Wall clock time and date at job start Tue Mar 31 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 N 1.32992 * 119.60297 * 63.16619 * 3 2 1 5 5 C 1.31257 * 121.79537 * 180.02562 * 4 3 2 6 6 C 1.40018 * 120.77614 * 359.97438 * 5 4 3 7 7 C 1.47727 * 120.43867 * 180.02562 * 6 5 4 8 8 C 1.39143 * 120.26980 * 130.00437 * 7 6 5 9 9 C 1.38104 * 120.17526 * 180.02562 * 8 7 6 10 10 C 1.38828 * 120.73083 * 359.97180 * 9 8 7 11 11 C 1.37735 * 120.53564 * 0.02845 * 10 9 8 12 12 F 1.35102 * 120.09637 * 179.97438 * 11 10 9 13 13 C 1.41052 * 119.80105 * 359.69805 * 11 10 9 14 14 C 1.40718 * 120.35595 * 180.28023 * 13 11 10 15 15 H 1.08001 * 120.00559 * 143.47391 * 14 13 11 16 16 C 1.40145 * 119.99599 * 323.47501 * 14 13 11 17 17 N 1.30750 * 120.00071 * 339.92965 * 16 14 13 18 18 Si 1.86803 * 120.00341 * 159.93526 * 16 14 13 19 19 H 1.48497 * 109.47378 * 89.99311 * 18 16 14 20 20 H 1.48495 * 109.47194 * 210.00030 * 18 16 14 21 21 H 1.48504 * 109.46531 * 329.99778 * 18 16 14 22 22 C 1.40018 * 119.12460 * 0.02562 * 6 5 4 23 23 C 1.38415 * 118.35990 * 0.02562 * 22 6 5 24 24 F 1.35105 * 120.42850 * 180.02562 * 23 22 6 25 25 H 1.08002 * 119.61081 * 179.97438 * 5 4 3 26 26 H 1.08005 * 119.91250 * 359.97438 * 8 7 6 27 27 H 1.08005 * 119.63911 * 179.97438 * 9 8 7 28 28 H 1.07996 * 119.73542 * 179.97438 * 10 9 8 29 29 H 0.96997 * 120.00316 * 180.02562 * 17 16 14 30 30 H 1.07996 * 120.82391 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2252 -0.5210 -1.0318 5 6 4.5368 -0.5436 -1.0764 6 6 5.2986 -0.0130 -0.0282 7 6 6.7744 -0.0417 -0.0864 8 6 7.5087 1.1144 0.1592 9 6 8.8883 1.0854 0.1037 10 6 9.5617 -0.0911 -0.1956 11 6 8.8645 -1.2528 -0.4437 12 9 9.5288 -2.3926 -0.7347 13 6 7.4551 -1.2501 -0.3874 14 6 6.7313 -2.4316 -0.6331 15 1 5.8311 -2.6396 -0.0739 16 6 7.1788 -3.3384 -1.6034 17 7 8.0050 -2.9428 -2.5364 18 14 6.5947 -5.1123 -1.5641 19 1 5.3548 -5.2433 -2.3708 20 1 7.6483 -5.9930 -2.1292 21 1 6.3165 -5.5108 -0.1609 22 6 4.6430 0.5453 1.0760 23 6 3.2589 0.5491 1.0860 24 9 2.5836 1.0775 2.1301 25 1 5.0344 -0.9765 -1.9317 26 1 6.9983 2.0371 0.3929 27 1 9.4496 1.9880 0.2954 28 1 10.6409 -0.0955 -0.2351 29 1 8.3144 -3.5703 -3.2082 30 1 5.2034 0.9618 1.8998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238996617.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:24 Heat of formation + Delta-G solvation = -15.113807 kcal Electronic energy + Delta-G solvation = -21104.987593 eV Core-core repulsion = 17500.764163 eV Total energy + Delta-G solvation = -3604.223430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.061 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.17838 -48.94016 -41.30021 -39.08009 -37.68246 -35.58920 -34.26936 -32.69772 -31.45070 -30.27902 -27.33412 -25.91637 -24.62141 -22.76580 -22.23599 -20.64671 -19.37146 -18.65774 -18.36963 -17.26619 -17.16825 -17.01477 -16.30356 -16.15325 -15.98834 -15.66193 -15.24425 -14.94102 -14.67809 -14.48234 -14.36515 -14.06248 -13.92167 -13.59120 -13.43179 -13.24987 -13.09679 -12.95855 -12.44221 -12.33281 -11.98812 -11.48668 -10.98819 -10.94063 -10.75826 -10.08551 -9.28720 -8.99916 -8.73515 -6.40043 -0.72889 0.01495 0.76927 0.95405 1.29436 1.40725 1.46001 1.51024 1.69812 2.18967 2.27452 2.66283 2.71862 2.88533 3.45804 3.48990 3.63914 3.91750 4.14821 4.22078 4.39078 4.47202 4.65113 4.75528 4.88738 5.11207 5.14735 5.25834 5.45559 5.62302 5.74297 5.96011 5.97582 6.12494 6.20987 6.45802 6.62990 6.79947 6.88827 8.25395 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.006405 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.815317 B = 4370.629758 C = 5776.412764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.288 3.712 3 C 0.115 3.885 4 N -0.439 5.439 5 C 0.120 3.880 6 C 0.028 3.972 7 C -0.172 4.172 8 C -0.068 4.068 9 C -0.202 4.202 10 C -0.129 4.129 11 C 0.003 3.997 12 F -0.159 7.159 13 C 0.088 3.912 14 C -0.480 4.480 15 H 0.085 0.915 16 C 0.052 3.948 17 N -0.797 5.797 18 Si 0.953 3.047 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.261 1.261 22 C -0.108 4.108 23 C 0.116 3.884 24 F -0.120 7.120 25 H 0.169 0.831 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.119 0.881 29 H 0.290 0.710 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 5.628 4.627 7.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.028 4.028 3 C -0.022 4.022 4 N -0.148 5.148 5 C -0.042 4.042 6 C 0.025 3.975 7 C -0.174 4.174 8 C -0.086 4.086 9 C -0.221 4.221 10 C -0.148 4.148 11 C -0.017 4.017 12 F -0.138 7.138 13 C 0.085 3.915 14 C -0.508 4.508 15 H 0.103 0.897 16 C -0.168 4.168 17 N -0.420 5.420 18 Si 0.776 3.224 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.185 1.185 22 C -0.133 4.133 23 C 0.091 3.909 24 F -0.098 7.098 25 H 0.186 0.814 26 H 0.157 0.843 27 H 0.157 0.843 28 H 0.137 0.863 29 H 0.101 0.899 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.562 5.184 3.743 6.889 hybrid contribution 0.992 -0.971 0.347 1.431 sum -1.570 4.213 4.090 6.078 Atomic orbital electron populations 1.81177 1.11941 1.08859 1.07845 1.24903 0.91598 0.93202 0.93122 1.16369 0.86151 1.05873 0.93768 1.67537 1.11164 1.13176 1.22963 1.23118 0.86576 0.95459 0.99065 1.19782 0.94072 0.91622 0.92043 1.18339 0.89557 0.93317 1.16202 1.21064 0.93803 0.96662 0.97057 1.20577 0.94158 0.97082 1.10298 1.21057 0.99673 0.92441 1.01658 1.18203 0.90815 0.82727 1.09971 1.91294 1.80576 1.50266 1.91634 1.17694 0.90099 0.93262 0.90457 1.19434 1.10205 1.03041 1.18114 0.89691 1.26390 0.93475 1.03372 0.93518 1.69725 1.24419 1.38349 1.09507 0.85594 0.78966 0.78073 0.79812 1.18588 1.19747 1.18498 1.21920 0.90708 1.00825 0.99893 1.18238 0.90565 0.97403 0.84691 1.91555 1.80014 1.83471 1.54779 0.81391 0.84266 0.84319 0.86317 0.89876 0.79928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -14.05 18.54 19.00 0.35 -13.70 16 2 C 0.29 9.07 15.16 88.33 1.34 10.41 16 3 C 0.12 3.51 6.60 40.62 0.27 3.78 16 4 N -0.44 -14.74 10.26 -187.70 -1.92 -16.67 16 5 C 0.12 4.12 9.41 85.21 0.80 4.92 16 6 C 0.03 0.90 4.97 -19.91 -0.10 0.80 16 7 C -0.17 -6.28 5.54 -19.64 -0.11 -6.39 16 8 C -0.07 -2.12 9.51 22.46 0.21 -1.91 16 9 C -0.20 -6.48 10.02 22.38 0.22 -6.26 16 10 C -0.13 -4.92 9.99 22.29 0.22 -4.70 16 11 C 0.00 0.14 6.68 22.84 0.15 0.29 16 12 F -0.16 -7.87 14.26 44.97 0.64 -7.23 16 13 C 0.09 3.91 5.40 -21.07 -0.11 3.79 16 14 C -0.48 -21.91 6.68 23.34 0.16 -21.75 16 15 H 0.09 3.79 7.26 -2.91 -0.02 3.77 16 16 C 0.05 2.38 4.50 85.32 0.38 2.77 16 17 N -0.80 -38.31 11.12 21.86 0.24 -38.07 16 18 Si 0.95 36.37 29.61 68.60 2.03 38.40 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 C -0.11 -2.80 9.65 22.74 0.22 -2.58 16 23 C 0.12 3.09 7.29 22.72 0.17 3.26 16 24 F -0.12 -3.03 16.81 44.97 0.76 -2.28 16 25 H 0.17 6.30 7.33 -2.91 -0.02 6.28 16 26 H 0.14 3.31 8.04 -2.91 -0.02 3.29 16 27 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.29 13.00 8.29 -92.71 -0.77 12.23 16 30 H 0.18 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -51.30 288.43 7.14 -44.16 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.22 Total: 8.97 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 3.83 Total: -13.57 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -1.33 Total: -68.44 kcal Atomic # 9 Polarization: -10.90 SS G_CDS: 1.40 Total: -9.51 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -51.30 7.14 -44.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238996617.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.042 kcal (2) G-P(sol) polarization free energy of solvation -51.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds