Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46897 * 2 1 4 4 C 1.50694 * 109.47069 * 119.99645 * 2 1 3 5 5 H 1.07999 * 119.99795 * 120.00355 * 4 2 1 6 6 C 1.37886 * 120.00312 * 300.00655 * 4 2 1 7 7 N 1.31513 * 119.99509 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99942 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47203 * 59.99953 * 8 6 4 10 10 H 1.48503 * 109.46429 * 179.97438 * 8 6 4 11 11 H 1.48488 * 109.47139 * 299.99782 * 8 6 4 12 12 N 1.46494 * 109.47658 * 240.00284 * 2 1 3 13 13 C 1.34775 * 120.00354 * 84.99954 * 12 2 1 14 14 S 1.71195 * 120.00047 * 359.97438 * 13 12 2 15 15 N 1.34779 * 120.00308 * 180.02562 * 13 12 2 16 16 C 1.40157 * 120.00462 * 174.84267 * 15 13 12 17 17 C 1.38978 * 120.08540 * 271.18656 * 16 15 13 18 18 F 1.35104 * 120.04444 * 0.02562 * 17 16 15 19 19 C 1.38342 * 119.91318 * 179.76779 * 17 16 15 20 20 C 1.38269 * 120.08551 * 0.52407 * 19 17 16 21 21 C 1.38277 * 120.16776 * 359.70320 * 20 19 17 22 22 C 1.38328 * 120.08704 * 0.04376 * 21 20 19 23 23 F 1.35099 * 120.04546 * 179.97438 * 22 21 20 24 24 H 1.09007 * 109.47056 * 60.00278 * 1 2 3 25 25 H 1.08997 * 109.46750 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47568 * 299.99832 * 1 2 3 27 27 H 0.97006 * 119.99349 * 179.97438 * 7 6 4 28 28 H 0.97004 * 119.99443 * 264.99839 * 12 2 1 29 29 H 0.97006 * 119.99457 * 354.83786 * 15 13 12 30 30 H 1.08001 * 119.96189 * 180.25058 * 19 17 16 31 31 H 1.07994 * 119.91879 * 179.71887 * 20 19 17 32 32 H 1.07999 * 119.95331 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8062 -1.1208 4.0083 10 1 1.8267 -0.4198 5.2205 11 1 1.8258 -2.5201 4.0078 12 7 2.0184 -0.6905 -1.1961 13 6 2.1472 -0.0182 -2.3571 14 16 1.7394 1.6427 -2.4342 15 7 2.5961 -0.6536 -3.4576 16 6 2.6280 0.0151 -4.6890 17 6 1.5187 -0.0126 -5.5257 18 9 0.4070 -0.6839 -5.1532 19 6 1.5523 0.6527 -6.7382 20 6 2.6915 1.3355 -7.1229 21 6 3.7988 1.3613 -6.2952 22 6 3.7711 0.7029 -5.0789 23 9 4.8537 0.7283 -4.2711 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7086 1.1614 3.4844 28 1 2.2492 -1.6317 -1.1525 29 1 2.8972 -1.5738 -3.3975 30 1 0.6892 0.6351 -7.3873 31 1 2.7164 1.8501 -8.0720 32 1 4.6867 1.8961 -6.5988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247110148.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = -42.288665 kcal Electronic energy + Delta-G solvation = -20023.798292 eV Core-core repulsion = 16553.840423 eV Total energy + Delta-G solvation = -3469.957869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.065 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.02479 -48.98641 -39.53972 -37.96237 -35.51124 -32.85587 -30.46500 -30.18498 -28.44509 -25.41869 -23.90583 -23.01690 -22.65004 -21.03066 -18.53719 -18.49820 -17.73491 -17.38389 -16.18897 -15.75397 -15.69346 -15.58463 -15.28342 -14.87942 -14.76027 -14.41826 -13.89071 -13.54043 -12.86038 -12.61066 -12.29265 -12.08963 -11.97015 -11.59286 -11.14576 -10.97589 -10.72700 -10.52802 -10.36284 -10.29574 -9.18518 -9.13967 -8.86582 -8.84922 -8.47173 -7.12577 -6.65834 -6.19255 -4.30956 0.73582 0.86412 1.97873 2.51314 3.00430 3.21185 3.22163 3.27220 3.28184 3.73114 4.11912 4.29193 4.34685 4.53592 4.69057 4.94250 5.12801 5.27453 5.66433 5.70130 5.83307 5.97632 6.23056 6.48329 6.70021 6.83524 7.03157 7.04764 7.37104 7.51174 7.58282 7.83434 8.06666 8.24737 8.70408 9.34683 10.85911 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.030430 B = 0.004433 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.920686 B = 6314.401421 C = 6629.564563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.083 0.917 4 C -0.547 4.547 5 H 0.059 0.941 6 C 0.072 3.928 7 N -0.874 5.874 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.640 5.640 13 C 0.561 3.439 14 S -0.645 6.645 15 N -0.662 5.662 16 C 0.091 3.909 17 C 0.148 3.852 18 F -0.123 7.123 19 C -0.162 4.162 20 C -0.055 4.055 21 C -0.162 4.162 22 C 0.152 3.848 23 F -0.121 7.121 24 H 0.031 0.969 25 H 0.022 0.978 26 H 0.097 0.903 27 H 0.268 0.732 28 H 0.389 0.611 29 H 0.402 0.598 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 -4.075 -18.796 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.101 0.899 4 C -0.585 4.585 5 H 0.077 0.923 6 C -0.133 4.133 7 N -0.510 5.510 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.261 5.261 13 C 0.201 3.799 14 S -0.519 6.519 15 N -0.296 5.296 16 C -0.005 4.005 17 C 0.126 3.874 18 F -0.101 7.101 19 C -0.182 4.182 20 C -0.074 4.074 21 C -0.182 4.182 22 C 0.131 3.869 23 F -0.099 7.099 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.224 0.776 29 H 0.240 0.760 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.583 -2.767 -18.460 19.007 hybrid contribution 0.731 -2.324 1.295 2.759 sum 4.314 -5.091 -17.165 18.416 Atomic orbital electron populations 1.22041 0.96983 0.99047 1.02348 1.19488 0.92111 0.95428 0.77092 0.89901 1.21068 1.33623 1.13665 0.90167 0.92268 1.24830 0.94621 0.94885 0.98919 1.69901 1.34943 1.21876 1.24286 0.86461 0.79193 0.79496 0.81692 1.20116 1.20893 1.20175 1.46175 1.58147 1.12811 1.08928 1.22425 0.81162 0.94990 0.81325 1.93193 1.71669 0.94451 1.92624 1.41899 1.67475 1.15526 1.04734 1.16994 0.93775 1.02907 0.86826 1.17600 0.82034 0.94188 0.93588 1.91545 1.49660 1.77374 1.91548 1.21088 1.00762 1.00486 0.95817 1.20859 0.91005 0.96125 0.99364 1.21101 1.01334 1.02409 0.93324 1.17593 0.83349 0.96740 0.89245 1.91551 1.51746 1.94346 1.72304 0.95019 0.95905 0.88503 0.92235 0.77644 0.75961 0.83695 0.83724 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.21 37.16 0.34 -3.26 16 2 C 0.26 6.47 2.32 -69.09 -0.16 6.31 16 3 H 0.08 2.40 6.82 -51.93 -0.35 2.04 16 4 C -0.55 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.92 5.30 -17.82 -0.09 1.82 16 7 N -0.87 -24.37 11.32 55.43 0.63 -23.74 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.64 -13.06 5.07 -56.66 -0.29 -13.34 16 13 C 0.56 11.23 7.92 -86.92 -0.69 10.54 16 14 S -0.65 -15.54 26.78 -107.50 -2.88 -18.42 16 15 N -0.66 -10.28 4.93 -11.29 -0.06 -10.34 16 16 C 0.09 1.32 4.61 -83.50 -0.38 0.94 16 17 C 0.15 1.98 7.31 -39.27 -0.29 1.70 16 18 F -0.12 -1.85 17.08 2.25 0.04 -1.81 16 19 C -0.16 -1.61 10.02 -39.53 -0.40 -2.01 16 20 C -0.06 -0.46 10.04 -39.56 -0.40 -0.85 16 21 C -0.16 -1.62 10.02 -39.53 -0.40 -2.02 16 22 C 0.15 2.07 7.31 -39.27 -0.29 1.78 16 23 F -0.12 -1.85 17.08 2.25 0.04 -1.82 16 24 H 0.03 0.77 7.48 -51.92 -0.39 0.39 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 2.62 6.07 -51.93 -0.32 2.30 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 6.70 8.56 -40.82 -0.35 6.35 16 29 H 0.40 4.84 8.84 -40.82 -0.36 4.48 16 30 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -32.52 302.03 -9.04 -41.55 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.00 Total: 7.54 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.05 Total: 0.42 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.28 Total: -47.42 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.62 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -15.54 SS G_CDS: -2.88 Total: -18.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.52 -9.04 -41.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247110148.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.737 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds