Wall clock time and date at job start Tue Mar 31 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86796 * 119.99733 * 2 1 4 4 H 1.48502 * 109.47268 * 269.99671 * 3 2 1 5 5 H 1.48501 * 109.47396 * 30.00105 * 3 2 1 6 6 H 1.48503 * 109.46742 * 149.99960 * 3 2 1 7 7 C 1.39955 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99582 * 197.98251 * 7 2 1 9 9 C 1.40994 * 120.00554 * 17.98019 * 7 2 1 10 10 C 1.40988 * 120.09899 * 204.70700 * 9 7 2 11 11 C 1.36199 * 119.93044 * 179.73850 * 10 9 7 12 12 C 1.40000 * 120.13241 * 0.54002 * 11 10 9 13 13 C 1.47858 * 119.89426 * 179.75897 * 12 11 10 14 14 C 1.39712 * 120.07753 * 129.72792 * 13 12 11 15 15 C 1.37828 * 119.99714 * 180.02562 * 14 13 12 16 16 C 1.38832 * 120.21519 * 359.95778 * 15 14 13 17 17 C 1.39549 * 120.05778 * 0.02562 * 16 15 14 18 18 C 1.38177 * 119.97496 * 0.03112 * 17 16 15 19 19 O 1.36526 * 108.59462 * 180.02562 * 17 16 15 20 20 C 1.43978 * 105.47313 * 17.30107 * 19 17 16 21 21 O 1.36449 * 131.36166 * 179.70434 * 16 15 14 22 22 C 1.40200 * 120.20094 * 359.48241 * 12 11 10 23 23 F 1.35099 * 119.96611 * 180.25378 * 22 12 11 24 24 C 1.36441 * 120.06803 * 0.23173 * 22 12 11 25 25 H 0.96997 * 119.99928 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.03517 * 0.04831 * 10 9 7 27 27 H 1.08001 * 119.93140 * 180.29854 * 11 10 9 28 28 H 1.07996 * 119.99917 * 359.97438 * 14 13 12 29 29 H 1.07997 * 119.89406 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.04176 * 179.97438 * 18 17 16 31 31 H 1.08997 * 110.56274 * 91.37792 * 20 19 17 32 32 H 1.09000 * 110.56109 * 214.22912 * 20 19 17 33 33 H 1.08001 * 120.06924 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4401 0.7001 7 6 2.0081 -1.2121 -0.0005 8 1 3.0485 -1.2351 0.2882 9 6 1.3548 -2.4032 -0.3780 10 6 1.8271 -3.6470 0.0885 11 6 1.1902 -4.7951 -0.2740 12 6 0.0743 -4.7433 -1.1178 13 6 -0.6099 -5.9933 -1.5123 14 6 -1.9959 -6.1057 -1.3768 15 6 -2.6319 -7.2719 -1.7444 16 6 -1.8998 -8.3373 -2.2508 17 6 -0.5153 -8.2310 -2.3888 18 6 0.1278 -7.0647 -2.0207 19 8 -0.0380 -9.4020 -2.9036 20 6 -1.1842 -10.0723 -3.4603 21 8 -2.2851 -9.5761 -2.6734 22 6 -0.3998 -3.5095 -1.5853 23 9 -1.4802 -3.4648 -2.3953 24 6 0.2284 -2.3539 -1.2227 25 1 -0.4850 0.8400 -0.0004 26 1 2.6900 -3.6890 0.7365 27 1 1.5490 -5.7475 0.0872 28 1 -2.5687 -5.2791 -0.9831 29 1 -3.7033 -7.3571 -1.6386 30 1 1.1993 -6.9815 -2.1267 31 1 -1.3094 -9.8084 -4.5104 32 1 -1.0899 -11.1520 -3.3444 33 1 -0.1370 -1.4034 -1.5825 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240899000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:31 Heat of formation + Delta-G solvation = -69.673649 kcal Electronic energy + Delta-G solvation = -21191.730123 eV Core-core repulsion = 17676.308355 eV Total energy + Delta-G solvation = -3515.421768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.74900 -41.86857 -38.17753 -36.86340 -36.07718 -33.96424 -31.21913 -30.13729 -29.21732 -28.61295 -26.03668 -25.01854 -22.70912 -22.47907 -21.10618 -20.50136 -17.80464 -17.68775 -17.46054 -16.99525 -16.17088 -15.85091 -14.97757 -14.76647 -14.58390 -14.41321 -14.16098 -13.61330 -13.57515 -13.21386 -12.82954 -12.76653 -12.68671 -12.43972 -12.12318 -11.76707 -11.34065 -11.20740 -11.01801 -10.66077 -10.60923 -10.46596 -10.05495 -9.80473 -9.41199 -8.56657 -7.99829 -7.61796 -7.27809 -7.03507 -4.64362 1.37240 1.57897 2.49210 2.79417 2.93531 2.95412 2.97337 3.01028 3.60645 3.72516 3.96764 4.35359 4.71657 4.77766 4.90677 5.31604 5.36223 5.46605 5.52484 5.56065 5.65472 5.81314 6.09014 6.34805 6.41359 6.54280 6.55527 6.69229 6.77131 6.81636 6.92226 7.06785 7.36582 7.40247 7.54626 7.65990 7.75379 8.00604 8.32202 8.56097 8.63060 9.86227 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.041992 B = 0.003663 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.641537 B = 7641.972424 C = 8040.358889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.441 4.441 8 H 0.087 0.913 9 C 0.135 3.865 10 C -0.234 4.234 11 C -0.039 4.039 12 C -0.242 4.242 13 C 0.028 3.972 14 C -0.110 4.110 15 C -0.093 4.093 16 C -0.002 4.002 17 C 0.031 3.969 18 C -0.105 4.105 19 O -0.314 6.314 20 C 0.214 3.786 21 O -0.315 6.315 22 C 0.137 3.863 23 F -0.161 7.161 24 C -0.210 4.210 25 H 0.288 0.712 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -9.076 -3.612 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.469 4.469 8 H 0.105 0.895 9 C 0.132 3.868 10 C -0.253 4.253 11 C -0.058 4.058 12 C -0.244 4.244 13 C 0.027 3.973 14 C -0.129 4.129 15 C -0.112 4.112 16 C -0.046 4.046 17 C -0.013 4.013 18 C -0.124 4.124 19 O -0.231 6.231 20 C 0.102 3.898 21 O -0.232 6.232 22 C 0.118 3.882 23 F -0.140 7.140 24 C -0.230 4.230 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.047 -9.131 -3.593 10.024 hybrid contribution 0.067 0.533 -0.262 0.597 sum -1.981 -8.598 -3.855 9.629 Atomic orbital electron populations 1.69818 1.07849 1.30181 1.31618 1.26087 0.94840 1.01980 0.91947 0.86182 0.80500 0.79769 0.79682 1.18912 1.19998 1.18257 1.19723 0.98535 0.91109 1.37509 0.89452 1.17454 0.89724 0.92429 0.87177 1.20712 1.04439 0.92574 1.07618 1.20190 0.93105 0.97220 0.95278 1.17803 1.04154 0.88996 1.13449 1.18504 0.92179 0.92448 0.94133 1.21136 0.94274 0.96712 1.00748 1.19924 0.99546 0.90047 1.01649 1.19775 0.92246 0.86597 1.05970 1.19671 0.91272 0.87780 1.02562 1.20217 1.00647 0.88971 1.02578 1.87322 1.32470 1.29521 1.73741 1.25506 0.72042 0.98083 0.94203 1.87313 1.40738 1.27958 1.67165 1.17321 0.84884 0.93999 0.92034 1.91349 1.53628 1.97465 1.71569 1.20938 1.01617 0.96095 1.04352 0.90128 0.88029 0.88150 0.84708 0.85351 0.84991 0.90444 0.85806 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.52 10.96 55.55 0.61 -17.91 16 2 C 0.07 1.67 5.13 -17.33 -0.09 1.59 16 3 Si 0.92 17.09 29.60 -169.99 -5.03 12.06 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 7 C -0.44 -10.68 9.03 -37.90 -0.34 -11.02 16 8 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.14 3.34 5.57 -106.81 -0.60 2.75 16 10 C -0.23 -5.25 9.73 -39.27 -0.38 -5.63 16 11 C -0.04 -0.83 9.43 -39.65 -0.37 -1.20 16 12 C -0.24 -5.22 5.50 -104.56 -0.58 -5.80 16 13 C 0.03 0.53 5.31 -104.88 -0.56 -0.02 16 14 C -0.11 -1.96 8.84 -39.18 -0.35 -2.30 16 15 C -0.09 -1.49 10.04 -39.51 -0.40 -1.88 16 16 C 0.00 -0.04 7.15 -38.87 -0.28 -0.32 16 17 C 0.03 0.53 7.14 -39.12 -0.28 0.25 16 18 C -0.11 -1.89 9.52 -39.07 -0.37 -2.26 16 19 O -0.31 -4.82 11.40 -45.77 -0.52 -5.34 16 20 C 0.21 2.50 8.89 101.05 0.90 3.39 16 21 O -0.31 -4.69 11.41 -45.52 -0.52 -5.21 16 22 C 0.14 3.20 7.10 -39.49 -0.28 2.92 16 23 F -0.16 -3.64 15.85 2.25 0.04 -3.61 16 24 C -0.21 -5.22 8.60 -39.23 -0.34 -5.56 16 25 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 26 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 27 H 0.10 1.85 8.04 -52.49 -0.42 1.43 16 28 H 0.14 2.35 7.77 -52.49 -0.41 1.94 16 29 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.13 2.23 8.04 -52.49 -0.42 1.81 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.13 3.35 6.16 -52.49 -0.32 3.03 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -26.56 296.13 -8.09 -34.64 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -2.81 Total: 6.02 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -4.31 Total: -25.11 kcal Atomic # 7 Polarization: -18.52 SS G_CDS: 0.61 Total: -17.91 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.04 Total: -10.55 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.56 -8.09 -34.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240899000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.031 kcal (2) G-P(sol) polarization free energy of solvation -26.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds