Wall clock time and date at job start Tue Mar 31 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86790 * 119.99971 * 2 1 4 4 H 1.48504 * 109.47544 * 275.40616 * 3 2 1 5 5 H 1.48507 * 109.47178 * 35.40625 * 3 2 1 6 6 H 1.48504 * 109.47333 * 155.40173 * 3 2 1 7 7 C 1.39934 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99926 * 342.11223 * 7 2 1 9 9 C 1.41316 * 119.99597 * 161.83805 * 7 2 1 10 10 C 1.40785 * 120.21101 * 329.91455 * 9 7 2 11 11 C 1.37615 * 120.02133 * 179.73768 * 10 9 7 12 12 C 1.38509 * 120.45695 * 0.51496 * 11 10 9 13 13 C 1.39562 * 120.41624 * 359.76465 * 12 11 10 14 14 C 1.48362 * 120.01806 * 179.97438 * 13 12 11 15 15 C 1.39350 * 120.06030 * 129.74484 * 14 13 12 16 16 C 1.37995 * 120.02390 * 179.68117 * 15 14 13 17 17 C 1.38676 * 120.18295 * 0.62357 * 16 15 14 18 18 C 1.39381 * 120.02557 * 359.65998 * 17 16 15 19 19 C 1.38334 * 119.94927 * 0.02562 * 18 17 16 20 20 O 1.36521 * 108.62687 * 180.02562 * 18 17 16 21 21 C 1.43980 * 105.47877 * 342.69469 * 20 18 17 22 22 O 1.36528 * 131.37785 * 179.67686 * 17 16 15 23 23 C 1.39112 * 119.96492 * 359.97144 * 13 12 11 24 24 F 1.35098 * 120.22304 * 179.97438 * 23 13 12 25 25 H 0.96995 * 120.00043 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.98894 * 0.02562 * 10 9 7 27 27 H 1.08006 * 119.77199 * 180.23781 * 11 10 9 28 28 H 1.07995 * 119.79398 * 179.73995 * 12 11 10 29 29 H 1.08003 * 119.98587 * 359.97438 * 15 14 13 30 30 H 1.07994 * 119.90733 * 180.28204 * 16 15 14 31 31 H 1.07999 * 120.03582 * 180.02562 * 19 18 17 32 32 H 1.09000 * 110.56766 * 268.60747 * 21 20 18 33 33 H 1.09003 * 110.56579 * 145.74608 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3758 2.1124 -1.3938 5 1 1.5017 2.6170 0.8112 6 1 3.5925 1.4099 0.5828 7 6 2.0082 -1.2119 -0.0005 8 1 1.5073 -2.1246 0.2863 9 6 3.3685 -1.2422 -0.3820 10 6 3.8631 -0.3125 -1.3164 11 6 5.1897 -0.3421 -1.6811 12 6 6.0449 -1.2894 -1.1428 13 6 5.5732 -2.2236 -0.2194 14 6 6.4968 -3.2348 0.3512 15 6 6.5602 -3.4226 1.7305 16 6 7.4147 -4.3679 2.2600 17 6 8.2219 -5.1245 1.4238 18 6 8.1667 -4.9365 0.0439 19 6 7.3065 -3.9943 -0.4909 20 8 9.0483 -5.7941 -0.5486 21 6 9.9366 -6.2185 0.5020 22 8 9.1384 -6.0996 1.6941 23 6 4.2365 -2.2061 0.1657 24 9 3.7743 -3.1082 1.0587 25 1 -0.4850 0.8400 0.0004 26 1 3.2022 0.4272 -1.7436 27 1 5.5657 0.3755 -2.3954 28 1 7.0831 -1.3055 -1.4397 29 1 5.9368 -2.8314 2.3850 30 1 7.4590 -4.5152 3.3290 31 1 7.2624 -3.8477 -1.5600 32 1 10.8059 -5.5633 0.5566 33 1 10.2444 -7.2529 0.3486 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240898741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:45 Heat of formation + Delta-G solvation = -80.579501 kcal Electronic energy + Delta-G solvation = -21412.082670 eV Core-core repulsion = 17896.187989 eV Total energy + Delta-G solvation = -3515.894682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.31475 -43.12611 -39.88753 -38.47439 -37.29428 -35.64088 -33.25752 -31.78872 -31.51228 -29.55103 -27.14006 -26.70499 -24.58862 -23.99308 -22.51830 -22.38027 -19.64539 -18.91849 -18.53934 -18.30286 -18.12528 -17.27016 -16.96476 -16.60634 -16.13840 -15.76702 -15.48344 -15.20632 -15.00451 -14.87830 -14.63239 -14.02370 -13.95801 -13.90453 -13.75192 -13.68440 -13.30335 -12.79839 -12.62840 -12.25666 -12.14141 -11.84039 -11.68571 -11.61537 -11.04707 -10.05191 -9.62468 -9.42615 -8.94834 -8.84528 -6.57764 -0.17128 0.17450 0.63311 0.71018 1.26761 1.41204 1.50323 1.76607 2.10489 2.43295 2.48679 2.60791 3.29655 3.43827 3.65420 3.80742 3.84306 4.06382 4.10877 4.20187 4.27185 4.35760 4.48499 4.52961 4.72210 4.87365 4.93302 5.00971 5.08940 5.19564 5.31819 5.37998 5.55840 5.60048 5.74081 5.84084 6.02013 6.09845 6.27180 6.59053 6.68970 8.13927 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.035040 B = 0.004221 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.903601 B = 6631.228397 C = 7002.200253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.048 3.952 3 Si 0.967 3.033 4 H -0.245 1.245 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.482 4.482 8 H 0.049 0.951 9 C 0.047 3.953 10 C -0.223 4.223 11 C -0.079 4.079 12 C -0.183 4.183 13 C -0.048 4.048 14 C -0.034 4.034 15 C -0.098 4.098 16 C -0.094 4.094 17 C 0.020 3.980 18 C 0.023 3.977 19 C -0.090 4.090 20 O -0.322 6.322 21 C 0.204 3.796 22 O -0.320 6.320 23 C -0.019 4.019 24 F -0.161 7.161 25 H 0.297 0.703 26 H 0.112 0.888 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.393 -3.888 0.132 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.167 4.167 3 Si 0.788 3.212 4 H -0.169 1.169 5 H -0.203 1.203 6 H -0.172 1.172 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.044 3.956 10 C -0.242 4.242 11 C -0.097 4.097 12 C -0.202 4.202 13 C -0.049 4.049 14 C -0.035 4.035 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.025 4.025 18 C -0.022 4.022 19 C -0.108 4.108 20 O -0.239 6.239 21 C 0.093 3.907 22 O -0.237 6.237 23 C -0.039 4.039 24 F -0.140 7.140 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.165 0.835 28 H 0.162 0.838 29 H 0.153 0.847 30 H 0.177 0.823 31 H 0.164 0.836 32 H 0.124 0.876 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 18.156 -4.079 0.147 18.610 hybrid contribution -0.634 0.030 0.284 0.696 sum 17.522 -4.049 0.431 17.989 Atomic orbital electron populations 1.69724 1.09400 1.31865 1.35990 1.26910 0.95416 1.04361 0.90046 0.85471 0.79693 0.75728 0.80280 1.16932 1.20263 1.17195 1.19305 0.94217 0.95832 1.41769 0.93275 1.17814 0.92648 0.92670 0.92445 1.21122 0.97302 1.03597 1.02159 1.21052 0.92154 0.97979 0.98549 1.20823 1.00418 0.97816 1.01144 1.18522 0.89979 0.97226 0.99171 1.18479 0.95633 0.96133 0.93232 1.21134 0.98038 0.98163 0.94280 1.20147 0.96021 0.94447 1.00662 1.19976 0.96747 0.92812 0.92933 1.19670 0.97208 0.94882 0.90395 1.20086 0.95798 0.93841 1.01107 1.87330 1.43066 1.58328 1.35167 1.26162 0.89441 1.05277 0.69783 1.87312 1.44907 1.52334 1.39140 1.18084 0.92324 0.95995 0.97544 1.91280 1.89788 1.66333 1.66621 0.89237 0.87043 0.83488 0.83808 0.84665 0.82323 0.83644 0.87558 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.02 13.93 21.83 0.30 -45.71 16 2 C 0.05 2.54 5.40 85.25 0.46 3.00 16 3 Si 0.97 40.68 24.52 68.60 1.68 42.37 16 4 H -0.24 -9.33 6.71 99.48 0.67 -8.66 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.25 -10.57 6.87 99.48 0.68 -9.89 16 7 C -0.48 -27.48 9.25 23.44 0.22 -27.26 16 8 H 0.05 3.12 7.98 -2.91 -0.02 3.09 16 9 C 0.05 2.41 5.10 -21.27 -0.11 2.30 16 10 C -0.22 -9.78 7.16 22.75 0.16 -9.61 16 11 C -0.08 -2.85 10.01 22.19 0.22 -2.63 16 12 C -0.18 -6.38 9.50 22.65 0.22 -6.16 16 13 C -0.05 -1.91 5.47 -20.05 -0.11 -2.02 16 14 C -0.03 -1.19 5.31 -20.05 -0.11 -1.30 16 15 C -0.10 -3.14 8.85 22.48 0.20 -2.94 16 16 C -0.09 -2.59 10.04 22.32 0.22 -2.37 16 17 C 0.02 0.55 7.15 22.65 0.16 0.71 16 18 C 0.02 0.66 7.14 22.57 0.16 0.82 16 19 C -0.09 -2.77 9.51 22.56 0.21 -2.55 16 20 O -0.32 -8.12 11.40 -76.30 -0.87 -8.99 16 21 C 0.20 3.46 8.89 113.37 1.01 4.47 16 22 O -0.32 -7.74 11.40 -76.38 -0.87 -8.61 16 23 C -0.02 -0.93 7.16 23.11 0.17 -0.77 16 24 F -0.16 -8.05 15.40 44.97 0.69 -7.36 16 25 H 0.30 14.36 8.30 -92.71 -0.77 13.59 16 26 H 0.11 4.79 4.75 -2.91 -0.01 4.77 16 27 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 28 H 0.14 3.98 8.03 -2.91 -0.02 3.96 16 29 H 0.14 4.40 7.79 -2.91 -0.02 4.38 16 30 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.15 4.09 8.04 -2.91 -0.02 4.07 16 32 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -64.48 290.56 5.12 -59.36 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.10 Total: 15.26 kcal Atomic # 6 Polarization: -49.39 SS G_CDS: 3.09 Total: -46.31 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.30 Total: -45.71 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.74 Total: -17.60 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 0.69 Total: -7.36 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.68 Total: 42.37 kcal Total: -64.48 5.12 -59.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240898741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.224 kcal (2) G-P(sol) polarization free energy of solvation -64.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds