Wall clock time and date at job start Tue Mar 31 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86805 * 119.99896 * 2 1 4 4 H 1.48500 * 109.46986 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46749 * 120.00422 * 3 2 1 6 6 H 1.48491 * 109.47404 * 240.00346 * 3 2 1 7 7 C 1.39998 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99826 * 206.58180 * 7 2 1 9 9 C 1.40956 * 120.00469 * 26.58329 * 7 2 1 10 10 C 1.40934 * 120.13461 * 25.35534 * 9 7 2 11 11 C 1.36201 * 119.90075 * 179.97438 * 10 9 7 12 12 C 1.40012 * 120.18434 * 0.02760 * 11 10 9 13 13 C 1.48022 * 119.86153 * 179.97438 * 12 11 10 14 14 C 1.39708 * 120.06962 * 359.72469 * 13 12 11 15 15 C 1.38050 * 120.15728 * 179.73589 * 14 13 12 16 16 C 1.38105 * 120.30511 * 0.51860 * 15 14 13 17 17 C 1.39725 * 120.13553 * 359.76208 * 16 15 14 18 18 C 1.47750 * 120.08051 * 179.97438 * 17 16 15 19 19 O 1.21465 * 120.00382 * 179.97438 * 18 17 16 20 20 O 1.34717 * 119.99940 * 359.97438 * 18 17 16 21 21 C 1.39308 * 120.07068 * 179.97438 * 13 12 11 22 22 C 1.39767 * 120.27894 * 359.97438 * 12 11 10 23 23 C 1.36589 * 120.09772 * 359.73659 * 22 12 11 24 24 F 1.35092 * 120.09231 * 180.25846 * 23 22 12 25 25 H 0.97003 * 119.99526 * 185.88090 * 1 2 3 26 26 H 1.07998 * 120.05070 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.90659 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.92286 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.84484 * 180.25746 * 15 14 13 30 30 H 1.08006 * 119.93441 * 179.73900 * 16 15 14 31 31 H 0.96695 * 117.00235 * 179.97438 * 20 18 17 32 32 H 1.07999 * 120.14953 * 0.02926 * 21 13 12 33 33 H 1.08002 * 119.95406 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 0.0006 5 1 3.0960 1.6963 1.2125 6 1 3.0958 1.6966 -1.2124 7 6 2.0082 -1.2124 -0.0005 8 1 3.0025 -1.2620 0.4180 9 6 1.4152 -2.3684 -0.5473 10 6 0.4164 -2.2518 -1.5347 11 6 -0.1530 -3.3720 -2.0601 12 6 0.2509 -4.6389 -1.6216 13 6 -0.3731 -5.8515 -2.1972 14 6 -1.3670 -5.7321 -3.1717 15 6 -1.9463 -6.8619 -3.7136 16 6 -1.5560 -8.1169 -3.2895 17 6 -0.5673 -8.2508 -2.3113 18 6 -0.1510 -9.5941 -1.8581 19 8 0.7090 -9.7089 -1.0080 20 8 -0.7253 -10.6916 -2.3877 21 6 0.0258 -7.1142 -1.7645 22 6 1.2408 -4.7634 -0.6428 23 6 1.8236 -3.6478 -0.1123 24 9 2.7840 -3.7684 0.8301 25 1 -0.4849 -0.8357 0.0861 26 1 0.1035 -1.2757 -1.8748 27 1 -0.9181 -3.2828 -2.8171 28 1 -1.6801 -4.7536 -3.5047 29 1 -2.7112 -6.7638 -4.4697 30 1 -2.0162 -8.9967 -3.7145 31 1 -0.4199 -11.5485 -2.0599 32 1 0.7905 -7.2119 -1.0081 33 1 1.5486 -5.7432 -0.3087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241359506.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:53 Heat of formation + Delta-G solvation = -109.893930 kcal Electronic energy + Delta-G solvation = -20848.424165 eV Core-core repulsion = 17331.258315 eV Total energy + Delta-G solvation = -3517.165851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.46087 -40.32695 -38.85646 -37.38850 -36.09730 -34.48922 -31.70066 -31.20525 -29.47566 -28.78460 -25.39914 -24.63984 -22.67849 -21.75652 -20.72139 -20.16160 -18.35822 -17.97598 -17.44520 -16.07257 -15.65349 -15.60690 -15.38253 -14.80470 -14.34658 -14.28462 -14.20239 -13.88177 -13.36260 -13.19117 -12.74761 -12.69856 -12.57027 -11.90863 -11.63852 -11.57014 -11.36729 -11.27318 -11.04944 -10.69780 -10.59640 -10.55834 -10.04929 -9.84417 -9.39997 -8.93563 -8.87706 -7.91587 -7.64485 -7.38903 -4.71872 0.83442 1.35970 2.37796 2.54131 2.76965 3.00677 3.00988 3.10650 3.21491 3.77433 3.95806 4.37143 4.94780 5.05971 5.11953 5.13198 5.37788 5.49800 5.64880 5.74306 5.78978 5.90834 6.09539 6.29763 6.35888 6.47413 6.48925 6.57403 6.68147 6.83006 7.01364 7.06221 7.30398 7.38843 7.49878 7.62546 7.70147 7.87611 7.89896 8.32512 8.45361 9.64171 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.030686 B = 0.003766 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.241358 B = 7432.823942 C = 8234.805031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.036 3.964 3 Si 1.069 2.931 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.479 4.479 8 H 0.088 0.912 9 C 0.075 3.925 10 C -0.211 4.211 11 C -0.057 4.057 12 C -0.203 4.203 13 C 0.014 3.986 14 C -0.108 4.108 15 C -0.122 4.122 16 C -0.102 4.102 17 C -0.121 4.121 18 C 0.527 3.473 19 O -0.516 6.516 20 O -0.515 6.515 21 C -0.080 4.080 22 C -0.082 4.082 23 C -0.031 4.031 24 F -0.160 7.160 25 H 0.304 0.696 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.410 0.590 32 H 0.134 0.866 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 -8.927 -5.968 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.189 4.189 3 Si 0.890 3.110 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.505 4.505 8 H 0.106 0.894 9 C 0.071 3.929 10 C -0.230 4.230 11 C -0.075 4.075 12 C -0.204 4.204 13 C 0.014 3.986 14 C -0.126 4.126 15 C -0.140 4.140 16 C -0.121 4.121 17 C -0.122 4.122 18 C 0.372 3.628 19 O -0.406 6.406 20 O -0.326 6.326 21 C -0.098 4.098 22 C -0.101 4.101 23 C -0.051 4.051 24 F -0.140 7.140 25 H 0.118 0.882 26 H 0.133 0.867 27 H 0.120 0.880 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.268 0.732 32 H 0.152 0.848 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.946 -6.923 -5.887 9.907 hybrid contribution 0.526 -2.430 0.467 2.530 sum -3.420 -9.352 -5.420 11.337 Atomic orbital electron populations 1.70468 1.08251 1.34856 1.25146 1.27313 0.95570 1.04793 0.91214 0.83575 0.75754 0.73096 0.78550 1.19400 1.19638 1.19504 1.20787 1.03707 0.94045 1.31936 0.89413 1.17780 0.92240 0.91286 0.91623 1.20650 1.03596 0.97742 1.01045 1.20464 0.97554 0.91787 0.97700 1.17607 1.05502 0.90946 1.06342 1.18777 0.93792 0.92188 0.93871 1.21495 0.95957 0.98902 0.96230 1.20971 1.00478 0.92074 1.00479 1.21216 0.96469 0.97965 0.96415 1.18858 1.02037 0.89104 1.02174 1.21108 0.78174 0.85270 0.78210 1.90882 1.31001 1.87502 1.31184 1.84574 1.64679 1.17731 1.65631 1.21327 0.99094 0.90307 0.99058 1.20401 0.96527 0.96491 0.96688 1.17305 0.97099 0.94167 0.96559 1.91298 1.62322 1.96781 1.63558 0.88197 0.86682 0.87989 0.85419 0.85732 0.85337 0.73212 0.84807 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.57 12.31 55.55 0.68 -17.88 16 2 C 0.04 0.84 4.90 -17.32 -0.08 0.76 16 3 Si 1.07 19.73 30.01 -169.99 -5.10 14.63 16 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.40 16 6 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.48 -12.03 8.68 -37.89 -0.33 -12.36 16 8 H 0.09 2.20 7.80 -52.49 -0.41 1.79 16 9 C 0.07 1.88 5.30 -106.74 -0.57 1.32 16 10 C -0.21 -4.90 7.92 -39.29 -0.31 -5.22 16 11 C -0.06 -1.18 9.35 -39.65 -0.37 -1.55 16 12 C -0.20 -4.21 5.90 -104.65 -0.62 -4.83 16 13 C 0.01 0.25 5.87 -104.94 -0.62 -0.37 16 14 C -0.11 -1.64 9.42 -39.10 -0.37 -2.01 16 15 C -0.12 -1.57 10.02 -39.70 -0.40 -1.97 16 16 C -0.10 -1.35 9.61 -39.07 -0.38 -1.72 16 17 C -0.12 -1.85 5.87 -105.03 -0.62 -2.47 16 18 C 0.53 7.65 8.27 34.62 0.29 7.94 16 19 O -0.52 -8.98 17.13 -19.24 -0.33 -9.31 16 20 O -0.51 -5.37 12.67 -40.54 -0.51 -5.88 16 21 C -0.08 -1.39 8.97 -38.76 -0.35 -1.73 16 22 C -0.08 -1.82 9.33 -39.61 -0.37 -2.19 16 23 C -0.03 -0.78 7.26 -39.07 -0.28 -1.06 16 24 F -0.16 -3.99 16.70 2.25 0.04 -3.95 16 25 H 0.30 7.55 6.79 -40.82 -0.28 7.27 16 26 H 0.12 2.69 6.52 -52.49 -0.34 2.35 16 27 H 0.10 1.81 6.16 -52.49 -0.32 1.48 16 28 H 0.13 1.77 6.16 -52.49 -0.32 1.44 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.40 7.60 -52.48 -0.40 1.00 16 31 H 0.41 2.31 9.11 45.56 0.42 2.73 16 32 H 0.13 2.43 5.76 -52.49 -0.30 2.12 16 33 H 0.11 2.22 6.17 -52.49 -0.32 1.90 16 LS Contribution 296.93 15.07 4.47 4.47 Total: -1.00 -28.20 296.93 -7.62 -35.82 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -1.50 Total: 9.55 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -5.37 Total: -27.46 kcal Atomic # 7 Polarization: -18.57 SS G_CDS: 0.68 Total: -17.88 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.84 Total: -15.18 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.04 Total: -3.95 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.10 Total: 14.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.20 -7.62 -35.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241359506.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.075 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds