16 15 14 30 30 H 1.08002 * 119.55472 * 179.70122 * 19 17 16 31 31 H 1.08993 * 109.88502 * 61.59781 * 23 9 7 32 32 H 1.09006 * 109.88080 * 300.42737 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4021 -3.9324 -0.6110 12 6 0.7785 -4.7525 -0.0268 13 1 0.5466 -5.0980 0.9807 14 8 1.0970 -5.8560 -0.8768 15 6 1.7286 -6.9147 -0.3034 16 6 1.9613 -6.9389 1.0663 17 6 2.6053 -8.0428 1.6067 18 17 2.9165 -8.1297 3.3124 19 6 3.0014 -9.0702 0.7706 20 7 2.7700 -9.0148 -0.5271 21 6 2.1563 -7.9856 -1.0798 22 9 1.9415 -7.9725 -2.4136 23 6 1.9318 -3.7275 -0.0005 24 1 -0.4850 0.8400 0.0004 25 1 -0.5998 -1.7589 -0.6147 26 1 -0.5283 -2.4861 1.0186 27 1 -0.3533 -3.8983 -1.6994 28 1 -1.3592 -4.3327 -0.2767 29 1 1.6451 -6.1202 1.6956 30 1 3.5074 -9.9295 1.1853 31 1 2.5288 -3.8642 0.9010 32 1 2.5576 -3.8511 -0.8844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228573742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:50 Heat of formation + Delta-G solvation = -12.915144 kcal Electronic energy + Delta-G solvation = -20058.088761 eV Core-core repulsion = 16574.988128 eV Total energy + Delta-G solvation = -3483.100633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.02757 -40.83665 -38.90908 -36.97491 -36.46395 -32.57049 -32.25909 -30.44361 -29.32003 -27.63542 -25.01837 -23.95445 -23.55767 -20.51957 -20.43320 -18.79665 -18.02518 -17.69564 -16.97702 -16.48655 -15.88071 -15.24635 -14.83490 -14.73268 -14.23556 -14.00530 -13.68945 -13.45702 -13.18854 -12.89029 -12.63824 -12.08135 -11.94582 -11.67509 -11.46481 -11.11102 -10.85701 -10.77404 -10.61260 -10.21903 -10.17604 -9.97343 -9.73367 -9.71352 -8.77036 -8.52498 -7.00074 -5.77479 -3.20519 0.44473 0.72845 1.62539 2.78178 3.14201 3.35356 3.39531 3.40625 3.44332 4.07397 4.33378 4.38189 4.47660 4.90535 5.02187 5.09560 5.35400 5.38231 5.40440 5.48155 5.60155 5.86579 6.12244 6.25633 6.32281 6.38494 6.45893 7.10883 7.25698 7.30840 7.48874 7.69844 8.20842 9.08434 9.68546 10.30235 11.26930 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.004202 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.230575 B = 6661.232342 C = 7330.217927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.152 3.848 11 C -0.135 4.135 12 C 0.061 3.939 13 H 0.082 0.918 14 O -0.282 6.282 15 C 0.092 3.908 16 C -0.138 4.138 17 C -0.057 4.057 18 Cl -0.042 7.042 19 C 0.100 3.900 20 N -0.462 5.462 21 C 0.280 3.720 22 F -0.098 7.098 23 C 0.119 3.881 24 H 0.255 0.745 25 H 0.116 0.884 26 H 0.019 0.981 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.165 0.835 30 H 0.177 0.823 31 H 0.028 0.972 32 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 -16.526 3.725 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.748 3.252 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.326 5.326 10 C 0.027 3.973 11 C -0.173 4.173 12 C 0.005 3.995 13 H 0.099 0.901 14 O -0.193 6.193 15 C 0.041 3.959 16 C -0.165 4.165 17 C -0.086 4.086 18 Cl -0.013 7.013 19 C -0.058 4.058 20 N -0.176 5.176 21 C 0.125 3.875 22 F -0.077 7.077 23 C -0.007 4.007 24 H 0.066 0.934 25 H 0.134 0.866 26 H 0.037 0.963 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.183 0.817 30 H 0.194 0.806 31 H 0.046 0.954 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.503 -16.907 3.079 17.366 hybrid contribution 0.254 1.483 0.723 1.670 sum 2.757 -15.423 3.802 16.122 Atomic orbital electron populations 1.69725 1.04957 1.25234 1.57153 1.24795 0.95763 0.97823 1.01900 0.86102 0.78425 0.82669 0.78002 1.21005 1.21425 1.21096 1.19031 0.90572 0.82103 1.43879 0.90342 1.44335 1.01816 0.99279 1.87208 1.22027 0.84849 0.91693 0.98687 1.23252 0.94535 0.97596 1.01948 1.23961 0.98415 0.83731 0.93362 0.90051 1.86332 1.70424 1.24386 1.38169 1.19751 0.95275 0.89667 0.91236 1.21691 1.01045 0.99976 0.93766 1.21850 1.02395 0.96907 0.87464 1.98403 1.94163 1.98139 1.10585 1.22320 0.99183 0.98181 0.86097 1.67204 1.13305 1.23485 1.13631 1.17483 0.99680 0.90863 0.79482 1.91663 1.92070 1.95990 1.28023 1.21664 0.93508 0.86493 0.99064 0.93428 0.86635 0.96349 0.90430 0.91189 0.81731 0.80578 0.95431 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.95 10.09 55.49 0.56 -25.39 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.19 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.60 -14.85 3.39 -170.07 -0.58 -15.43 16 10 C 0.15 3.50 5.89 -2.53 -0.01 3.48 16 11 C -0.13 -2.44 6.81 -24.58 -0.17 -2.61 16 12 C 0.06 1.03 2.90 -24.89 -0.07 0.96 16 13 H 0.08 1.20 5.86 -51.93 -0.30 0.90 16 14 O -0.28 -4.63 9.75 -19.61 -0.19 -4.82 16 15 C 0.09 1.32 6.70 -39.03 -0.26 1.06 16 16 C -0.14 -1.71 8.96 -39.12 -0.35 -2.06 16 17 C -0.06 -0.61 6.34 -39.38 -0.25 -0.86 16 18 Cl -0.04 -0.40 28.99 -51.86 -1.50 -1.90 16 19 C 0.10 1.04 10.98 -17.50 -0.19 0.85 16 20 N -0.46 -6.04 10.37 -13.45 -0.14 -6.18 16 21 C 0.28 4.04 8.43 -17.21 -0.14 3.90 16 22 F -0.10 -1.51 17.14 2.25 0.04 -1.47 16 23 C 0.12 2.42 7.01 -3.06 -0.02 2.40 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.12 3.00 5.87 -51.93 -0.31 2.69 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.17 1.95 5.93 -52.49 -0.31 1.63 16 30 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -28.87 292.86 -7.15 -36.01 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.00 Total: -2.21 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.73 Total: 0.48 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.16 Total: -46.99 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.19 Total: -4.82 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.87 -7.15 -36.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228573742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.100 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds