Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99440 * 2 1 4 4 H 1.48503 * 109.46681 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47429 * 300.00290 * 3 2 1 6 6 H 1.48493 * 109.47075 * 60.00496 * 3 2 1 7 7 C 1.37870 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00633 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47365 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00150 * 180.02562 * 11 10 9 13 13 S 1.71202 * 119.99680 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00233 * 180.02562 * 12 11 10 15 15 C 1.40161 * 119.99923 * 184.95022 * 14 12 11 16 16 C 1.38982 * 120.08673 * 88.14034 * 15 14 12 17 17 F 1.35105 * 120.04275 * 359.70696 * 16 15 14 18 18 C 1.38342 * 119.91506 * 179.97438 * 16 15 14 19 19 C 1.38265 * 120.08321 * 0.02799 * 18 16 15 20 20 C 1.38268 * 120.17420 * 359.95432 * 19 18 16 21 21 C 1.38342 * 120.08529 * 0.03668 * 20 19 18 22 22 F 1.35101 * 120.04120 * 180.02562 * 21 20 19 23 23 H 0.96999 * 120.00530 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46745 * 59.99834 * 9 7 2 25 25 H 1.09000 * 109.46741 * 300.00494 * 9 7 2 26 26 H 1.09001 * 109.46771 * 60.00431 * 10 9 7 27 27 H 1.08994 * 109.47270 * 299.99906 * 10 9 7 28 28 H 0.97003 * 119.99756 * 0.02562 * 11 10 9 29 29 H 0.96996 * 119.99665 * 4.94837 * 14 12 11 30 30 H 1.08001 * 119.95699 * 179.97438 * 18 16 15 31 31 H 1.08001 * 119.91501 * 179.97438 * 19 18 16 32 32 H 1.08000 * 119.95564 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5131 -4.9307 -0.0012 12 6 2.1870 -6.0979 -0.0016 13 16 3.8990 -6.0978 -0.0022 14 7 1.5132 -7.2652 -0.0016 15 6 2.2103 -8.4767 0.1027 16 6 2.5011 -9.0077 1.3538 17 9 2.1174 -8.3537 2.4720 18 6 3.1888 -10.2040 1.4526 19 6 3.5872 -10.8709 0.3088 20 6 3.2994 -10.3461 -0.9376 21 6 2.6120 -9.1503 -1.0447 22 9 2.3308 -8.6386 -2.2630 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6249 -2.5571 0.8897 26 1 2.8728 -3.6046 0.8878 27 1 2.8715 -3.6038 -0.8922 28 1 0.5431 -4.9308 -0.0005 29 1 0.5460 -7.2667 -0.0737 30 1 3.4155 -10.6171 2.4244 31 1 4.1243 -11.8045 0.3891 32 1 3.6120 -10.8702 -1.8287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247104172.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = -49.639805 kcal Electronic energy + Delta-G solvation = -19419.316846 eV Core-core repulsion = 15949.040208 eV Total energy + Delta-G solvation = -3470.276638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.19565 -49.17254 -39.78020 -38.21331 -35.61030 -33.16170 -30.67301 -30.62814 -29.08922 -25.23863 -23.61827 -23.19187 -22.97633 -21.34855 -18.85436 -18.42616 -17.84478 -17.56983 -16.53463 -16.00438 -15.86398 -15.65996 -15.46133 -15.08685 -14.75534 -14.61691 -14.54618 -14.16988 -13.24420 -12.90583 -12.38116 -12.24532 -12.10909 -12.06635 -11.36399 -11.06909 -10.89614 -10.66340 -10.46483 -9.76839 -9.40901 -9.31829 -9.06210 -9.02774 -8.49646 -7.60108 -7.14094 -6.16387 -4.19573 0.55259 0.70124 1.56336 2.14687 2.64984 3.03595 3.26459 3.34225 3.40041 3.52752 3.72546 4.12332 4.38092 4.38798 4.51697 4.79377 5.07271 5.21514 5.48052 5.55105 5.66874 5.82847 5.86539 5.98656 6.20081 6.45523 6.50738 6.62696 6.97004 7.39247 7.44368 7.47628 7.82049 8.17881 8.86372 9.46206 10.95352 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.003430 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.042474 B = 8162.428376 C = 8328.847777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.011 3.989 10 C 0.122 3.878 11 N -0.658 5.658 12 C 0.561 3.439 13 S -0.635 6.635 14 N -0.655 5.655 15 C 0.083 3.917 16 C 0.150 3.850 17 F -0.122 7.122 18 C -0.161 4.161 19 C -0.052 4.052 20 C -0.161 4.161 21 C 0.154 3.846 22 F -0.121 7.121 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.397 0.603 29 H 0.405 0.595 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 -23.829 0.535 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.082 0.918 9 C -0.026 4.026 10 C 0.000 4.000 11 N -0.281 5.281 12 C 0.202 3.798 13 S -0.510 6.510 14 N -0.288 5.288 15 C -0.013 4.013 16 C 0.129 3.871 17 F -0.100 7.100 18 C -0.181 4.181 19 C -0.070 4.070 20 C -0.181 4.181 21 C 0.132 3.868 22 F -0.099 7.099 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.233 0.767 29 H 0.245 0.755 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.892 -23.487 0.540 23.570 hybrid contribution -1.579 1.270 -0.067 2.027 sum 0.313 -22.218 0.473 22.225 Atomic orbital electron populations 1.69958 1.06164 1.26955 1.50292 1.24996 0.94910 0.99565 0.94783 0.86409 0.80285 0.83022 0.77633 1.19361 1.20896 1.20890 1.21019 0.93481 0.89857 1.51512 0.91755 1.19400 0.94179 0.91130 0.97924 1.22349 0.96077 0.78031 1.03496 1.45745 1.10276 1.05405 1.66700 1.22433 0.95927 0.81107 0.80309 1.93339 0.89282 1.94852 1.73522 1.41839 1.09298 1.01886 1.75737 1.16995 1.04678 0.87973 0.91634 1.17582 0.96797 0.91588 0.81151 1.91557 1.88615 1.80495 1.49347 1.21119 1.01262 0.94596 1.01092 1.20901 0.96320 0.99398 0.90393 1.21125 1.01623 0.95368 0.99979 1.17564 0.96947 0.92884 0.79395 1.91554 1.91149 1.86722 1.40523 0.92812 0.95916 0.95895 0.90126 0.90144 0.76653 0.75537 0.83523 0.83557 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.73 7.74 -52.49 -0.41 1.33 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.50 5.07 -4.04 -0.02 2.48 16 11 N -0.66 -10.98 5.56 -62.04 -0.34 -11.33 16 12 C 0.56 9.47 7.95 -86.92 -0.69 8.78 16 13 S -0.64 -13.23 27.97 -107.50 -3.01 -16.24 16 14 N -0.65 -8.57 4.93 -11.29 -0.06 -8.63 16 15 C 0.08 1.04 4.61 -83.49 -0.38 0.65 16 16 C 0.15 1.76 7.31 -39.27 -0.29 1.47 16 17 F -0.12 -1.63 17.08 2.25 0.04 -1.59 16 18 C -0.16 -1.36 10.02 -39.53 -0.40 -1.75 16 19 C -0.05 -0.35 10.04 -39.56 -0.40 -0.75 16 20 C -0.16 -1.35 10.02 -39.53 -0.40 -1.75 16 21 C 0.15 1.79 7.31 -39.27 -0.29 1.51 16 22 F -0.12 -1.61 17.08 2.25 0.04 -1.57 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.76 7.99 -51.93 -0.41 1.34 16 27 H 0.08 1.75 7.99 -51.93 -0.42 1.34 16 28 H 0.40 5.54 8.49 -40.82 -0.35 5.19 16 29 H 0.41 3.97 8.84 -40.82 -0.36 3.60 16 30 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -33.58 308.56 -9.57 -43.15 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -3.19 Total: 2.52 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -3.41 Total: -2.16 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.34 Total: -45.01 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -13.23 SS G_CDS: -3.01 Total: -16.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.58 -9.57 -43.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247104172.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.487 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds