Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99921 * 2 1 4 4 H 1.48501 * 109.47137 * 95.67235 * 3 2 1 5 5 H 1.48503 * 109.46976 * 215.67275 * 3 2 1 6 6 H 1.48502 * 109.47074 * 335.67213 * 3 2 1 7 7 C 1.38812 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99859 * 21.19830 * 7 2 1 9 9 N 1.36936 * 119.99954 * 201.20132 * 7 2 1 10 10 C 1.47419 * 125.64864 * 16.01500 * 9 7 2 11 11 C 1.55130 * 104.71998 * 155.81983 * 10 9 7 12 12 C 1.55151 * 101.48948 * 37.29604 * 11 10 9 13 13 H 1.08994 * 110.72322 * 82.69182 * 12 11 10 14 14 O 1.42905 * 110.72153 * 205.97085 * 12 11 10 15 15 C 1.35792 * 116.99621 * 204.97440 * 14 12 11 16 16 C 1.39135 * 120.84989 * 359.97438 * 15 14 12 17 17 C 1.38166 * 119.11411 * 179.97438 * 16 15 14 18 18 Cl 1.73593 * 119.58825 * 180.02562 * 17 16 15 19 19 N 1.32036 * 120.82809 * 359.97218 * 17 16 15 20 20 C 1.31994 * 121.86146 * 0.03127 * 19 17 16 21 21 C 1.38137 * 120.80024 * 359.73202 * 20 19 17 22 22 F 1.35102 * 120.45452 * 180.28657 * 21 20 19 23 23 C 1.47022 * 125.64704 * 196.32282 * 9 7 2 24 24 H 0.97005 * 120.00439 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.36879 * 274.74687 * 10 9 7 26 26 H 1.09002 * 110.36747 * 37.07222 * 10 9 7 27 27 H 1.09005 * 111.19082 * 279.18688 * 11 10 9 28 28 H 1.08999 * 110.93897 * 155.29200 * 11 10 9 29 29 H 1.08001 * 120.44288 * 0.02562 * 16 15 14 30 30 H 1.07998 * 119.60124 * 180.02562 * 20 19 17 31 31 H 1.09000 * 109.88542 * 300.44680 * 23 9 7 32 32 H 1.09005 * 109.88329 * 61.44771 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6175 1.9772 1.3932 5 1 3.4826 1.4777 -0.8165 6 1 1.3928 2.6843 -0.5768 7 6 2.0103 -1.2021 -0.0005 8 1 1.5251 -2.1057 -0.3392 9 7 3.3101 -1.2424 0.4283 10 6 3.9884 -0.1957 1.2142 11 6 5.1369 -0.9361 1.9485 12 6 5.5881 -1.9547 0.8686 13 1 6.2733 -1.4883 0.1609 14 8 6.1879 -3.1016 1.4745 15 6 7.0706 -3.8062 0.7206 16 6 7.3669 -3.4166 -0.5818 17 6 8.2709 -4.1596 -1.3165 18 17 8.6500 -3.6843 -2.9425 19 7 8.8508 -5.2260 -0.7971 20 6 8.5961 -5.6274 0.4342 21 6 7.7078 -4.9353 1.2343 22 9 7.4565 -5.3491 2.4956 23 6 4.2623 -2.3338 0.1758 24 1 -0.4851 0.8401 -0.0004 25 1 4.3903 0.5733 0.5547 26 1 3.2991 0.2440 1.9351 27 1 4.7704 -1.4472 2.8388 28 1 5.9452 -0.2493 2.1997 29 1 6.8971 -2.5447 -1.0124 30 1 9.0917 -6.5049 0.8226 31 1 3.8786 -3.2646 0.5935 32 1 4.4208 -2.4468 -0.8967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233911441.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = -34.724870 kcal Electronic energy + Delta-G solvation = -20125.852732 eV Core-core repulsion = 16641.806358 eV Total energy + Delta-G solvation = -3484.046374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.03490 -41.92818 -40.26342 -38.40479 -37.73942 -34.54538 -32.82335 -32.06533 -31.39015 -29.84058 -26.61248 -25.05061 -24.57854 -22.86094 -22.02087 -20.02614 -19.25662 -18.77356 -18.37333 -17.55968 -17.29929 -17.09164 -16.34594 -15.86619 -15.65311 -15.39881 -15.33202 -15.06196 -14.91948 -14.43353 -14.13191 -13.93228 -13.33059 -13.22471 -13.01651 -12.70521 -12.50748 -12.30871 -12.20934 -12.05655 -11.67334 -11.47510 -11.06947 -10.89434 -10.40404 -9.88271 -9.16500 -8.20183 -5.50302 -0.50766 -0.19526 0.56968 1.30224 1.39711 1.47637 1.58405 2.21265 2.39345 2.76836 2.98251 3.10335 3.26199 3.36505 3.41514 3.59209 3.77034 3.86984 4.01566 4.12854 4.25958 4.36195 4.48642 4.69152 4.75145 4.80689 4.82534 5.06826 5.14506 5.57795 5.88259 6.05647 6.36268 6.67210 7.46557 7.98184 8.99314 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.004611 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.785263 B = 6070.861361 C = 6824.688142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.037 4.037 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.309 1.309 7 C -0.243 4.243 8 H 0.056 0.944 9 N -0.624 5.624 10 C 0.096 3.904 11 C -0.110 4.110 12 C 0.075 3.925 13 H 0.118 0.882 14 O -0.289 6.289 15 C 0.147 3.853 16 C -0.221 4.221 17 C 0.197 3.803 18 Cl -0.011 7.011 19 N -0.490 5.490 20 C 0.142 3.858 21 C 0.010 3.990 22 F -0.123 7.123 23 C 0.115 3.885 24 H 0.264 0.736 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.170 0.830 30 H 0.220 0.780 31 H 0.031 0.969 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.080 -6.786 0.903 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.232 4.232 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.238 1.238 7 C -0.371 4.371 8 H 0.074 0.926 9 N -0.352 5.352 10 C -0.028 4.028 11 C -0.148 4.148 12 C 0.019 3.981 13 H 0.135 0.865 14 O -0.199 6.199 15 C 0.092 3.908 16 C -0.243 4.243 17 C 0.034 3.966 18 Cl 0.018 6.982 19 N -0.204 5.204 20 C -0.016 4.016 21 C -0.012 4.012 22 F -0.102 7.102 23 C -0.011 4.011 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.187 0.813 30 H 0.236 0.764 31 H 0.049 0.951 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.382 -7.152 0.485 23.502 hybrid contribution -1.188 1.227 0.144 1.713 sum 21.195 -5.925 0.629 22.016 Atomic orbital electron populations 1.69967 1.07422 1.27530 1.55502 1.25654 0.95854 1.01133 1.00509 0.85945 0.77920 0.79370 0.78962 1.18793 1.18392 1.23799 1.18539 0.85414 0.94493 1.38668 0.92597 1.44669 1.08658 1.19933 1.61936 1.22285 0.94060 0.92468 0.93988 1.22882 0.98224 0.96489 0.97191 1.23715 0.93345 0.84049 0.97008 0.86461 1.86247 1.53327 1.40349 1.40007 1.19541 0.89444 0.91244 0.90561 1.21970 1.03590 1.05205 0.93497 1.21493 0.93593 0.92251 0.89313 1.98432 1.93443 1.89666 1.16682 1.67238 1.25686 1.14333 1.13139 1.23193 0.92668 0.98983 0.86712 1.18386 1.03458 0.96323 0.83070 1.91541 1.93235 1.89350 1.36056 1.21847 0.89159 0.91856 0.98220 0.92698 0.93853 0.92827 0.89793 0.86281 0.81272 0.76388 0.95082 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.01 13.97 21.65 0.30 -59.70 16 2 C -0.04 -2.14 5.45 84.86 0.46 -1.68 16 3 Si 0.95 44.60 24.23 68.60 1.66 46.26 16 4 H -0.26 -11.32 6.39 99.48 0.64 -10.69 16 5 H -0.26 -11.33 6.45 99.48 0.64 -10.69 16 6 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 7 C -0.24 -13.84 10.60 84.03 0.89 -12.95 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 9 N -0.62 -28.83 3.24 -691.56 -2.24 -31.07 16 10 C 0.10 3.69 4.68 86.93 0.41 4.10 16 11 C -0.11 -3.10 6.82 32.06 0.22 -2.88 16 12 C 0.07 2.08 2.84 31.78 0.09 2.17 16 13 H 0.12 2.62 5.98 -2.39 -0.01 2.61 16 14 O -0.29 -7.94 9.79 -91.21 -0.89 -8.84 16 15 C 0.15 3.53 6.74 22.78 0.15 3.68 16 16 C -0.22 -4.79 8.85 22.47 0.20 -4.59 16 17 C 0.20 4.22 7.27 84.64 0.62 4.83 16 18 Cl -0.01 -0.22 29.10 -2.72 -0.08 -0.30 16 19 N -0.49 -10.16 10.34 -186.77 -1.93 -12.09 16 20 C 0.14 2.43 11.16 84.64 0.94 3.37 16 21 C 0.01 0.22 7.35 22.54 0.17 0.39 16 22 F -0.12 -2.86 17.18 44.97 0.77 -2.09 16 23 C 0.11 4.25 7.01 86.73 0.61 4.86 16 24 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 25 H 0.04 1.62 5.55 -2.39 -0.01 1.60 16 26 H 0.05 2.24 6.24 -2.39 -0.01 2.22 16 27 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.12 2.43 8.14 -2.39 -0.02 2.42 16 29 H 0.17 3.36 6.01 -2.91 -0.02 3.35 16 30 H 0.22 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.03 1.24 8.06 -2.39 -0.02 1.22 16 32 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -67.68 287.27 3.38 -64.31 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.03 Total: 2.22 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 4.76 Total: 1.29 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -3.87 Total: -102.86 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.89 Total: -8.84 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.77 Total: -2.09 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.66 Total: 46.26 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -67.68 3.38 -64.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233911441.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.581 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds