Wall clock time and date at job start Tue Mar 31 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99570 * 2 1 4 4 H 1.48501 * 109.47167 * 269.99859 * 3 2 1 5 5 H 1.48497 * 109.47299 * 30.00197 * 3 2 1 6 6 H 1.48504 * 109.46974 * 150.00048 * 3 2 1 7 7 C 1.37874 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.47956 * 111.00298 * 170.00121 * 10 9 7 12 12 C 1.53926 * 86.18141 * 222.41402 * 11 10 9 13 13 O 1.42909 * 113.73459 * 138.07634 * 12 11 10 14 14 C 1.35793 * 117.00101 * 159.05278 * 13 12 11 15 15 C 1.39142 * 120.84169 * 5.64140 * 14 13 12 16 16 C 1.38170 * 119.10632 * 179.72279 * 15 14 13 17 17 Cl 1.73600 * 119.58422 * 180.25341 * 16 15 14 18 18 N 1.32034 * 120.83237 * 0.28152 * 16 15 14 19 19 C 1.31994 * 121.86027 * 359.97438 * 18 16 15 20 20 C 1.38136 * 120.80329 * 0.02562 * 19 18 16 21 21 F 1.35099 * 120.45853 * 179.97438 * 20 19 18 22 22 C 1.48186 * 111.07099 * 70.56449 * 10 9 7 23 23 H 0.96995 * 120.00345 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47560 * 59.99892 * 9 7 2 25 25 H 1.09004 * 109.47536 * 299.99490 * 9 7 2 26 26 H 1.08998 * 113.76366 * 108.09431 * 11 10 9 27 27 H 1.09004 * 113.76034 * 336.73258 * 11 10 9 28 28 H 1.09001 * 113.73580 * 269.25304 * 12 11 10 29 29 H 1.07999 * 120.44768 * 0.02562 * 15 14 13 30 30 H 1.07999 * 119.60078 * 179.97438 * 19 18 16 31 31 H 1.08996 * 113.76057 * 23.24212 * 22 10 9 32 32 H 1.08998 * 113.82324 * 251.80685 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2058 -3.6157 -0.0015 11 6 1.5163 -4.9028 0.2373 12 6 2.6921 -5.2417 1.1710 13 8 2.2954 -5.8756 2.3888 14 6 3.2436 -6.5876 3.0505 15 6 4.5655 -6.5911 2.6164 16 6 5.5022 -7.3235 3.3202 17 17 7.1563 -7.3313 2.7933 18 7 5.1549 -8.0181 4.3880 19 6 3.9107 -8.0441 4.8280 20 6 2.9162 -7.3381 4.1794 21 9 1.6449 -7.3700 4.6355 22 6 2.9007 -3.7222 1.3030 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 1.4583 -5.5402 -0.6450 27 1 0.5614 -4.8005 0.7529 28 1 3.5141 -5.7557 0.6727 29 1 4.8566 -6.0249 1.7439 30 1 3.6671 -8.6250 5.7052 31 1 2.3517 -3.2738 2.1310 32 1 3.9469 -3.4182 1.2706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233915021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:34 Heat of formation + Delta-G solvation = -32.009849 kcal Electronic energy + Delta-G solvation = -19647.238066 eV Core-core repulsion = 16163.309424 eV Total energy + Delta-G solvation = -3483.928642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.04591 -42.02979 -40.78074 -38.77500 -37.73019 -35.04968 -32.76289 -31.99560 -31.03663 -27.63233 -27.02794 -25.36221 -24.57536 -23.33028 -21.10591 -20.08584 -18.91715 -18.65188 -18.41096 -17.42502 -17.30651 -16.85937 -16.37631 -16.09490 -15.66630 -15.55493 -15.23629 -15.00420 -14.74387 -14.41324 -13.97151 -13.79612 -13.53816 -13.01577 -12.84961 -12.67947 -12.59236 -12.40246 -12.21496 -11.87132 -11.64182 -11.25462 -11.07227 -10.68352 -10.38814 -9.88940 -9.75855 -8.26938 -6.38020 -0.50078 -0.19308 0.57843 1.39703 1.40843 1.51658 1.61899 2.21614 2.36902 2.78382 3.00715 3.07706 3.17056 3.24507 3.35628 3.70285 3.87408 3.90055 4.13123 4.27210 4.43311 4.46439 4.58747 4.65050 4.77374 4.85179 5.01931 5.13421 5.44978 5.69687 5.90756 6.00104 6.26344 6.36699 6.76445 7.32362 8.84911 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.020316 B = 0.003779 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.896854 B = 7407.007631 C = 8140.068119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.177 3.823 10 N -0.481 5.481 11 C 0.007 3.993 12 C 0.062 3.938 13 O -0.299 6.299 14 C 0.146 3.854 15 C -0.216 4.216 16 C 0.196 3.804 17 Cl -0.008 7.008 18 N -0.490 5.490 19 C 0.141 3.859 20 C 0.006 3.994 21 F -0.126 7.126 22 C 0.001 3.999 23 H 0.266 0.734 24 H 0.009 0.991 25 H -0.025 1.025 26 H 0.120 0.880 27 H 0.064 0.936 28 H 0.142 0.858 29 H 0.175 0.825 30 H 0.218 0.782 31 H 0.056 0.944 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.548 -17.246 7.618 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.082 0.918 9 C 0.050 3.950 10 N -0.206 5.206 11 C -0.122 4.122 12 C 0.006 3.994 13 O -0.209 6.209 14 C 0.091 3.909 15 C -0.238 4.238 16 C 0.033 3.967 17 Cl 0.020 6.980 18 N -0.204 5.204 19 C -0.016 4.016 20 C -0.017 4.017 21 F -0.105 7.105 22 C -0.127 4.127 23 H 0.075 0.925 24 H 0.027 0.973 25 H -0.008 1.008 26 H 0.138 0.862 27 H 0.082 0.918 28 H 0.159 0.841 29 H 0.193 0.807 30 H 0.234 0.766 31 H 0.075 0.925 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.265 -17.425 7.432 22.040 hybrid contribution -1.314 1.641 0.084 2.104 sum 9.951 -15.784 7.516 20.116 Atomic orbital electron populations 1.70074 1.07794 1.28113 1.51316 1.25922 0.95736 1.03325 0.94498 0.85371 0.78559 0.78089 0.78567 1.19688 1.20784 1.18723 1.21399 0.93678 0.91017 1.50820 0.91753 1.19880 0.90903 0.89886 0.94299 1.68550 1.20966 1.01970 1.29081 1.24259 0.95989 0.93360 0.98600 1.24979 1.00081 0.92029 0.82293 1.86307 1.35738 1.61755 1.37127 1.19567 0.89047 0.90573 0.91718 1.21986 0.90434 1.05956 1.05419 1.21523 0.88517 0.94409 0.92239 1.98432 1.14581 1.97045 1.87915 1.67237 1.19352 1.20537 1.13300 1.23160 0.84372 0.95017 0.99049 1.18475 0.82090 1.04395 0.96722 1.91535 1.35705 1.95240 1.87979 1.24329 1.01927 0.93961 0.92532 0.92533 0.97292 1.00761 0.86223 0.91794 0.84111 0.80732 0.76550 0.92516 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.53 -29.60 8.84 25.60 0.23 -29.37 16 8 H 0.06 3.49 7.80 -2.91 -0.02 3.46 16 9 C 0.18 9.26 4.58 85.55 0.39 9.65 16 10 N -0.48 -19.64 6.25 -915.79 -5.72 -25.37 16 11 C 0.01 0.21 7.81 86.41 0.67 0.89 16 12 C 0.06 1.70 3.83 31.24 0.12 1.82 16 13 O -0.30 -8.54 10.08 -91.23 -0.92 -9.46 16 14 C 0.15 3.52 6.73 22.78 0.15 3.67 16 15 C -0.22 -4.44 8.84 22.47 0.20 -4.24 16 16 C 0.20 4.01 7.27 84.65 0.62 4.62 16 17 Cl -0.01 -0.15 29.10 -2.72 -0.08 -0.23 16 18 N -0.49 -9.96 10.34 -186.76 -1.93 -11.89 16 19 C 0.14 2.44 11.16 84.64 0.94 3.39 16 20 C 0.01 0.13 7.35 22.54 0.17 0.29 16 21 F -0.13 -3.09 17.18 44.97 0.77 -2.32 16 22 C 0.00 0.05 7.32 86.37 0.63 0.68 16 23 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 25 H -0.03 -1.43 7.70 -2.39 -0.02 -1.45 16 26 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 27 H 0.06 2.27 7.79 -2.39 -0.02 2.25 16 28 H 0.14 2.97 6.14 -2.39 -0.01 2.95 16 29 H 0.18 3.06 6.10 -2.91 -0.02 3.04 16 30 H 0.22 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.06 2.27 7.79 -2.39 -0.02 2.26 16 32 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -64.98 300.40 0.17 -64.81 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.16 Total: 2.18 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 4.58 Total: -7.92 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -7.37 Total: -92.65 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.92 Total: -9.46 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.77 Total: -2.32 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -64.98 0.17 -64.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233915021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.799 kcal (2) G-P(sol) polarization free energy of solvation -64.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds