Wall clock time and date at job start Tue Mar 31 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48497 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46964 * 299.99721 * 3 2 1 6 6 H 1.48499 * 109.47381 * 59.99396 * 3 2 1 7 7 C 1.40431 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 180.02562 * 7 2 1 9 9 C 1.40390 * 119.99501 * 0.02562 * 7 2 1 10 10 N 1.33173 * 126.67723 * 179.97438 * 9 7 2 11 11 C 1.34303 * 105.48119 * 180.02562 * 10 9 7 12 12 C 1.48450 * 126.20497 * 179.97438 * 11 10 9 13 13 C 1.39637 * 119.78049 * 359.74188 * 12 11 10 14 14 C 1.36620 * 120.21234 * 179.90099 * 13 12 11 15 15 C 1.39698 * 119.87371 * 0.54101 * 14 13 12 16 16 C 1.40488 * 120.42078 * 359.44252 * 15 14 13 17 17 C 1.38670 * 119.19847 * 0.39452 * 16 15 14 18 18 O 1.35347 * 120.83861 * 180.54336 * 16 15 14 19 19 C 1.42731 * 118.73685 * 337.50551 * 18 16 15 20 20 C 1.53564 * 109.34206 * 52.63340 * 19 18 16 21 21 C 1.47376 * 120.61819 * 179.25333 * 15 14 13 22 22 O 1.21298 * 121.73984 * 348.07635 * 21 15 14 23 23 N 1.31248 * 107.59430 * 359.97438 * 11 10 9 24 24 O 1.21273 * 110.53239 * 0.02562 * 23 11 10 25 25 H 0.96997 * 120.00506 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.89206 * 0.16307 * 13 12 11 27 27 H 1.08000 * 120.06059 * 180.27381 * 14 13 12 28 28 H 1.07999 * 120.07404 * 179.79716 * 17 16 15 29 29 H 1.09001 * 109.49310 * 172.59519 * 19 18 16 30 30 H 1.08998 * 109.49051 * 292.67271 * 19 18 16 31 31 H 1.09007 * 109.91293 * 60.68953 * 20 19 18 32 32 H 1.08999 * 109.91507 * 181.77503 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.6991 1.3465 0.0006 5 1 1.8804 2.3964 -1.2126 6 1 1.8803 2.3966 1.2124 7 6 2.0075 -1.2161 0.0005 8 1 3.0874 -1.2161 0.0010 9 6 1.3055 -2.4319 0.0005 10 7 1.8327 -3.6548 0.0005 11 6 0.7861 -4.4964 0.0000 12 6 0.8534 -5.9794 -0.0008 13 6 2.0955 -6.6173 -0.0064 14 6 2.1677 -7.9816 -0.0052 15 6 0.9949 -8.7405 -0.0096 16 6 -0.2605 -8.1098 -0.0036 17 6 -0.3216 -6.7245 -0.0016 18 8 -1.4021 -8.8368 0.0031 19 6 -1.3624 -10.1812 -0.4745 20 6 -0.2466 -10.9464 0.2519 21 6 1.0537 -10.2130 -0.0248 22 8 2.0870 -10.8081 -0.2470 23 7 -0.3071 -3.7701 0.0002 24 8 -0.0328 -2.5888 0.0004 25 1 -0.4851 0.8400 -0.0004 26 1 3.0020 -6.0303 -0.0075 27 1 3.1298 -8.4724 -0.0051 28 1 -1.2791 -6.2250 -0.0003 29 1 -2.3202 -10.6644 -0.2812 30 1 -1.1647 -10.1807 -1.5464 31 1 -0.4437 -10.9610 1.3240 32 1 -0.1873 -11.9661 -0.1284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247386249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:28 Heat of formation + Delta-G solvation = -0.754940 kcal Electronic energy + Delta-G solvation = -21061.094904 eV Core-core repulsion = 17568.581636 eV Total energy + Delta-G solvation = -3492.513267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.19251 -40.94101 -38.52687 -37.70998 -34.23970 -33.83812 -32.52694 -31.39400 -30.28098 -29.67035 -26.64019 -24.94107 -24.42372 -22.42959 -21.58217 -21.00363 -19.53805 -18.57646 -17.17792 -16.84022 -16.70612 -15.99181 -15.55668 -15.40724 -15.02765 -14.77544 -14.58991 -14.16403 -13.91176 -13.70929 -13.29183 -13.07072 -12.38132 -12.25280 -11.83998 -11.72131 -11.62522 -11.55372 -11.28466 -10.86352 -10.56232 -10.27097 -10.26062 -9.95511 -9.80852 -9.13277 -8.95151 -8.38250 -8.02403 -7.18767 -5.14789 0.52649 1.52239 2.15639 2.71012 2.91681 2.96070 2.99612 3.19240 3.61026 3.67049 3.77209 4.23298 4.34047 4.52347 4.67223 4.73484 4.76273 4.92188 5.14106 5.17934 5.18647 5.41455 5.44839 5.53536 5.58114 5.96328 6.11423 6.20129 6.43132 6.68261 6.74940 6.84857 7.13978 7.27481 7.33965 7.75143 7.94946 8.15679 8.33039 9.79938 10.13781 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.044826 B = 0.003364 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.480688 B = 8321.743313 C = 8909.144391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.070 3.930 3 Si 0.938 3.062 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.411 4.411 8 H 0.116 0.884 9 C 0.304 3.696 10 N -0.601 5.601 11 C 0.177 3.823 12 C 0.094 3.906 13 C -0.129 4.129 14 C -0.031 4.031 15 C -0.260 4.260 16 C 0.175 3.825 17 C -0.141 4.141 18 O -0.309 6.309 19 C 0.070 3.930 20 C -0.204 4.204 21 C 0.404 3.596 22 O -0.453 6.453 23 N -0.444 5.444 24 O 0.058 5.942 25 H 0.294 0.706 26 H 0.144 0.856 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 -12.276 -0.076 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.156 4.156 3 Si 0.760 3.240 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.449 4.449 8 H 0.134 0.866 9 C 0.114 3.886 10 N -0.345 5.345 11 C -0.093 4.093 12 C 0.091 3.909 13 C -0.149 4.149 14 C -0.049 4.049 15 C -0.263 4.263 16 C 0.129 3.871 17 C -0.161 4.161 18 O -0.223 6.223 19 C -0.005 4.005 20 C -0.242 4.242 21 C 0.282 3.718 22 O -0.329 6.329 23 N -0.170 5.170 24 O 0.006 5.994 25 H 0.105 0.895 26 H 0.162 0.838 27 H 0.155 0.845 28 H 0.163 0.837 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.190 -12.989 -0.137 13.173 hybrid contribution 0.343 0.844 -0.001 0.911 sum -1.847 -12.145 -0.138 12.286 Atomic orbital electron populations 1.69628 1.07812 1.31013 1.30340 1.26221 0.95161 1.02431 0.91757 0.85752 0.80593 0.78648 0.78982 1.17759 1.19269 1.19271 1.18671 0.95180 0.85319 1.45743 0.86605 1.24186 0.79615 0.93923 0.90865 1.72366 1.27392 0.98354 1.36353 1.23175 0.87174 0.94482 1.04466 1.17563 0.92614 0.87778 0.92901 1.20967 0.98055 0.93835 1.02033 1.20769 0.97242 0.93196 0.93693 1.20463 0.93855 0.95131 1.16820 1.18856 0.83878 0.90554 0.93820 1.20586 0.99667 0.90008 1.05846 1.85768 1.30879 1.25684 1.79921 1.22978 0.99962 0.79482 0.98059 1.23054 0.94997 1.01601 1.04527 1.22398 0.89305 0.88476 0.71581 1.90534 1.34042 1.71390 1.36929 1.74606 1.23874 0.91108 1.27431 1.85536 1.25969 1.17541 1.70379 0.89514 0.83783 0.84549 0.83704 0.86262 0.91255 0.86927 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.64 12.05 55.57 0.67 -17.97 16 2 C 0.07 1.62 5.50 -17.28 -0.10 1.53 16 3 Si 0.94 16.88 29.56 -169.99 -5.03 11.86 16 4 H -0.25 -4.49 7.11 56.52 0.40 -4.09 16 5 H -0.27 -4.72 7.11 56.52 0.40 -4.31 16 6 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.41 -10.44 9.48 -37.95 -0.36 -10.80 16 8 H 0.12 2.76 7.85 -52.49 -0.41 2.35 16 9 C 0.30 8.35 7.80 -16.32 -0.13 8.23 16 10 N -0.60 -15.94 11.26 -11.63 -0.13 -16.07 16 11 C 0.18 4.41 7.77 -156.52 -1.22 3.20 16 12 C 0.09 1.91 5.88 -104.84 -0.62 1.29 16 13 C -0.13 -2.31 9.62 -39.64 -0.38 -2.69 16 14 C -0.03 -0.48 9.59 -39.62 -0.38 -0.86 16 15 C -0.26 -3.89 5.84 -104.79 -0.61 -4.50 16 16 C 0.17 2.70 6.55 -38.57 -0.25 2.45 16 17 C -0.14 -2.55 9.61 -39.09 -0.38 -2.92 16 18 O -0.31 -4.03 10.22 -17.73 -0.18 -4.21 16 19 C 0.07 0.61 6.98 37.45 0.26 0.87 16 20 C -0.20 -1.79 6.45 -27.03 -0.17 -1.96 16 21 C 0.40 5.31 6.97 -30.03 -0.21 5.10 16 22 O -0.45 -7.03 17.41 5.54 0.10 -6.93 16 23 N -0.44 -11.79 11.80 31.47 0.37 -11.41 16 24 O 0.06 1.64 9.72 15.15 0.15 1.78 16 25 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 26 H 0.14 2.60 7.83 -52.49 -0.41 2.19 16 27 H 0.14 1.88 7.80 -52.49 -0.41 1.47 16 28 H 0.15 2.68 7.83 -52.49 -0.41 2.27 16 29 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -30.33 293.57 -6.64 -36.96 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -2.47 Total: 2.66 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -4.54 Total: -1.08 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.91 Total: -45.45 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.06 Total: -9.36 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.33 -6.64 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.207 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds