Wall clock time and date at job start Tue Mar 31 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48491 * 109.47419 * 270.00129 * 3 2 1 5 5 H 1.48500 * 109.47177 * 30.00309 * 3 2 1 6 6 H 1.48506 * 109.46698 * 149.99901 * 3 2 1 7 7 C 1.40020 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99732 * 195.53064 * 7 2 1 9 9 C 1.40791 * 120.00225 * 15.53566 * 7 2 1 10 10 C 1.40803 * 120.30666 * 25.35029 * 9 7 2 11 11 C 1.36331 * 120.02418 * 180.02562 * 10 9 7 12 12 C 1.39240 * 120.66025 * 0.02562 * 11 10 9 13 13 F 1.35110 * 119.68727 * 180.02562 * 12 11 10 14 14 C 1.38342 * 120.62349 * 359.72073 * 12 11 10 15 15 C 1.39117 * 119.94957 * 0.53315 * 14 12 11 16 16 C 1.47768 * 120.32378 * 179.74261 * 15 14 12 17 17 C 1.39750 * 120.14832 * 64.72703 * 16 15 14 18 18 C 1.37827 * 119.98155 * 179.97438 * 17 16 15 19 19 C 1.38491 * 120.33000 * 359.97438 * 18 17 16 20 20 C 1.38584 * 120.35973 * 0.02562 * 19 18 17 21 21 C 1.39122 * 119.92029 * 359.97438 * 20 19 18 22 22 O 1.36349 * 108.72725 * 179.97438 * 21 20 19 23 23 C 1.43993 * 105.48579 * 17.26949 * 22 21 20 24 24 O 1.36542 * 131.46541 * 179.97438 * 20 19 18 25 25 H 0.96996 * 120.00149 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.98465 * 0.02781 * 10 9 7 27 27 H 1.07997 * 119.66633 * 180.02562 * 11 10 9 28 28 H 1.08002 * 120.02235 * 180.28017 * 14 12 11 29 29 H 1.08006 * 120.00737 * 359.70234 * 17 16 15 30 30 H 1.07997 * 119.83626 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.81976 * 180.02562 * 19 18 17 32 32 H 1.08993 * 110.57834 * 91.47326 * 23 22 21 33 33 H 1.09003 * 110.56983 * 214.35724 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0083 -1.2126 -0.0005 8 1 3.0587 -1.2298 0.2499 9 6 1.3430 -2.4095 -0.3276 10 6 0.1939 -2.3843 -1.1410 11 6 -0.4461 -3.5466 -1.4537 12 6 0.0242 -4.7670 -0.9758 13 9 -0.6252 -5.9071 -1.2984 14 6 1.1536 -4.8237 -0.1790 15 6 1.8237 -3.6527 0.1604 16 6 3.0276 -3.7032 1.0157 17 6 4.1848 -4.3419 0.5618 18 6 5.3060 -4.3865 1.3622 19 6 5.2933 -3.8002 2.6168 20 6 4.1534 -3.1632 3.0809 21 6 3.0145 -3.1107 2.2835 22 8 2.0388 -2.4379 2.9576 23 6 2.7187 -1.7250 4.0078 24 8 3.8916 -2.5216 4.2574 25 1 -0.4850 0.8400 0.0004 26 1 -0.1805 -1.4436 -1.5173 27 1 -1.3267 -3.5206 -2.0784 28 1 1.5125 -5.7760 0.1827 29 1 4.1991 -4.8042 -0.4142 30 1 6.1991 -4.8803 1.0089 31 1 6.1766 -3.8397 3.2370 32 1 2.9984 -0.7259 3.6737 33 1 2.0949 -1.6710 4.9001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242588198.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:29 Heat of formation + Delta-G solvation = -65.027959 kcal Electronic energy + Delta-G solvation = -22211.417142 eV Core-core repulsion = 18696.196825 eV Total energy + Delta-G solvation = -3515.220316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.49161 -41.56358 -38.06910 -36.70887 -35.62683 -33.75152 -31.54834 -29.62998 -29.31151 -28.21423 -25.31897 -25.16927 -22.78644 -22.28289 -21.09308 -20.17894 -17.57840 -17.45023 -17.11855 -16.79898 -15.96220 -15.54035 -15.39200 -14.64908 -14.25137 -14.15609 -14.01968 -13.69838 -13.21759 -13.10937 -12.61294 -12.50004 -12.34209 -12.07017 -11.90528 -11.74790 -11.37437 -11.21876 -10.91506 -10.79978 -10.48363 -10.38389 -10.06008 -9.57692 -9.31013 -8.25219 -7.65938 -7.47118 -7.38142 -6.94548 -4.50757 1.66397 1.72019 2.54158 2.73264 2.95052 2.98078 3.03644 3.31804 3.76926 3.98931 4.17169 4.39581 4.99247 5.15423 5.26749 5.37842 5.44408 5.66868 5.68377 5.72963 5.89778 6.00270 6.03891 6.24059 6.56857 6.61790 6.79097 6.80535 6.90905 6.97623 7.03474 7.07405 7.32480 7.52160 7.73394 7.75956 7.84736 8.05134 8.38241 8.64872 8.73243 9.96893 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.009511 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.302635 B = 2943.227362 C = 4632.746327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.079 0.921 9 C 0.128 3.872 10 C -0.137 4.137 11 C -0.123 4.123 12 C -0.049 4.049 13 F -0.174 7.174 14 C -0.091 4.091 15 C -0.171 4.171 16 C 0.034 3.966 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.121 4.121 20 C 0.017 3.983 21 C 0.060 3.940 22 O -0.282 6.282 23 C 0.210 3.790 24 O -0.320 6.320 25 H 0.284 0.716 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -0.923 3.289 7.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.097 0.903 9 C 0.125 3.875 10 C -0.156 4.156 11 C -0.142 4.142 12 C -0.069 4.069 13 F -0.153 7.153 14 C -0.110 4.110 15 C -0.173 4.173 16 C 0.033 3.967 17 C -0.130 4.130 18 C -0.138 4.138 19 C -0.140 4.140 20 C -0.027 4.027 21 C 0.015 3.985 22 O -0.196 6.196 23 C 0.098 3.902 24 O -0.237 6.237 25 H 0.095 0.905 26 H 0.148 0.852 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.095 0.905 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.071 -0.763 3.490 7.044 hybrid contribution 0.036 0.858 0.199 0.882 sum 6.107 0.095 3.689 7.136 Atomic orbital electron populations 1.69790 1.07581 1.29653 1.33411 1.25958 0.94754 1.01417 0.92172 0.86340 0.80567 0.80429 0.79770 1.18875 1.20008 1.18475 1.19461 0.97313 0.90645 1.38641 0.90305 1.17518 0.90716 0.91045 0.88186 1.20982 0.98076 0.96624 0.99953 1.20497 1.00159 0.91986 1.01567 1.17133 0.98051 0.81310 1.10394 1.91288 1.81563 1.49887 1.92588 1.20470 0.94947 0.97129 0.98485 1.18133 0.99381 0.93280 1.06514 1.17758 0.94438 0.96057 0.88454 1.21115 0.91463 1.00278 1.00101 1.20678 0.98656 1.00988 0.93433 1.19878 0.95029 1.02234 0.96819 1.19778 0.95962 1.01621 0.85332 1.19916 0.86123 0.98935 0.93541 1.87493 1.29069 1.60836 1.42237 1.25532 0.80834 0.92772 0.91080 1.87271 1.46304 1.59684 1.30413 0.90460 0.85235 0.88148 0.87927 0.85050 0.85308 0.85828 0.90464 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.80 10.87 55.55 0.60 -18.20 16 2 C 0.08 1.79 5.18 -17.31 -0.09 1.70 16 3 Si 0.90 17.61 29.59 -169.99 -5.03 12.58 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.43 -10.67 7.91 -37.95 -0.30 -10.97 16 8 H 0.08 1.94 7.08 -52.49 -0.37 1.57 16 9 C 0.13 3.22 5.59 -106.54 -0.60 2.63 16 10 C -0.14 -3.39 8.62 -39.30 -0.34 -3.73 16 11 C -0.12 -2.87 9.94 -39.90 -0.40 -3.27 16 12 C -0.05 -1.15 7.30 -39.17 -0.29 -1.44 16 13 F -0.17 -3.93 17.26 2.25 0.04 -3.89 16 14 C -0.09 -2.08 9.70 -39.22 -0.38 -2.46 16 15 C -0.17 -4.03 5.37 -104.26 -0.56 -4.59 16 16 C 0.03 0.71 4.39 -104.80 -0.46 0.25 16 17 C -0.11 -1.95 9.74 -39.17 -0.38 -2.33 16 18 C -0.12 -1.78 10.02 -39.64 -0.40 -2.18 16 19 C -0.12 -1.91 10.05 -39.36 -0.40 -2.31 16 20 C 0.02 0.32 7.15 -39.13 -0.28 0.04 16 21 C 0.06 1.26 5.99 -38.61 -0.23 1.03 16 22 O -0.28 -6.09 11.32 -45.20 -0.51 -6.60 16 23 C 0.21 3.51 8.89 101.05 0.90 4.40 16 24 O -0.32 -5.67 11.40 -45.83 -0.52 -6.20 16 25 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 26 H 0.13 3.23 6.13 -52.48 -0.32 2.91 16 27 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 29 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -27.70 295.68 -7.95 -35.65 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -2.79 Total: 5.42 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -4.19 Total: -23.22 kcal Atomic # 7 Polarization: -18.80 SS G_CDS: 0.60 Total: -18.20 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.03 Total: -12.79 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.70 -7.95 -35.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242588198.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.377 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds