Wall clock time and date at job start Tue Mar 31 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86805 * 119.99896 * 2 1 4 4 H 1.48500 * 109.46986 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46749 * 120.00422 * 3 2 1 6 6 H 1.48491 * 109.47404 * 240.00346 * 3 2 1 7 7 C 1.39998 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99826 * 206.58180 * 7 2 1 9 9 C 1.40956 * 120.00469 * 26.58329 * 7 2 1 10 10 C 1.40934 * 120.13461 * 25.35534 * 9 7 2 11 11 C 1.36201 * 119.90075 * 179.97438 * 10 9 7 12 12 C 1.40012 * 120.18434 * 0.02760 * 11 10 9 13 13 C 1.48022 * 119.86153 * 179.97438 * 12 11 10 14 14 C 1.39708 * 120.06962 * 359.72469 * 13 12 11 15 15 C 1.38050 * 120.15728 * 179.73589 * 14 13 12 16 16 C 1.38105 * 120.30511 * 0.51860 * 15 14 13 17 17 C 1.39725 * 120.13553 * 359.76208 * 16 15 14 18 18 C 1.47750 * 120.08051 * 179.97438 * 17 16 15 19 19 O 1.21465 * 120.00382 * 179.97438 * 18 17 16 20 20 O 1.34717 * 119.99940 * 359.97438 * 18 17 16 21 21 C 1.39308 * 120.07068 * 179.97438 * 13 12 11 22 22 C 1.39767 * 120.27894 * 359.97438 * 12 11 10 23 23 C 1.36589 * 120.09772 * 359.73659 * 22 12 11 24 24 F 1.35092 * 120.09231 * 180.25846 * 23 22 12 25 25 H 0.97003 * 119.99526 * 185.88090 * 1 2 3 26 26 H 1.07998 * 120.05070 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.90659 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.92286 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.84484 * 180.25746 * 15 14 13 30 30 H 1.08006 * 119.93441 * 179.73900 * 16 15 14 31 31 H 0.96695 * 117.00235 * 179.97438 * 20 18 17 32 32 H 1.07999 * 120.14953 * 0.02926 * 21 13 12 33 33 H 1.08002 * 119.95406 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 0.0006 5 1 3.0960 1.6963 1.2125 6 1 3.0958 1.6966 -1.2124 7 6 2.0082 -1.2124 -0.0005 8 1 3.0025 -1.2620 0.4180 9 6 1.4152 -2.3684 -0.5473 10 6 0.4164 -2.2518 -1.5347 11 6 -0.1530 -3.3720 -2.0601 12 6 0.2509 -4.6389 -1.6216 13 6 -0.3731 -5.8515 -2.1972 14 6 -1.3670 -5.7321 -3.1717 15 6 -1.9463 -6.8619 -3.7136 16 6 -1.5560 -8.1169 -3.2895 17 6 -0.5673 -8.2508 -2.3113 18 6 -0.1510 -9.5941 -1.8581 19 8 0.7090 -9.7089 -1.0080 20 8 -0.7253 -10.6916 -2.3877 21 6 0.0258 -7.1142 -1.7645 22 6 1.2408 -4.7634 -0.6428 23 6 1.8236 -3.6478 -0.1123 24 9 2.7840 -3.7684 0.8301 25 1 -0.4849 -0.8357 0.0861 26 1 0.1035 -1.2757 -1.8748 27 1 -0.9181 -3.2828 -2.8171 28 1 -1.6801 -4.7536 -3.5047 29 1 -2.7112 -6.7638 -4.4697 30 1 -2.0162 -8.9967 -3.7145 31 1 -0.4199 -11.5485 -2.0599 32 1 0.7905 -7.2119 -1.0081 33 1 1.5486 -5.7432 -0.3087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241359506.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:52 Heat of formation + Delta-G solvation = -124.889067 kcal Electronic energy + Delta-G solvation = -20849.074403 eV Core-core repulsion = 17331.258315 eV Total energy + Delta-G solvation = -3517.816089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.39393 -41.46730 -40.26113 -38.92896 -37.13437 -36.17071 -33.17551 -32.47652 -31.18090 -30.38324 -27.07310 -25.83908 -24.18675 -23.26105 -22.20332 -21.54432 -20.12134 -19.13438 -18.68636 -17.46666 -17.20152 -17.07960 -16.70847 -16.37356 -16.22402 -15.69692 -15.58261 -15.32913 -14.79136 -14.60805 -14.33452 -14.10839 -14.02077 -13.59476 -13.14326 -12.80426 -12.76990 -12.69639 -12.58148 -12.06830 -11.96501 -11.90514 -11.59800 -11.52610 -11.07174 -10.46159 -10.05438 -9.71789 -9.41303 -9.04837 -6.57637 -0.35996 -0.00694 0.69346 0.92670 1.47926 1.50148 1.66392 1.80127 2.00746 2.25399 2.45627 2.88629 3.34632 3.65992 3.82415 3.89374 3.98777 4.17605 4.22572 4.32291 4.38967 4.46306 4.78009 4.87398 4.92815 4.97069 5.22216 5.23799 5.34187 5.41796 5.51203 5.54022 5.58136 5.66236 5.88364 5.93897 5.95717 6.10256 6.52750 6.64194 6.92680 7.82250 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.030686 B = 0.003766 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.241358 B = 7432.823942 C = 8234.805031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.010 3.990 3 Si 1.118 2.882 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.528 4.528 8 H 0.071 0.929 9 C 0.050 3.950 10 C -0.216 4.216 11 C -0.057 4.057 12 C -0.181 4.181 13 C -0.021 4.021 14 C -0.097 4.097 15 C -0.113 4.113 16 C -0.074 4.074 17 C -0.137 4.137 18 C 0.534 3.466 19 O -0.555 6.555 20 O -0.497 6.497 21 C -0.091 4.091 22 C -0.093 4.093 23 C -0.066 4.066 24 F -0.171 7.171 25 H 0.289 0.711 26 H 0.110 0.890 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.164 0.836 31 H 0.433 0.567 32 H 0.113 0.887 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 -10.844 -8.786 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.209 4.209 3 Si 0.933 3.067 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.554 4.554 8 H 0.090 0.910 9 C 0.047 3.953 10 C -0.236 4.236 11 C -0.075 4.075 12 C -0.182 4.182 13 C -0.021 4.021 14 C -0.115 4.115 15 C -0.130 4.130 16 C -0.092 4.092 17 C -0.138 4.138 18 C 0.381 3.619 19 O -0.448 6.448 20 O -0.310 6.310 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.086 4.086 24 F -0.150 7.150 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.158 0.842 28 H 0.163 0.837 29 H 0.188 0.812 30 H 0.181 0.819 31 H 0.295 0.705 32 H 0.131 0.869 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.360 -8.901 -8.718 13.988 hybrid contribution 1.064 -2.361 1.134 2.828 sum -5.296 -11.262 -7.584 14.574 Atomic orbital electron populations 1.70574 1.08661 1.33703 1.27795 1.28573 0.95602 1.07213 0.89532 0.82998 0.74921 0.69493 0.79264 1.18621 1.18637 1.18412 1.20823 1.03790 0.95562 1.35266 0.91043 1.18092 0.93224 0.91555 0.92446 1.20707 1.03524 0.98478 1.00855 1.20818 0.97853 0.90828 0.98008 1.18035 1.03461 0.92559 1.04174 1.18694 0.96179 0.90908 0.96344 1.21788 0.94265 1.00906 0.94520 1.21454 1.00412 0.90756 1.00390 1.21704 0.93998 0.99609 0.93857 1.19014 1.02836 0.88942 1.03012 1.20972 0.77503 0.85976 0.77496 1.90882 1.32808 1.88090 1.32988 1.84496 1.63676 1.18128 1.64737 1.21252 0.99210 0.91301 0.99147 1.20632 0.96996 0.96231 0.97286 1.17675 0.98191 0.95132 0.97626 1.91247 1.62849 1.96857 1.64083 0.89812 0.87179 0.84174 0.83736 0.81239 0.81880 0.70482 0.86872 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.69 12.31 21.84 0.27 -39.42 16 2 C 0.01 0.50 4.90 85.27 0.42 0.92 16 3 Si 1.12 40.87 30.01 68.60 2.06 42.93 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 6 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 7 C -0.53 -28.34 8.68 23.36 0.20 -28.13 16 8 H 0.07 3.89 7.80 -2.91 -0.02 3.87 16 9 C 0.05 2.69 5.30 -21.23 -0.11 2.58 16 10 C -0.22 -10.36 7.92 22.46 0.18 -10.18 16 11 C -0.06 -2.34 9.35 22.23 0.21 -2.13 16 12 C -0.18 -7.49 5.90 -19.88 -0.12 -7.60 16 13 C -0.02 -0.72 5.87 -20.07 -0.12 -0.84 16 14 C -0.10 -2.51 9.42 22.58 0.21 -2.30 16 15 C -0.11 -2.19 10.02 22.19 0.22 -1.97 16 16 C -0.07 -1.52 9.61 22.60 0.22 -1.30 16 17 C -0.14 -3.79 5.87 -20.13 -0.12 -3.90 16 18 C 0.53 14.15 8.27 70.34 0.58 14.73 16 19 O -0.55 -18.87 17.13 19.95 0.34 -18.53 16 20 O -0.50 -8.27 12.67 -56.27 -0.71 -8.99 16 21 C -0.09 -3.06 8.97 22.80 0.20 -2.85 16 22 C -0.09 -4.28 9.33 22.25 0.21 -4.08 16 23 C -0.07 -3.48 7.26 22.60 0.16 -3.32 16 24 F -0.17 -9.14 16.70 44.97 0.75 -8.38 16 25 H 0.29 15.15 6.79 -92.71 -0.63 14.52 16 26 H 0.11 5.32 6.52 -2.91 -0.02 5.30 16 27 H 0.14 4.57 6.16 -2.91 -0.02 4.55 16 28 H 0.15 3.25 6.16 -2.91 -0.02 3.24 16 29 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.16 2.34 7.60 -2.91 -0.02 2.32 16 31 H 0.43 3.17 9.11 -74.06 -0.67 2.50 16 32 H 0.11 4.22 5.76 -2.91 -0.02 4.20 16 33 H 0.12 5.07 6.17 -2.91 -0.02 5.05 16 Total: -1.00 -66.11 296.93 5.72 -60.40 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.66 Total: 22.38 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 2.35 Total: -50.39 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.27 Total: -39.42 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.37 Total: -27.51 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 0.75 Total: -8.38 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.06 Total: 42.93 kcal Total: -66.11 5.72 -60.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241359506.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.491 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds