Wall clock time and date at job start Tue Mar 31 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 N 1.32992 * 119.60499 * 343.51553 * 3 2 1 5 5 C 1.31268 * 121.79793 * 179.97438 * 4 3 2 6 6 C 1.40005 * 120.77049 * 0.02627 * 5 4 3 7 7 C 1.47804 * 120.43168 * 179.97438 * 6 5 4 8 8 C 1.40015 * 119.90245 * 129.72885 * 7 6 5 9 9 C 1.36192 * 120.14015 * 179.75981 * 8 7 6 10 10 C 1.41007 * 119.93029 * 0.50966 * 9 8 7 11 11 C 1.40977 * 120.09402 * 179.72284 * 10 9 8 12 12 H 1.07994 * 120.00154 * 24.72853 * 11 10 9 13 13 C 1.40066 * 119.99726 * 204.72559 * 11 10 9 14 14 N 1.30767 * 119.99583 * 17.95898 * 13 11 10 15 15 Si 1.86798 * 120.00142 * 197.95542 * 13 11 10 16 16 H 1.48501 * 109.46868 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46920 * 120.00093 * 15 13 11 18 18 H 1.48495 * 109.46987 * 240.00493 * 15 13 11 19 19 C 1.40884 * 119.80557 * 359.74072 * 10 9 8 20 20 C 1.36464 * 119.86361 * 0.02562 * 19 10 9 21 21 F 1.35100 * 119.96835 * 179.97438 * 20 19 10 22 22 C 1.39994 * 119.13203 * 359.97438 * 6 5 4 23 23 C 1.38428 * 118.36180 * 359.72763 * 22 6 5 24 24 F 1.35096 * 120.42613 * 180.28162 * 23 22 6 25 25 H 1.07998 * 119.61693 * 180.02562 * 5 4 3 26 26 H 1.08003 * 119.93224 * 0.02562 * 8 7 6 27 27 H 1.07993 * 120.03629 * 180.23188 * 9 8 7 28 28 H 0.97004 * 119.99131 * 180.02562 * 14 13 11 29 29 H 1.08003 * 120.06818 * 180.02562 * 19 10 9 30 30 H 1.08001 * 120.81772 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2255 -1.1078 0.3281 5 6 4.5372 -1.1556 0.3419 6 6 5.2985 -0.0288 0.0086 7 6 6.7751 -0.0908 0.0271 8 6 7.5065 0.3583 -1.0792 9 6 8.8674 0.3080 -1.0653 10 6 9.5410 -0.2074 0.0612 11 6 10.9494 -0.2665 0.0768 12 1 11.5251 0.4076 -0.5401 13 6 11.6021 -1.1995 0.8925 14 7 10.9469 -2.2296 1.3612 15 14 13.4085 -0.9723 1.3107 16 1 13.9152 0.2634 0.6616 17 1 13.5650 -0.8574 2.7830 18 1 14.1809 -2.1420 0.8206 19 6 8.8023 -0.6634 1.1708 20 6 7.4391 -0.6048 1.1501 21 9 6.7286 -1.0419 2.2128 22 6 4.6428 1.1572 -0.3425 23 6 3.2585 1.1655 -0.3512 24 9 2.5832 2.2858 -0.6890 25 1 5.0350 -2.0747 0.6135 26 1 6.9905 0.7494 -1.9436 27 1 9.4300 0.6582 -1.9180 28 1 11.3990 -2.8755 1.9264 29 1 9.3139 -1.0586 2.0360 30 1 5.2031 2.0424 -0.6048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238991353.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:15 Heat of formation + Delta-G solvation = -13.745821 kcal Electronic energy + Delta-G solvation = -20463.586765 eV Core-core repulsion = 16859.422655 eV Total energy + Delta-G solvation = -3604.164110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.061 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.10558 -47.97156 -40.03658 -37.74860 -36.48285 -34.45159 -32.73291 -31.41384 -29.53507 -29.43721 -26.40249 -24.12587 -23.37317 -21.49067 -20.82509 -19.50726 -18.01611 -17.47954 -17.15150 -16.15827 -16.00520 -15.36019 -15.12165 -14.91548 -14.68203 -14.45878 -14.05662 -13.59105 -13.41138 -13.22424 -12.94079 -12.73746 -12.71573 -12.46550 -12.39186 -11.97947 -11.51694 -11.38395 -11.11451 -10.68244 -10.37504 -10.15315 -9.85682 -9.68213 -9.50655 -8.90142 -7.86393 -7.66149 -7.25897 -4.85467 0.44088 1.10454 2.18608 2.51536 2.61034 2.76792 2.83806 2.88790 2.97202 3.45460 3.57701 3.82540 3.98717 4.16489 4.66039 4.74168 4.97015 5.12870 5.29903 5.44469 5.56907 5.83658 5.89568 6.14958 6.39362 6.51059 6.57496 6.63380 6.78899 7.17493 7.26357 7.34227 7.41261 7.53219 7.74469 7.78810 8.10880 8.33713 8.40533 9.63677 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.040433 B = 0.003638 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.336315 B = 7694.368558 C = 8145.756809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.278 3.722 3 C 0.112 3.888 4 N -0.419 5.419 5 C 0.095 3.905 6 C 0.035 3.965 7 C -0.263 4.263 8 C -0.031 4.031 9 C -0.232 4.232 10 C 0.136 3.864 11 C -0.426 4.426 12 H 0.091 0.909 13 C 0.070 3.930 14 N -0.760 5.760 15 Si 0.917 3.083 16 H -0.255 1.255 17 H -0.267 1.267 18 H -0.269 1.269 19 C -0.209 4.209 20 C 0.145 3.855 21 F -0.159 7.159 22 C -0.129 4.129 23 C 0.110 3.890 24 F -0.125 7.125 25 H 0.173 0.827 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.291 0.709 29 H 0.132 0.868 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 3.209 -1.644 3.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.039 4.039 3 C -0.025 4.025 4 N -0.127 5.127 5 C -0.068 4.068 6 C 0.032 3.968 7 C -0.266 4.266 8 C -0.050 4.050 9 C -0.251 4.251 10 C 0.132 3.868 11 C -0.453 4.453 12 H 0.109 0.891 13 C -0.153 4.153 14 N -0.382 5.382 15 Si 0.740 3.260 16 H -0.179 1.179 17 H -0.192 1.192 18 H -0.194 1.194 19 C -0.229 4.229 20 C 0.125 3.875 21 F -0.138 7.138 22 C -0.154 4.154 23 C 0.085 3.915 24 F -0.104 7.104 25 H 0.190 0.810 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.150 0.850 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.804 2.265 -1.260 4.603 hybrid contribution 1.515 0.745 0.149 1.695 sum -2.289 3.010 -1.111 3.941 Atomic orbital electron populations 1.81181 1.11435 1.06955 1.08462 1.24820 0.91534 0.93725 0.93779 1.16233 0.86414 0.90815 1.09047 1.67475 1.10972 1.24171 1.10124 1.23166 0.87104 0.98949 0.97549 1.19944 0.94987 0.91374 0.90525 1.17646 0.88439 1.21909 0.98610 1.20161 0.93901 0.95897 0.95006 1.20720 0.93287 1.12144 0.98998 1.17506 0.93303 0.86945 0.89013 1.19898 0.91696 1.14135 1.19546 0.89050 1.26178 1.02052 0.93578 0.93471 1.69777 1.39254 1.06957 1.22193 0.86095 0.80388 0.80027 0.79539 1.17869 1.19168 1.19434 1.20954 0.90356 1.10071 1.01531 1.17276 0.89710 0.97574 0.82913 1.91377 1.79209 1.87585 1.55612 1.21771 0.90828 1.00159 1.02666 1.18424 0.90614 0.82514 0.99930 1.91534 1.80096 1.49351 1.89400 0.80975 0.87910 0.87731 0.89756 0.85028 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.69 18.54 41.84 0.78 -5.91 16 2 C 0.28 4.35 15.16 -22.48 -0.34 4.01 16 3 C 0.11 1.70 6.60 -84.82 -0.56 1.14 16 4 N -0.42 -6.67 10.26 -10.69 -0.11 -6.78 16 5 C 0.10 1.50 10.03 -17.13 -0.17 1.33 16 6 C 0.03 0.56 5.32 -104.67 -0.56 0.00 16 7 C -0.26 -4.85 5.52 -104.57 -0.58 -5.43 16 8 C -0.03 -0.56 9.46 -39.65 -0.38 -0.93 16 9 C -0.23 -4.59 9.73 -39.27 -0.38 -4.97 16 10 C 0.14 3.01 5.57 -106.81 -0.60 2.42 16 11 C -0.43 -9.35 9.03 -37.86 -0.34 -9.69 16 12 H 0.09 1.88 7.91 -52.49 -0.42 1.47 16 13 C 0.07 1.48 5.13 -17.32 -0.09 1.39 16 14 N -0.76 -16.69 10.96 55.55 0.61 -16.08 16 15 Si 0.92 15.62 29.60 -169.99 -5.03 10.58 16 16 H -0.26 -4.30 7.11 56.52 0.40 -3.90 16 17 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 18 H -0.27 -4.56 7.11 56.52 0.40 -4.16 16 19 C -0.21 -4.67 8.60 -39.22 -0.34 -5.01 16 20 C 0.14 2.98 7.11 -39.48 -0.28 2.70 16 21 F -0.16 -3.19 15.87 2.25 0.04 -3.16 16 22 C -0.13 -1.81 9.64 -38.85 -0.37 -2.19 16 23 C 0.11 1.55 7.29 -38.89 -0.28 1.27 16 24 F -0.13 -1.72 16.81 2.25 0.04 -1.69 16 25 H 0.17 2.61 7.78 -52.49 -0.41 2.20 16 26 H 0.10 1.55 8.04 -52.48 -0.42 1.13 16 27 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 28 H 0.29 5.74 8.29 -40.82 -0.34 5.40 16 29 H 0.13 3.09 6.16 -52.48 -0.32 2.77 16 30 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -22.78 291.86 -6.10 -28.88 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -1.55 Total: 3.72 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -5.27 Total: -13.96 kcal Atomic # 7 Polarization: -30.06 SS G_CDS: 1.27 Total: -28.78 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.07 Total: -4.84 kcal Atomic # 14 Polarization: 15.62 SS G_CDS: -5.03 Total: 10.58 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -22.78 -6.10 -28.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238991353.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.136 kcal (2) G-P(sol) polarization free energy of solvation -22.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds