Wall clock time and date at job start Tue Mar 31 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86800 * 119.99705 * 2 1 4 4 H 1.48503 * 109.47169 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47052 * 120.00534 * 3 2 1 6 6 H 1.48502 * 109.47373 * 240.00488 * 3 2 1 7 7 C 1.39957 * 120.00429 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00503 * 206.59658 * 7 2 1 9 9 C 1.40928 * 119.99871 * 26.58791 * 7 2 1 10 10 C 1.40954 * 120.13082 * 25.38157 * 9 7 2 11 11 C 1.36162 * 119.90468 * 179.97438 * 10 9 7 12 12 C 1.40080 * 120.18025 * 359.97438 * 11 10 9 13 13 C 1.47899 * 119.86666 * 180.02562 * 12 11 10 14 14 C 1.39671 * 120.08198 * 359.97438 * 13 12 11 15 15 C 1.37841 * 120.00577 * 179.97438 * 14 13 12 16 16 C 1.38817 * 120.20945 * 359.97438 * 15 14 13 17 17 C 1.39536 * 120.05644 * 0.02562 * 16 15 14 18 18 C 1.38192 * 119.97226 * 359.72987 * 17 16 15 19 19 O 1.36522 * 108.60098 * 180.02562 * 17 16 15 20 20 C 1.43982 * 105.47037 * 342.68101 * 19 17 16 21 21 O 1.36452 * 131.36438 * 180.02562 * 16 15 14 22 22 C 1.39840 * 120.26444 * 359.97438 * 12 11 10 23 23 C 1.36530 * 120.09542 * 359.78604 * 22 12 11 24 24 F 1.35095 * 120.09574 * 180.23332 * 23 22 12 25 25 H 0.97000 * 119.99532 * 185.88535 * 1 2 3 26 26 H 1.07996 * 120.05040 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.91139 * 179.97438 * 11 10 9 28 28 H 1.08008 * 119.99558 * 359.95944 * 14 13 12 29 29 H 1.07999 * 119.89300 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.04261 * 180.26303 * 18 17 16 31 31 H 1.08996 * 110.56733 * 268.63029 * 20 19 17 32 32 H 1.08997 * 110.56335 * 145.77097 * 20 19 17 33 33 H 1.07995 * 119.95272 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 1.2773 2.7465 0.0006 5 1 3.0962 1.6964 1.2124 6 1 3.0961 1.6966 -1.2126 7 6 2.0084 -1.2120 -0.0005 8 1 3.0026 -1.2617 0.4181 9 6 1.4156 -2.3677 -0.5473 10 6 0.4170 -2.2509 -1.5353 11 6 -0.1523 -3.3706 -2.0608 12 6 0.2521 -4.6382 -1.6226 13 6 -0.3705 -5.8499 -2.1986 14 6 -1.3601 -5.7308 -3.1770 15 6 -1.9390 -6.8611 -3.7131 16 6 -1.5413 -8.1200 -3.2841 17 6 -0.5532 -8.2455 -2.3069 18 6 0.0340 -7.1158 -1.7698 19 8 -0.3464 -9.5731 -2.0647 20 6 -1.5004 -10.2458 -2.6022 21 8 -1.9512 -9.3688 -3.6509 22 6 1.2428 -4.7626 -0.6436 23 6 1.8245 -3.6474 -0.1127 24 9 2.7850 -3.7677 0.8297 25 1 -0.4849 -0.8357 0.0861 26 1 0.1039 -1.2748 -1.8750 27 1 -0.9177 -3.2813 -2.8175 28 1 -1.6720 -4.7530 -3.5134 29 1 -2.7043 -6.7669 -4.4693 30 1 0.8019 -7.2117 -1.0164 31 1 -2.2700 -10.3555 -1.8382 32 1 -1.2219 -11.2179 -3.0090 33 1 1.5510 -5.7424 -0.3098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240898747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:48 Heat of formation + Delta-G solvation = -74.651379 kcal Electronic energy + Delta-G solvation = -21065.756459 eV Core-core repulsion = 17550.118841 eV Total energy + Delta-G solvation = -3515.637619 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.47249 -41.90052 -38.53880 -36.92058 -36.10268 -34.31481 -31.13672 -30.46506 -29.28268 -28.52350 -26.00591 -24.93213 -22.95461 -22.70718 -20.92148 -20.68161 -18.40148 -17.70435 -17.58549 -17.08242 -16.27207 -15.33936 -15.17797 -15.06992 -14.32497 -14.27473 -14.19054 -13.81933 -13.65538 -13.31131 -12.82761 -12.81109 -12.77367 -12.61462 -12.07872 -11.73518 -11.50110 -11.34180 -11.23312 -10.64920 -10.59205 -10.44592 -10.04514 -9.83211 -9.32680 -8.73632 -8.22420 -7.90883 -7.59294 -7.23743 -4.71315 1.19535 1.52511 2.48205 2.54932 2.93882 3.00765 3.09609 3.21441 3.58759 3.77393 3.89924 4.36567 4.69821 4.74391 4.88539 5.12402 5.25010 5.33997 5.42131 5.48501 5.69768 5.75922 5.87215 6.03866 6.31347 6.39737 6.46087 6.53341 6.67181 6.70195 6.85344 7.05412 7.23930 7.37970 7.41602 7.50066 7.64140 7.70377 7.89804 8.32244 8.45277 9.64074 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.036756 B = 0.003652 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.589768 B = 7665.625567 C = 8302.840545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.036 3.964 3 Si 1.068 2.932 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.478 4.478 8 H 0.088 0.912 9 C 0.075 3.925 10 C -0.211 4.211 11 C -0.055 4.055 12 C -0.199 4.199 13 C 0.038 3.962 14 C -0.137 4.137 15 C -0.083 4.083 16 C -0.017 4.017 17 C 0.043 3.957 18 C -0.128 4.128 19 O -0.314 6.314 20 C 0.214 3.786 21 O -0.315 6.315 22 C -0.081 4.081 23 C -0.033 4.033 24 F -0.161 7.161 25 H 0.304 0.696 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -8.624 -4.095 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.189 4.189 3 Si 0.890 3.110 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.504 4.504 8 H 0.106 0.894 9 C 0.071 3.929 10 C -0.231 4.231 11 C -0.073 4.073 12 C -0.200 4.200 13 C 0.038 3.962 14 C -0.155 4.155 15 C -0.102 4.102 16 C -0.061 4.061 17 C -0.001 4.001 18 C -0.146 4.146 19 O -0.231 6.231 20 C 0.102 3.898 21 O -0.232 6.232 22 C -0.100 4.100 23 C -0.052 4.052 24 F -0.140 7.140 25 H 0.118 0.882 26 H 0.133 0.867 27 H 0.121 0.879 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.524 -7.180 -4.185 9.026 hybrid contribution 0.255 -2.157 0.294 2.192 sum -3.269 -9.337 -3.890 10.630 Atomic orbital electron populations 1.70479 1.08235 1.34874 1.25084 1.27307 0.95573 1.04797 0.91236 0.83577 0.75760 0.73116 0.78543 1.19398 1.19654 1.19495 1.20776 1.03694 0.94059 1.31871 0.89414 1.17787 0.92241 0.91281 0.91609 1.20651 1.03601 0.97774 1.01029 1.20485 0.97482 0.91716 0.97632 1.17553 1.05378 0.90793 1.06302 1.18538 0.93201 0.91399 0.93084 1.20955 0.98242 0.97730 0.98593 1.19884 1.00999 0.87731 1.01601 1.19706 0.99959 0.86381 1.00020 1.19645 0.98015 0.84161 0.98295 1.20077 1.03474 0.88179 1.02887 1.87325 1.41924 1.15660 1.78180 1.25467 0.84725 0.93273 0.86320 1.87260 1.76606 1.15178 1.44172 1.20381 0.96535 0.96382 0.96703 1.17297 0.97151 0.94189 0.96609 1.91296 1.62352 1.96787 1.63583 0.88176 0.86665 0.87860 0.84597 0.85431 0.85102 0.90534 0.85824 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.43 12.31 55.55 0.68 -17.75 16 2 C 0.04 0.83 4.90 -17.33 -0.08 0.75 16 3 Si 1.07 19.59 30.01 -169.99 -5.10 14.48 16 4 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 6 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.48 -11.89 8.68 -37.92 -0.33 -12.22 16 8 H 0.09 2.17 7.80 -52.49 -0.41 1.77 16 9 C 0.08 1.86 5.30 -106.73 -0.57 1.30 16 10 C -0.21 -4.87 7.92 -39.30 -0.31 -5.18 16 11 C -0.05 -1.13 9.35 -39.64 -0.37 -1.50 16 12 C -0.20 -4.10 5.90 -104.65 -0.62 -4.71 16 13 C 0.04 0.70 5.88 -104.88 -0.62 0.08 16 14 C -0.14 -2.19 9.42 -39.19 -0.37 -2.56 16 15 C -0.08 -1.25 10.04 -39.51 -0.40 -1.65 16 16 C -0.02 -0.28 7.16 -38.88 -0.28 -0.56 16 17 C 0.04 0.72 7.14 -39.11 -0.28 0.44 16 18 C -0.13 -2.25 9.43 -39.07 -0.37 -2.62 16 19 O -0.31 -4.83 11.40 -45.76 -0.52 -5.35 16 20 C 0.21 2.48 8.88 101.05 0.90 3.38 16 21 O -0.32 -4.61 11.40 -45.53 -0.52 -5.13 16 22 C -0.08 -1.76 9.33 -39.60 -0.37 -2.13 16 23 C -0.03 -0.79 7.26 -39.08 -0.28 -1.07 16 24 F -0.16 -3.92 16.70 2.25 0.04 -3.88 16 25 H 0.30 7.50 6.79 -40.82 -0.28 7.22 16 26 H 0.12 2.68 6.52 -52.49 -0.34 2.33 16 27 H 0.10 1.83 6.16 -52.49 -0.32 1.50 16 28 H 0.14 1.94 6.17 -52.48 -0.32 1.62 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.13 2.22 6.17 -52.48 -0.32 1.90 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.11 2.10 6.16 -52.49 -0.32 1.78 16 LS Contribution 289.83 15.07 4.37 4.37 Total: -1.00 -26.83 289.83 -7.78 -34.61 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -2.39 Total: 6.89 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -4.34 Total: -28.25 kcal Atomic # 7 Polarization: -18.43 SS G_CDS: 0.68 Total: -17.75 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.04 Total: -10.49 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.10 Total: 14.48 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.83 -7.78 -34.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240898747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.037 kcal (2) G-P(sol) polarization free energy of solvation -26.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds