Wall clock time and date at job start Tue Mar 31 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21432 * 119.99589 * 2 1 4 4 C 1.41366 * 120.00073 * 179.72929 * 2 1 3 5 5 C 1.36611 * 125.16494 * 180.02562 * 4 2 1 6 6 C 1.38494 * 113.36286 * 179.97438 * 5 4 2 7 7 C 1.47918 * 122.85214 * 180.02562 * 6 5 4 8 8 C 1.40016 * 119.88756 * 309.99722 * 7 6 5 9 9 C 1.36183 * 120.11845 * 179.97438 * 8 7 6 10 10 C 1.40975 * 119.88225 * 359.97438 * 9 8 7 11 11 C 1.40997 * 120.11419 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99977 * 24.71198 * 11 10 9 13 13 C 1.39930 * 119.99888 * 204.70514 * 11 10 9 14 14 N 1.30855 * 120.00072 * 18.00156 * 13 11 10 15 15 Si 1.86798 * 119.99843 * 198.00352 * 13 11 10 16 16 H 1.48498 * 109.47502 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47428 * 120.00122 * 15 13 11 18 18 H 1.48502 * 109.47074 * 240.00169 * 15 13 11 19 19 C 1.40937 * 119.77179 * 0.02562 * 10 9 8 20 20 C 1.36227 * 119.88095 * 359.73653 * 19 10 9 21 21 C 1.50700 * 119.94139 * 180.25695 * 20 19 10 22 22 C 1.36644 * 114.29261 * 359.97438 * 6 5 4 23 23 S 1.70561 * 110.78125 * 359.72582 * 22 6 5 24 24 H 1.08998 * 109.47189 * 89.99840 * 1 2 3 25 25 H 1.08999 * 109.46922 * 209.99704 * 1 2 3 26 26 H 1.08997 * 109.47106 * 330.00037 * 1 2 3 27 27 H 1.07999 * 123.31818 * 359.96834 * 5 4 2 28 28 H 1.08005 * 119.93779 * 359.96027 * 8 7 6 29 29 H 1.08003 * 120.06087 * 179.97438 * 9 8 7 30 30 H 0.96994 * 119.99376 * 179.97438 * 14 13 11 31 31 H 1.07996 * 120.06206 * 180.02562 * 19 10 9 32 32 H 1.09003 * 109.46927 * 270.26068 * 21 20 19 33 33 H 1.08998 * 109.47320 * 30.25821 * 21 20 19 34 34 H 1.09004 * 109.47437 * 150.26425 * 21 20 19 35 35 H 1.07993 * 124.60467 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1141 1.0517 0.0000 4 6 2.2139 -1.2242 0.0058 5 6 3.5745 -1.3472 0.0069 6 6 4.0070 -2.6629 0.0135 7 6 5.4381 -3.0370 0.0164 8 6 6.3112 -2.4631 -0.9156 9 6 7.6297 -2.8038 -0.9169 10 6 8.1152 -3.7358 0.0229 11 6 9.4793 -4.0925 0.0257 12 1 10.2159 -3.4132 -0.3773 13 6 9.8787 -5.3265 0.5508 14 7 9.0014 -6.2840 0.7115 15 14 11.6643 -5.6069 1.0224 16 1 12.4488 -4.3772 0.7442 17 1 11.7491 -5.9322 2.4688 18 1 12.2147 -6.7347 0.2284 19 6 7.2321 -4.3105 0.9590 20 6 5.9159 -3.9592 0.9548 21 6 4.9716 -4.5686 1.9588 22 6 2.9994 -3.5858 0.0183 23 16 1.4761 -2.8187 0.0221 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 4.2465 -0.5018 0.0028 28 1 5.9382 -1.7491 -1.6351 29 1 8.3023 -2.3609 -1.6365 30 1 9.2784 -7.1394 1.0752 31 1 7.5991 -5.0246 1.6813 32 1 4.5452 -5.4836 1.5477 33 1 5.5152 -4.8006 2.8747 34 1 4.1713 -3.8623 2.1802 35 1 3.1476 -4.6555 0.0233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244628407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:51 Heat of formation + Delta-G solvation = -16.546786 kcal Electronic energy + Delta-G solvation = -19014.756249 eV Core-core repulsion = 16067.851410 eV Total energy + Delta-G solvation = -2946.904839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76109 -39.97408 -37.96361 -35.57919 -33.54950 -32.41574 -31.33365 -29.70216 -27.66376 -27.43108 -25.27056 -23.34747 -21.81101 -20.83566 -20.09546 -19.05387 -18.32150 -17.07606 -16.99786 -16.17673 -15.96438 -15.85807 -15.56176 -15.44823 -14.58516 -14.39006 -13.91356 -13.82825 -13.68803 -13.54476 -13.36951 -13.18933 -13.05202 -12.94948 -12.78843 -12.68960 -12.40475 -12.06338 -11.92887 -11.44151 -11.30110 -11.05863 -10.94299 -9.82843 -9.62233 -9.27696 -8.85885 -8.66107 -6.34446 -0.70082 0.61480 0.67117 0.94572 1.15044 1.26661 1.37327 1.51506 1.54257 2.00899 2.18497 2.69946 3.26701 3.68428 4.09755 4.21136 4.29791 4.35303 4.39912 4.48654 4.53157 4.62953 4.66053 4.85634 4.89121 4.97928 5.09136 5.12311 5.17794 5.23653 5.30338 5.47434 5.51201 5.72419 6.00912 6.09252 6.23272 6.35132 6.51805 6.65446 6.88905 7.00955 8.26901 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.036231 B = 0.003691 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.638862 B = 7584.785210 C = 8072.192646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.420 3.580 3 O -0.511 6.511 4 C -0.337 4.337 5 C -0.051 4.051 6 C -0.057 4.057 7 C -0.177 4.177 8 C -0.073 4.073 9 C -0.250 4.250 10 C 0.086 3.914 11 C -0.494 4.494 12 H 0.074 0.926 13 C 0.037 3.963 14 N -0.814 5.814 15 Si 0.982 3.018 16 H -0.260 1.260 17 H -0.262 1.262 18 H -0.264 1.264 19 C -0.190 4.190 20 C -0.058 4.058 21 C -0.096 4.096 22 C -0.236 4.236 23 S 0.313 5.687 24 H 0.120 0.880 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.290 0.710 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.021 1.810 1.027 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.302 3.698 3 O -0.393 6.393 4 C -0.454 4.454 5 C -0.086 4.086 6 C -0.069 4.069 7 C -0.180 4.180 8 C -0.091 4.091 9 C -0.270 4.270 10 C 0.084 3.916 11 C -0.523 4.523 12 H 0.092 0.908 13 C -0.179 4.179 14 N -0.440 5.440 15 Si 0.803 3.197 16 H -0.184 1.184 17 H -0.187 1.187 18 H -0.188 1.188 19 C -0.209 4.209 20 C -0.058 4.058 21 C -0.153 4.153 22 C -0.374 4.374 23 S 0.583 5.417 24 H 0.138 0.862 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -17.308 1.530 1.109 17.410 hybrid contribution 3.064 0.197 -0.064 3.071 sum -14.243 1.726 1.045 14.385 Atomic orbital electron populations 1.22282 0.89925 1.06167 1.06586 1.20862 0.93439 0.85571 0.69889 1.90586 1.73409 1.35106 1.40161 1.24201 0.98009 1.01553 1.21678 1.20968 0.94516 0.97054 0.96051 1.17863 0.93388 0.91655 1.04009 1.17884 0.91156 1.06029 1.02915 1.20539 0.93119 0.98046 0.97435 1.20812 0.95613 1.07646 1.02899 1.18027 0.93935 0.90221 0.89417 1.19844 0.93507 1.02310 1.36612 0.90756 1.26767 1.04459 0.94490 0.92190 1.69884 1.38332 1.03704 1.32030 0.85160 0.76404 0.79194 0.78984 1.18392 1.18661 1.18838 1.20831 0.93262 1.05095 1.01737 1.19645 0.94355 0.95655 0.96176 1.20726 0.97796 1.00138 0.96634 1.26268 0.98268 1.05153 1.07663 1.81976 1.03160 0.91281 1.65279 0.86217 0.87933 0.88267 0.85502 0.87650 0.88755 0.89892 0.87784 0.91021 0.92731 0.91271 0.80736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 9.95 71.24 0.71 -1.97 16 2 C 0.42 10.68 7.05 26.46 0.19 10.86 16 3 O -0.51 -17.41 17.44 -3.50 -0.06 -17.47 16 4 C -0.34 -9.05 6.20 22.66 0.14 -8.91 16 5 C -0.05 -1.74 9.56 21.95 0.21 -1.53 16 6 C -0.06 -2.03 4.59 -21.03 -0.10 -2.13 16 7 C -0.18 -7.74 5.61 -19.86 -0.11 -7.86 16 8 C -0.07 -3.37 9.53 22.22 0.21 -3.16 16 9 C -0.25 -12.79 9.73 22.46 0.22 -12.57 16 10 C 0.09 4.76 5.57 -21.27 -0.12 4.64 16 11 C -0.49 -26.92 9.03 23.36 0.21 -26.71 16 12 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 13 C 0.04 1.86 5.13 85.25 0.44 2.29 16 14 N -0.81 -41.86 10.96 21.83 0.24 -41.62 16 15 Si 0.98 37.90 29.60 68.60 2.03 39.93 16 16 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 18 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 19 C -0.19 -9.96 8.26 22.46 0.19 -9.78 16 20 C -0.06 -2.63 5.85 -19.91 -0.12 -2.75 16 21 C -0.10 -3.45 8.57 71.24 0.61 -2.84 16 22 C -0.24 -6.54 8.93 67.45 0.60 -5.94 16 23 S 0.31 6.07 21.79 -56.49 -1.23 4.84 16 24 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.10 0.98 7.22 -2.39 -0.02 0.96 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.13 4.71 8.00 -2.91 -0.02 4.69 16 28 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.09 4.61 8.06 -2.91 -0.02 4.58 16 30 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 31 H 0.10 5.67 6.16 -2.91 -0.02 5.65 16 32 H 0.07 2.31 7.72 -2.39 -0.02 2.29 16 33 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 34 H 0.07 2.22 6.45 -2.38 -0.02 2.21 16 35 H 0.18 4.55 7.29 -2.91 -0.02 4.53 16 Total: -1.00 -65.14 314.21 5.37 -59.78 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 1.11 Total: 22.89 kcal Atomic # 6 Polarization: -71.63 SS G_CDS: 3.28 Total: -68.35 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.24 Total: -41.62 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.06 Total: -17.47 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.23 Total: 4.84 kcal Total: -65.14 5.37 -59.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244628407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.229 kcal (2) G-P(sol) polarization free energy of solvation -65.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds