Wall clock time and date at job start Tue Mar 31 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35322 * 117.00153 * 2 1 4 4 N 1.29922 * 124.70598 * 359.97438 * 3 2 1 5 5 C 1.31152 * 117.29584 * 180.02562 * 4 3 2 6 6 C 1.36838 * 113.92525 * 359.97438 * 5 4 3 7 7 C 1.46960 * 126.12699 * 180.02562 * 6 5 4 8 8 C 1.40456 * 119.54155 * 359.97438 * 7 6 5 9 9 C 1.35735 * 121.15000 * 179.97438 * 8 7 6 10 10 C 1.41193 * 120.15372 * 0.02562 * 9 8 7 11 11 C 1.40210 * 120.44779 * 179.97438 * 10 9 8 12 12 H 1.07992 * 120.00292 * 154.57868 * 11 10 9 13 13 C 1.40126 * 119.99727 * 334.57801 * 11 10 9 14 14 N 1.30749 * 119.99980 * 334.56255 * 13 11 10 15 15 Si 1.86802 * 119.99969 * 154.56413 * 13 11 10 16 16 H 1.48504 * 109.47171 * 180.02562 * 15 13 11 17 17 H 1.48493 * 109.46925 * 299.99962 * 15 13 11 18 18 H 1.48503 * 109.46907 * 59.99871 * 15 13 11 19 19 C 1.46738 * 119.10541 * 0.24917 * 10 9 8 20 20 C 1.43206 * 120.54680 * 179.72872 * 19 10 9 21 21 N 8.92070 * 153.27867 * 359.76037 * 2 1 3 22 22 C 1.38858 * 118.90862 * 359.46738 * 19 10 9 23 23 S 1.70909 * 124.70929 * 180.31069 * 3 2 1 24 24 H 1.09007 * 109.47175 * 60.00182 * 1 2 3 25 25 H 1.09001 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47459 * 300.00339 * 1 2 3 27 27 H 1.07997 * 123.04161 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.42773 * 0.02562 * 8 7 6 29 29 H 1.07996 * 119.92504 * 179.97438 * 9 8 7 30 30 H 0.96996 * 120.00390 * 354.16875 * 14 13 11 31 31 H 1.08000 * 120.11716 * 180.24939 * 22 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0433 1.2057 0.0000 4 7 1.4275 2.3497 -0.0005 5 6 2.1687 3.4317 -0.0009 6 6 3.5142 3.1827 -0.0003 7 6 4.5822 4.1922 0.0000 8 6 4.2461 5.5559 -0.0010 9 6 5.2060 6.5156 -0.0003 10 6 6.5708 6.1537 0.0010 11 6 7.5674 7.1400 0.0012 12 1 8.5450 6.9197 0.4035 13 6 7.2948 8.4115 -0.5207 14 7 6.3607 8.5613 -1.4233 15 14 8.2659 9.8927 0.0731 16 1 7.7880 11.1114 -0.6282 17 1 8.0733 10.0566 1.5363 18 1 9.7079 9.6876 -0.2165 19 6 6.9321 4.7315 -0.0041 20 6 8.3066 4.3298 -0.0088 21 7 9.3969 4.0112 -0.0168 22 6 5.9193 3.7816 0.0013 23 16 3.7369 1.4349 -0.0076 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.7546 4.4292 -0.0017 28 1 3.2058 5.8460 -0.0015 29 1 4.9252 7.5584 -0.0015 30 1 5.9148 7.7835 -1.7935 31 1 6.1631 2.7295 0.0018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241413850.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:30 Heat of formation + Delta-G solvation = 27.619793 kcal Electronic energy + Delta-G solvation = -18401.010716 eV Core-core repulsion = 15352.480741 eV Total energy + Delta-G solvation = -3048.529975 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.052 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.02393 -39.87617 -38.71344 -37.13414 -36.25382 -32.77856 -31.85328 -29.86591 -28.78564 -27.09386 -25.35149 -24.32994 -22.92409 -21.37361 -20.26435 -19.88202 -18.60872 -17.44690 -17.22550 -16.84987 -16.22952 -15.94546 -15.87284 -15.43658 -14.90931 -14.72564 -14.59693 -14.26373 -14.05336 -13.73895 -13.54438 -13.17662 -12.90055 -12.87478 -12.66838 -12.47452 -12.12393 -11.99158 -11.67414 -11.65791 -11.13388 -10.80159 -10.58886 -9.86588 -9.80894 -9.45418 -8.80828 -6.63722 -0.43297 -0.10070 0.30953 0.76523 0.90026 1.51648 1.58245 1.80582 1.90540 1.92779 2.22705 2.33155 2.53135 2.58036 3.40393 3.44657 3.45976 4.05446 4.18537 4.36883 4.39774 4.42806 4.49763 4.70951 4.80079 4.88946 5.04862 5.18455 5.44371 5.52795 5.58170 5.76646 5.91717 5.96714 6.05489 6.43260 6.54411 6.71916 6.83217 7.75283 Molecular weight = 286.05amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.003939 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.000454 B = 7106.867565 C = 7960.716225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.293 6.293 3 C 0.172 3.828 4 N -0.531 5.531 5 C 0.024 3.976 6 C -0.159 4.159 7 C -0.165 4.165 8 C -0.021 4.021 9 C -0.220 4.220 10 C 0.113 3.887 11 C -0.484 4.484 12 H 0.074 0.926 13 C 0.011 3.989 14 N -0.764 5.764 15 Si 1.109 2.891 16 H -0.261 1.261 17 H -0.256 1.256 18 H -0.267 1.267 19 C -0.201 4.201 20 C 0.301 3.699 21 N -0.519 5.519 22 C 0.004 3.996 23 S 0.195 5.805 24 H 0.057 0.943 25 H 0.132 0.868 26 H 0.057 0.943 27 H 0.192 0.808 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.299 0.701 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 -6.287 1.921 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.200 6.200 3 C -0.140 4.140 4 N -0.262 5.262 5 C -0.125 4.125 6 C -0.280 4.280 7 C -0.170 4.170 8 C -0.042 4.042 9 C -0.239 4.239 10 C 0.107 3.893 11 C -0.510 4.510 12 H 0.092 0.908 13 C -0.212 4.212 14 N -0.383 5.383 15 Si 0.926 3.074 16 H -0.185 1.185 17 H -0.180 1.180 18 H -0.191 1.191 19 C -0.207 4.207 20 C -0.009 4.009 21 N -0.198 5.198 22 C -0.018 4.018 23 S 0.449 5.551 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.076 0.924 27 H 0.209 0.791 28 H 0.150 0.850 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.315 -6.239 1.686 10.531 hybrid contribution -1.078 -0.715 0.031 1.294 sum -9.393 -6.954 1.716 11.813 Atomic orbital electron populations 1.23212 0.75302 1.05244 1.02399 1.86209 1.24504 1.20749 1.88555 1.25243 0.95443 0.88763 1.04588 1.66268 1.39809 0.97582 1.22542 1.21952 0.87711 0.97463 1.05398 1.24575 0.97167 0.94810 1.11439 1.16979 0.89180 0.91141 1.19691 1.20630 0.99208 0.90794 0.93571 1.20741 0.91661 0.98973 1.12524 1.18765 0.93430 0.89624 0.87503 1.20968 1.00004 0.97941 1.32047 0.90751 1.28506 0.96032 1.04259 0.92389 1.70533 1.14681 1.37812 1.15306 0.83067 0.75038 0.71436 0.77908 1.18536 1.18041 1.19127 1.16746 0.83952 0.93576 1.26411 1.25884 0.92853 0.91141 0.90972 1.81023 1.12278 1.10872 1.15664 1.20808 0.91142 0.96915 0.92905 1.83691 0.99458 1.00915 1.71040 0.92446 0.84981 0.92407 0.79099 0.84985 0.86787 0.88733 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.61 113.37 1.20 1.85 16 2 O -0.29 -7.48 10.55 -86.09 -0.91 -8.39 16 3 C 0.17 5.05 8.11 130.53 1.06 6.11 16 4 N -0.53 -16.28 9.81 -316.75 -3.11 -19.39 16 5 C 0.02 0.73 10.90 84.47 0.92 1.65 16 6 C -0.16 -5.11 6.44 24.23 0.16 -4.95 16 7 C -0.17 -5.95 5.88 -20.06 -0.12 -6.07 16 8 C -0.02 -0.76 9.43 22.23 0.21 -0.56 16 9 C -0.22 -9.03 7.87 22.42 0.18 -8.85 16 10 C 0.11 5.11 5.46 -19.85 -0.11 5.00 16 11 C -0.48 -22.56 8.46 23.21 0.20 -22.36 16 12 H 0.07 3.59 7.44 -2.91 -0.02 3.57 16 13 C 0.01 0.50 4.94 85.31 0.42 0.92 16 14 N -0.76 -34.13 12.30 21.86 0.27 -33.86 16 15 Si 1.11 36.96 30.00 68.60 2.06 39.02 16 16 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 17 H -0.26 -8.03 7.11 99.48 0.71 -7.32 16 18 H -0.27 -8.67 7.11 99.48 0.71 -7.96 16 19 C -0.20 -8.77 5.93 -19.66 -0.12 -8.89 16 20 C 0.30 13.73 14.29 88.33 1.26 14.99 16 21 N -0.52 -24.42 18.54 19.00 0.35 -24.06 16 22 C 0.00 0.16 9.31 22.81 0.21 0.38 16 23 S 0.20 5.60 22.15 -56.49 -1.25 4.35 16 24 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.19 4.95 6.96 -2.91 -0.02 4.93 16 28 H 0.13 3.90 6.75 -2.91 -0.02 3.88 16 29 H 0.11 4.75 6.48 -2.91 -0.02 4.73 16 30 H 0.30 13.67 6.68 -92.71 -0.62 13.05 16 31 H 0.12 4.02 7.28 -2.91 -0.02 4.00 16 Total: -1.00 -52.70 298.33 4.23 -48.47 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.34 Total: 14.64 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 5.47 Total: -20.79 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -2.49 Total: -77.31 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.91 Total: -8.39 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.06 Total: 39.02 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.25 Total: 4.35 kcal Total: -52.70 4.23 -48.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241413850.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.094 kcal (2) G-P(sol) polarization free energy of solvation -52.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds