Wall clock time and date at job start Tue Mar 31 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99570 * 2 1 4 4 H 1.48501 * 109.47167 * 269.99859 * 3 2 1 5 5 H 1.48497 * 109.47299 * 30.00197 * 3 2 1 6 6 H 1.48504 * 109.46974 * 150.00048 * 3 2 1 7 7 C 1.37874 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.47956 * 111.00298 * 170.00121 * 10 9 7 12 12 C 1.53926 * 86.18141 * 222.41402 * 11 10 9 13 13 O 1.42909 * 113.73459 * 138.07634 * 12 11 10 14 14 C 1.35793 * 117.00101 * 159.05278 * 13 12 11 15 15 C 1.39142 * 120.84169 * 5.64140 * 14 13 12 16 16 C 1.38170 * 119.10632 * 179.72279 * 15 14 13 17 17 Cl 1.73600 * 119.58422 * 180.25341 * 16 15 14 18 18 N 1.32034 * 120.83237 * 0.28152 * 16 15 14 19 19 C 1.31994 * 121.86027 * 359.97438 * 18 16 15 20 20 C 1.38136 * 120.80329 * 0.02562 * 19 18 16 21 21 F 1.35099 * 120.45853 * 179.97438 * 20 19 18 22 22 C 1.48186 * 111.07099 * 70.56449 * 10 9 7 23 23 H 0.96995 * 120.00345 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47560 * 59.99892 * 9 7 2 25 25 H 1.09004 * 109.47536 * 299.99490 * 9 7 2 26 26 H 1.08998 * 113.76366 * 108.09431 * 11 10 9 27 27 H 1.09004 * 113.76034 * 336.73258 * 11 10 9 28 28 H 1.09001 * 113.73580 * 269.25304 * 12 11 10 29 29 H 1.07999 * 120.44768 * 0.02562 * 15 14 13 30 30 H 1.07999 * 119.60078 * 179.97438 * 19 18 16 31 31 H 1.08996 * 113.76057 * 23.24212 * 22 10 9 32 32 H 1.08998 * 113.82324 * 251.80685 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2058 -3.6157 -0.0015 11 6 1.5163 -4.9028 0.2373 12 6 2.6921 -5.2417 1.1710 13 8 2.2954 -5.8756 2.3888 14 6 3.2436 -6.5876 3.0505 15 6 4.5655 -6.5911 2.6164 16 6 5.5022 -7.3235 3.3202 17 17 7.1563 -7.3313 2.7933 18 7 5.1549 -8.0181 4.3880 19 6 3.9107 -8.0441 4.8280 20 6 2.9162 -7.3381 4.1794 21 9 1.6449 -7.3700 4.6355 22 6 2.9007 -3.7222 1.3030 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 1.4583 -5.5402 -0.6450 27 1 0.5614 -4.8005 0.7529 28 1 3.5141 -5.7557 0.6727 29 1 4.8566 -6.0249 1.7439 30 1 3.6671 -8.6250 5.7052 31 1 2.3517 -3.2738 2.1310 32 1 3.9469 -3.4182 1.2706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233915021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:35 Heat of formation + Delta-G solvation = -11.079929 kcal Electronic energy + Delta-G solvation = -19646.330476 eV Core-core repulsion = 16163.309424 eV Total energy + Delta-G solvation = -3483.021052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.09815 -40.98378 -39.60146 -37.55540 -36.87588 -32.99216 -31.79077 -31.04990 -29.33138 -26.06448 -25.55578 -24.12008 -23.63466 -21.70983 -19.72665 -19.05604 -17.94748 -17.51347 -16.64541 -16.36182 -16.14898 -15.49822 -14.91740 -14.78797 -14.55402 -14.36195 -14.24300 -13.96458 -13.22989 -13.10865 -12.31199 -12.24509 -12.02068 -11.83547 -11.70551 -11.45862 -11.03127 -10.78514 -10.59484 -10.43277 -10.20002 -9.87520 -9.46600 -9.29759 -8.91738 -8.59949 -8.05337 -6.14211 -4.17244 0.36195 0.71948 1.42184 2.67468 3.08445 3.25941 3.32167 3.35299 3.68917 3.96874 4.23168 4.32544 4.43559 4.56220 4.71045 4.85693 4.88494 5.00920 5.22200 5.36809 5.51094 5.82701 5.87757 5.98319 6.13501 6.17731 6.41008 6.97100 7.05237 7.21775 7.47842 7.71022 7.94293 8.25839 8.89312 9.47977 10.96947 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.020316 B = 0.003779 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.896854 B = 7407.007631 C = 8140.068119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.163 3.837 10 N -0.471 5.471 11 C 0.011 3.989 12 C 0.034 3.966 13 O -0.283 6.283 14 C 0.164 3.836 15 C -0.221 4.221 16 C 0.201 3.799 17 Cl -0.018 7.018 18 N -0.481 5.481 19 C 0.126 3.874 20 C 0.016 3.984 21 F -0.117 7.117 22 C 0.008 3.992 23 H 0.263 0.737 24 H 0.037 0.963 25 H 0.003 0.997 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.163 0.837 30 H 0.183 0.817 31 H 0.081 0.919 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.613 -16.413 7.196 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.037 3.963 10 N -0.196 5.196 11 C -0.118 4.118 12 C -0.022 4.022 13 O -0.192 6.192 14 C 0.108 3.892 15 C -0.243 4.243 16 C 0.038 3.962 17 Cl 0.011 6.989 18 N -0.195 5.195 19 C -0.032 4.032 20 C -0.007 4.007 21 F -0.096 7.096 22 C -0.121 4.121 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.021 0.979 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.181 0.819 30 H 0.200 0.800 31 H 0.099 0.901 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.307 -16.567 7.007 20.253 hybrid contribution -0.740 1.493 0.151 1.673 sum 8.567 -15.074 7.159 18.758 Atomic orbital electron populations 1.69947 1.06109 1.27059 1.50356 1.24988 0.94887 0.99459 0.95063 0.86465 0.79692 0.82845 0.78248 1.20478 1.21177 1.19800 1.21047 0.93447 0.89813 1.51084 0.91900 1.20245 0.90775 0.88270 0.97018 1.68686 1.21551 1.02050 1.27279 1.24184 0.95901 0.94899 0.96823 1.25327 1.00608 0.93866 0.82416 1.86347 1.34774 1.61141 1.36931 1.19358 0.88743 0.89950 0.91129 1.21932 0.91128 1.06098 1.05155 1.21374 0.88027 0.94585 0.92249 1.98427 1.15381 1.97114 1.88022 1.67137 1.18794 1.20407 1.13193 1.22640 0.85492 0.96139 0.98902 1.18228 0.81972 1.03888 0.96609 1.91556 1.35038 1.95125 1.87877 1.24312 1.01984 0.91102 0.94675 0.92715 0.94508 0.97949 0.88916 0.90398 0.87426 0.81930 0.80008 0.90057 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.13 8.84 -34.44 -0.30 -14.43 16 8 H 0.06 1.70 7.80 -52.48 -0.41 1.29 16 9 C 0.16 4.09 4.58 -4.98 -0.02 4.07 16 10 N -0.47 -9.55 6.25 -239.79 -1.50 -11.05 16 11 C 0.01 0.18 7.81 -2.77 -0.02 0.16 16 12 C 0.03 0.48 3.83 -25.80 -0.10 0.39 16 13 O -0.28 -4.16 10.08 -19.09 -0.19 -4.36 16 14 C 0.16 2.10 6.73 -38.79 -0.26 1.84 16 15 C -0.22 -2.52 8.84 -39.27 -0.35 -2.86 16 16 C 0.20 2.29 7.27 -17.49 -0.13 2.16 16 17 Cl -0.02 -0.18 29.10 -51.86 -1.51 -1.69 16 18 N -0.48 -5.49 10.34 -10.38 -0.11 -5.60 16 19 C 0.13 1.25 11.16 -17.52 -0.20 1.05 16 20 C 0.02 0.19 7.35 -39.17 -0.29 -0.10 16 21 F -0.12 -1.50 17.18 2.25 0.04 -1.46 16 22 C 0.01 0.15 7.32 -2.63 -0.02 0.13 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.00 0.07 7.70 -51.93 -0.40 -0.33 16 26 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.08 1.34 7.79 -51.93 -0.40 0.94 16 28 H 0.11 1.30 6.14 -51.93 -0.32 0.98 16 29 H 0.16 1.65 6.10 -52.49 -0.32 1.33 16 30 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.08 1.58 7.79 -51.93 -0.40 1.17 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 300.40 15.07 4.53 4.53 Total: -1.00 -29.77 300.40 -7.89 -37.66 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -3.08 Total: -2.76 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.78 Total: -6.09 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.87 Total: -42.04 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.19 Total: -4.36 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.51 Total: -1.69 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.77 -7.89 -37.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233915021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.580 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds