Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99440 * 2 1 4 4 H 1.48503 * 109.46681 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47429 * 300.00290 * 3 2 1 6 6 H 1.48493 * 109.47075 * 60.00496 * 3 2 1 7 7 C 1.37870 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00633 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47365 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00150 * 180.02562 * 11 10 9 13 13 S 1.71202 * 119.99680 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00233 * 180.02562 * 12 11 10 15 15 C 1.40161 * 119.99923 * 184.95022 * 14 12 11 16 16 C 1.38982 * 120.08673 * 88.14034 * 15 14 12 17 17 F 1.35105 * 120.04275 * 359.70696 * 16 15 14 18 18 C 1.38342 * 119.91506 * 179.97438 * 16 15 14 19 19 C 1.38265 * 120.08321 * 0.02799 * 18 16 15 20 20 C 1.38268 * 120.17420 * 359.95432 * 19 18 16 21 21 C 1.38342 * 120.08529 * 0.03668 * 20 19 18 22 22 F 1.35101 * 120.04120 * 180.02562 * 21 20 19 23 23 H 0.96999 * 120.00530 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46745 * 59.99834 * 9 7 2 25 25 H 1.09000 * 109.46741 * 300.00494 * 9 7 2 26 26 H 1.09001 * 109.46771 * 60.00431 * 10 9 7 27 27 H 1.08994 * 109.47270 * 299.99906 * 10 9 7 28 28 H 0.97003 * 119.99756 * 0.02562 * 11 10 9 29 29 H 0.96996 * 119.99665 * 4.94837 * 14 12 11 30 30 H 1.08001 * 119.95699 * 179.97438 * 18 16 15 31 31 H 1.08001 * 119.91501 * 179.97438 * 19 18 16 32 32 H 1.08000 * 119.95564 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5131 -4.9307 -0.0012 12 6 2.1870 -6.0979 -0.0016 13 16 3.8990 -6.0978 -0.0022 14 7 1.5132 -7.2652 -0.0016 15 6 2.2103 -8.4767 0.1027 16 6 2.5011 -9.0077 1.3538 17 9 2.1174 -8.3537 2.4720 18 6 3.1888 -10.2040 1.4526 19 6 3.5872 -10.8709 0.3088 20 6 3.2994 -10.3461 -0.9376 21 6 2.6120 -9.1503 -1.0447 22 9 2.3308 -8.6386 -2.2630 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6249 -2.5571 0.8897 26 1 2.8728 -3.6046 0.8878 27 1 2.8715 -3.6038 -0.8922 28 1 0.5431 -4.9308 -0.0005 29 1 0.5460 -7.2667 -0.0737 30 1 3.4155 -10.6171 2.4244 31 1 4.1243 -11.8045 0.3891 32 1 3.6120 -10.8702 -1.8287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247104172.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = -70.241421 kcal Electronic energy + Delta-G solvation = -19420.210199 eV Core-core repulsion = 15949.040208 eV Total energy + Delta-G solvation = -3471.169991 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.065 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.11924 -50.09122 -40.83088 -39.33004 -36.95371 -35.10121 -32.22605 -31.35987 -30.34633 -27.01803 -25.06783 -24.05197 -23.97441 -23.04818 -20.04859 -19.55321 -18.88305 -18.47969 -18.43474 -17.08920 -16.88287 -16.72058 -16.53303 -16.42170 -16.32101 -16.02325 -15.70736 -15.32993 -14.57273 -14.33537 -13.77993 -13.35325 -13.16880 -13.02036 -12.83297 -12.81520 -12.55612 -12.41324 -12.16860 -11.73274 -11.44166 -10.66693 -10.40788 -10.14532 -9.79366 -9.18412 -8.75300 -8.28291 -6.38235 -0.24428 -0.04887 0.16667 0.75972 1.33917 1.40218 1.42744 1.55551 2.29199 2.34254 2.46117 2.76178 3.07671 3.36537 3.77837 3.78805 4.14618 4.19414 4.26981 4.39084 4.70541 4.76174 4.84457 4.94746 5.02847 5.12724 5.18032 5.41712 5.46767 5.58928 5.72367 5.85371 6.06931 6.21627 6.74915 7.31575 8.83843 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.003430 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.042474 B = 8162.428376 C = 8328.847777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.149 3.851 11 N -0.652 5.652 12 C 0.582 3.418 13 S -0.710 6.710 14 N -0.631 5.631 15 C 0.050 3.950 16 C 0.125 3.875 17 F -0.139 7.139 18 C -0.153 4.153 19 C -0.032 4.032 20 C -0.153 4.153 21 C 0.129 3.871 22 F -0.138 7.138 23 H 0.266 0.734 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.414 0.586 29 H 0.423 0.577 30 H 0.174 0.826 31 H 0.194 0.806 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -25.762 0.659 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.015 4.015 10 C 0.026 3.974 11 N -0.277 5.277 12 C 0.220 3.780 13 S -0.586 6.586 14 N -0.263 5.263 15 C -0.045 4.045 16 C 0.104 3.896 17 F -0.117 7.117 18 C -0.172 4.172 19 C -0.050 4.050 20 C -0.172 4.172 21 C 0.108 3.892 22 F -0.116 7.116 23 H 0.075 0.925 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.252 0.748 29 H 0.265 0.735 30 H 0.191 0.809 31 H 0.211 0.789 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.365 -25.481 0.664 25.599 hybrid contribution -1.787 1.681 -0.099 2.456 sum 0.578 -23.800 0.565 23.814 Atomic orbital electron populations 1.70049 1.07506 1.28028 1.51030 1.25834 0.95772 1.03057 0.94319 0.85396 0.79061 0.78752 0.77883 1.18924 1.20232 1.20222 1.21416 0.93723 0.91497 1.51521 0.92046 1.19188 0.94157 0.91562 0.96628 1.21731 0.94826 0.78539 1.02335 1.45299 1.10873 1.04405 1.67161 1.21989 0.94565 0.82041 0.79440 1.93434 0.92873 1.95499 1.76749 1.41747 1.10214 1.01248 1.73117 1.17317 1.06706 0.87711 0.92733 1.17933 0.98359 0.93033 0.80276 1.91511 1.89048 1.81119 1.50037 1.21563 0.99364 0.93095 1.03167 1.21472 0.94476 1.00196 0.88835 1.21570 0.99728 0.93934 1.01960 1.17910 0.98476 0.94350 0.78485 1.91510 1.91524 1.87208 1.41355 0.92496 0.97047 0.97063 0.91376 0.91353 0.74758 0.73510 0.80853 0.78880 0.80817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.29 21.45 0.28 -53.42 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.09 5.09 29.85 0.15 1.25 16 10 C 0.15 6.23 5.07 86.38 0.44 6.67 16 11 N -0.65 -21.93 5.56 -350.18 -1.95 -23.87 16 12 C 0.58 19.80 7.95 179.05 1.42 21.22 16 13 S -0.71 -30.20 27.97 -56.49 -1.58 -31.78 16 14 N -0.63 -16.39 4.93 -189.62 -0.94 -17.32 16 15 C 0.05 1.22 4.61 38.17 0.18 1.40 16 16 C 0.13 2.80 7.31 22.47 0.16 2.96 16 17 F -0.14 -3.67 17.08 44.97 0.77 -2.90 16 18 C -0.15 -2.11 10.02 22.30 0.22 -1.89 16 19 C -0.03 -0.30 10.04 22.28 0.22 -0.07 16 20 C -0.15 -2.10 10.02 22.30 0.22 -1.88 16 21 C 0.13 2.87 7.31 22.47 0.16 3.03 16 22 F -0.14 -3.61 17.08 44.97 0.77 -2.84 16 23 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 3.05 7.99 -2.39 -0.02 3.03 16 27 H 0.07 3.06 7.99 -2.39 -0.02 3.04 16 28 H 0.41 11.40 8.49 -92.71 -0.79 10.61 16 29 H 0.42 8.01 8.84 -92.71 -0.82 7.19 16 30 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.19 0.04 8.06 -2.91 -0.02 0.02 16 32 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -74.52 308.56 2.84 -71.68 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.43 Total: 10.91 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 3.88 Total: 3.91 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -2.60 Total: -94.62 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.54 Total: -5.74 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -30.20 SS G_CDS: -1.58 Total: -31.78 kcal Total: -74.52 2.84 -71.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247104172.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.440 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds