Wall clock time and date at job start Tue Mar 31 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48491 * 109.47419 * 270.00129 * 3 2 1 5 5 H 1.48500 * 109.47177 * 30.00309 * 3 2 1 6 6 H 1.48506 * 109.46698 * 149.99901 * 3 2 1 7 7 C 1.40020 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99732 * 195.53064 * 7 2 1 9 9 C 1.40791 * 120.00225 * 15.53566 * 7 2 1 10 10 C 1.40803 * 120.30666 * 25.35029 * 9 7 2 11 11 C 1.36331 * 120.02418 * 180.02562 * 10 9 7 12 12 C 1.39240 * 120.66025 * 0.02562 * 11 10 9 13 13 F 1.35110 * 119.68727 * 180.02562 * 12 11 10 14 14 C 1.38342 * 120.62349 * 359.72073 * 12 11 10 15 15 C 1.39117 * 119.94957 * 0.53315 * 14 12 11 16 16 C 1.47768 * 120.32378 * 179.74261 * 15 14 12 17 17 C 1.39750 * 120.14832 * 64.72703 * 16 15 14 18 18 C 1.37827 * 119.98155 * 179.97438 * 17 16 15 19 19 C 1.38491 * 120.33000 * 359.97438 * 18 17 16 20 20 C 1.38584 * 120.35973 * 0.02562 * 19 18 17 21 21 C 1.39122 * 119.92029 * 359.97438 * 20 19 18 22 22 O 1.36349 * 108.72725 * 179.97438 * 21 20 19 23 23 C 1.43993 * 105.48579 * 17.26949 * 22 21 20 24 24 O 1.36542 * 131.46541 * 179.97438 * 20 19 18 25 25 H 0.96996 * 120.00149 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.98465 * 0.02781 * 10 9 7 27 27 H 1.07997 * 119.66633 * 180.02562 * 11 10 9 28 28 H 1.08002 * 120.02235 * 180.28017 * 14 12 11 29 29 H 1.08006 * 120.00737 * 359.70234 * 17 16 15 30 30 H 1.07997 * 119.83626 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.81976 * 180.02562 * 19 18 17 32 32 H 1.08993 * 110.57834 * 91.47326 * 23 22 21 33 33 H 1.09003 * 110.56983 * 214.35724 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0083 -1.2126 -0.0005 8 1 3.0587 -1.2298 0.2499 9 6 1.3430 -2.4095 -0.3276 10 6 0.1939 -2.3843 -1.1410 11 6 -0.4461 -3.5466 -1.4537 12 6 0.0242 -4.7670 -0.9758 13 9 -0.6252 -5.9071 -1.2984 14 6 1.1536 -4.8237 -0.1790 15 6 1.8237 -3.6527 0.1604 16 6 3.0276 -3.7032 1.0157 17 6 4.1848 -4.3419 0.5618 18 6 5.3060 -4.3865 1.3622 19 6 5.2933 -3.8002 2.6168 20 6 4.1534 -3.1632 3.0809 21 6 3.0145 -3.1107 2.2835 22 8 2.0388 -2.4379 2.9576 23 6 2.7187 -1.7250 4.0078 24 8 3.8916 -2.5216 4.2574 25 1 -0.4850 0.8400 0.0004 26 1 -0.1805 -1.4436 -1.5173 27 1 -1.3267 -3.5206 -2.0784 28 1 1.5125 -5.7760 0.1827 29 1 4.1991 -4.8042 -0.4142 30 1 6.1991 -4.8803 1.0089 31 1 6.1766 -3.8397 3.2370 32 1 2.9984 -0.7259 3.6737 33 1 2.0949 -1.6710 4.9001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242588198.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:28 Heat of formation + Delta-G solvation = -78.736013 kcal Electronic energy + Delta-G solvation = -22212.011567 eV Core-core repulsion = 18696.196825 eV Total energy + Delta-G solvation = -3515.814742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.31976 -42.94610 -39.72088 -38.19493 -37.06271 -35.54613 -33.13864 -31.38074 -30.72907 -29.81504 -26.98239 -26.63776 -24.35246 -23.68280 -22.87650 -21.81804 -19.35483 -18.82818 -18.64164 -18.26591 -17.46276 -17.18606 -16.89980 -16.43528 -16.07839 -15.85633 -15.34249 -15.14358 -14.73845 -14.55251 -14.27169 -14.12800 -13.81937 -13.75016 -13.45971 -13.16672 -12.97844 -12.83807 -12.57292 -12.22566 -12.22099 -11.83740 -11.66901 -11.30506 -11.07947 -9.80869 -9.35369 -9.17798 -8.90114 -8.70149 -6.35858 0.24003 0.35096 0.77397 0.94959 1.34785 1.44473 1.46558 1.98558 2.14430 2.58372 2.69936 2.80463 3.49512 3.65008 3.90005 3.95558 4.06534 4.21770 4.25965 4.29611 4.37042 4.47561 4.56539 4.67266 4.98843 5.09333 5.18029 5.24771 5.27707 5.44067 5.53749 5.56991 5.66833 5.78683 5.88369 6.00094 6.22716 6.33557 6.54097 6.82006 6.89740 8.23489 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.009511 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.302635 B = 2943.227362 C = 4632.746327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.041 3.959 3 Si 0.971 3.029 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.448 4.448 8 H 0.071 0.929 9 C 0.102 3.898 10 C -0.159 4.159 11 C -0.127 4.127 12 C -0.062 4.062 13 F -0.170 7.170 14 C -0.097 4.097 15 C -0.170 4.170 16 C -0.002 4.002 17 C -0.115 4.115 18 C -0.100 4.100 19 C -0.111 4.111 20 C 0.004 3.996 21 C 0.029 3.971 22 O -0.320 6.320 23 C 0.204 3.796 24 O -0.321 6.321 25 H 0.292 0.708 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.144 0.856 30 H 0.177 0.823 31 H 0.160 0.840 32 H 0.083 0.917 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.809 -0.969 3.952 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.089 0.911 9 C 0.099 3.901 10 C -0.178 4.178 11 C -0.146 4.146 12 C -0.082 4.082 13 F -0.149 7.149 14 C -0.116 4.116 15 C -0.172 4.172 16 C -0.003 4.003 17 C -0.133 4.133 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.040 4.040 21 C -0.015 4.015 22 O -0.236 6.236 23 C 0.093 3.907 24 O -0.238 6.238 25 H 0.103 0.897 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.162 0.838 30 H 0.195 0.805 31 H 0.178 0.822 32 H 0.101 0.899 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.424 -0.823 4.153 9.428 hybrid contribution -0.645 0.794 0.044 1.024 sum 7.779 -0.030 4.198 8.840 Atomic orbital electron populations 1.69832 1.08870 1.30931 1.33739 1.26708 0.95407 1.04222 0.91288 0.85360 0.79167 0.76369 0.79984 1.18220 1.18945 1.18435 1.19507 0.97014 0.91434 1.39635 0.91052 1.17876 0.91272 0.92234 0.88722 1.20959 0.99005 0.96690 1.01142 1.20658 1.00585 0.91726 1.01632 1.17279 0.98533 0.81457 1.10944 1.91287 1.81514 1.49539 1.92603 1.20712 0.94703 0.97920 0.98248 1.18476 1.00139 0.92786 1.05802 1.17942 0.94929 0.98652 0.88776 1.21369 0.91199 0.99630 1.01081 1.21187 0.99066 0.99194 0.92289 1.20442 0.95067 1.00080 0.97310 1.20136 0.96215 1.02336 0.85321 1.20160 0.87099 1.00012 0.94273 1.87418 1.30857 1.61729 1.43616 1.25886 0.80997 0.92377 0.91417 1.87241 1.46560 1.59783 1.30173 0.89692 0.86207 0.86457 0.86094 0.83780 0.80531 0.82227 0.89916 0.82709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.91 10.87 21.84 0.24 -39.67 16 2 C 0.04 1.94 5.18 85.27 0.44 2.38 16 3 Si 0.97 36.04 29.59 68.60 2.03 38.07 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.45 -22.70 7.91 23.33 0.18 -22.52 16 8 H 0.07 3.62 7.08 -2.91 -0.02 3.60 16 9 C 0.10 5.29 5.59 -21.11 -0.12 5.17 16 10 C -0.16 -8.14 8.62 22.45 0.19 -7.95 16 11 C -0.13 -6.08 9.94 22.07 0.22 -5.86 16 12 C -0.06 -2.96 7.30 22.54 0.16 -2.80 16 13 F -0.17 -7.66 17.26 44.97 0.78 -6.89 16 14 C -0.10 -4.47 9.70 22.51 0.22 -4.25 16 15 C -0.17 -8.18 5.37 -19.63 -0.11 -8.29 16 16 C 0.00 -0.09 4.39 -19.98 -0.09 -0.18 16 17 C -0.11 -3.80 9.74 22.54 0.22 -3.58 16 18 C -0.10 -2.57 10.02 22.23 0.22 -2.35 16 19 C -0.11 -3.09 10.05 22.41 0.23 -2.87 16 20 C 0.00 0.14 7.15 22.57 0.16 0.30 16 21 C 0.03 1.23 5.99 22.90 0.14 1.37 16 22 O -0.32 -14.14 11.32 -74.29 -0.84 -14.98 16 23 C 0.20 6.73 8.89 113.37 1.01 7.74 16 24 O -0.32 -10.93 11.40 -76.55 -0.87 -11.81 16 25 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 26 H 0.12 6.26 6.13 -2.91 -0.02 6.24 16 27 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 28 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 29 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 30 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.16 3.86 8.14 -2.39 -0.02 3.84 16 Total: -1.00 -61.74 295.68 5.57 -56.17 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.16 Total: 22.79 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 3.09 Total: -43.69 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.24 Total: -39.67 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.71 Total: -26.79 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 0.78 Total: -6.89 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Total: -61.74 5.57 -56.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242588198.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.566 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds