Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 119.99918 * 2 1 4 4 C 1.50698 * 109.47326 * 269.99909 * 3 2 1 5 5 H 1.08005 * 119.99783 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00490 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99659 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00445 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46888 * 59.99005 * 8 6 4 10 10 H 1.48496 * 109.47577 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46868 * 299.99848 * 8 6 4 12 12 C 1.34773 * 119.99891 * 179.97438 * 2 1 3 13 13 S 1.71192 * 120.00105 * 180.02562 * 12 2 1 14 14 N 1.34778 * 119.99757 * 359.97438 * 12 2 1 15 15 C 1.40020 * 119.99647 * 184.26963 * 14 12 2 16 16 C 1.38796 * 120.06543 * 312.73735 * 15 14 12 17 17 C 1.38353 * 119.92819 * 179.77109 * 16 15 14 18 18 F 1.35091 * 119.97136 * 180.23005 * 17 16 15 19 19 C 1.38499 * 120.05623 * 0.50582 * 17 16 15 20 20 C 1.38261 * 120.13395 * 359.74499 * 19 17 16 21 21 C 1.38297 * 120.06845 * 0.02562 * 20 19 17 22 22 F 1.35095 * 120.02725 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47332 * 270.00043 * 1 2 3 24 24 H 1.09005 * 109.47164 * 29.99949 * 1 2 3 25 25 H 1.08998 * 109.47277 * 149.99977 * 1 2 3 26 26 H 1.09000 * 109.47602 * 30.00119 * 3 2 1 27 27 H 1.09005 * 109.47153 * 150.00151 * 3 2 1 28 28 H 0.97002 * 119.99520 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00423 * 4.00160 * 14 12 2 30 30 H 1.08000 * 120.03786 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.92849 * 179.72837 * 19 17 16 32 32 H 1.07996 * 119.96491 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4170 -3.4339 9 1 2.1398 3.5952 -4.1333 10 1 4.1802 4.7030 -3.4340 11 1 4.2394 2.3819 -4.1346 12 6 2.1389 -1.1672 0.0005 13 16 3.8508 -1.1672 0.0012 14 7 1.4649 -2.3344 0.0016 15 6 2.1621 -3.5452 0.0924 16 6 3.2699 -3.7718 -0.7125 17 6 3.9596 -4.9674 -0.6171 18 9 5.0407 -5.1870 -1.3968 19 6 3.5391 -5.9416 0.2731 20 6 2.4328 -5.7205 1.0724 21 6 1.7423 -4.5255 0.9848 22 9 0.6611 -4.3106 1.7658 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0310 4.4435 -0.8505 29 1 0.4967 -2.3354 -0.0567 30 1 3.5957 -3.0140 -1.4097 31 1 4.0764 -6.8759 0.3428 32 1 2.1071 -6.4822 1.7653 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248543238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = -48.667627 kcal Electronic energy + Delta-G solvation = -19931.791695 eV Core-core repulsion = 16461.557213 eV Total energy + Delta-G solvation = -3470.234481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.065 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.03002 -49.87048 -41.16344 -39.43295 -36.69334 -34.70314 -31.59961 -30.83720 -29.91933 -28.51188 -25.73514 -24.25575 -23.56339 -22.59348 -20.00287 -19.20521 -18.77507 -18.52669 -18.00234 -17.62199 -16.87655 -16.64703 -16.45633 -16.31758 -15.97842 -15.37647 -15.36659 -14.94781 -14.49102 -14.13230 -13.89001 -13.72232 -13.43225 -13.31268 -12.89323 -12.79451 -12.65318 -12.40605 -12.22470 -12.14534 -11.81897 -10.71249 -10.61673 -9.93746 -9.39367 -8.87216 -8.23026 -8.19506 -6.33971 -0.30667 0.02493 0.48623 0.89673 1.37203 1.42713 1.46805 1.52639 2.21406 2.35708 2.41387 3.03083 3.11293 3.23596 3.63445 3.91932 3.96730 4.04478 4.31752 4.34330 4.53775 4.73655 4.84132 4.94129 5.02993 5.07102 5.13236 5.17190 5.50294 5.61153 5.73590 5.87442 5.97247 6.25318 6.69800 7.32857 8.85382 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.005037 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.662561 B = 5556.997334 C = 6412.667797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.535 5.535 3 C 0.251 3.749 4 C -0.529 4.529 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.260 1.260 10 H -0.280 1.280 11 H -0.283 1.283 12 C 0.571 3.429 13 S -0.723 6.723 14 N -0.627 5.627 15 C 0.116 3.884 16 C -0.096 4.096 17 C 0.079 3.921 18 F -0.143 7.143 19 C -0.105 4.105 20 C -0.107 4.107 21 C 0.082 3.918 22 F -0.133 7.133 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.267 0.733 29 H 0.423 0.577 30 H 0.133 0.867 31 H 0.183 0.817 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.012 -19.208 2.837 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.236 5.236 3 C 0.130 3.870 4 C -0.568 4.568 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.209 1.209 12 C 0.209 3.791 13 S -0.590 6.590 14 N -0.259 5.259 15 C 0.020 3.980 16 C -0.120 4.120 17 C 0.058 3.942 18 F -0.122 7.122 19 C -0.124 4.124 20 C -0.126 4.126 21 C 0.060 3.940 22 F -0.111 7.111 23 H 0.112 0.888 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.267 0.733 30 H 0.151 0.849 31 H 0.200 0.800 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.943 -18.788 2.904 21.010 hybrid contribution -0.655 1.079 -0.973 1.593 sum -9.598 -17.710 1.932 20.236 Atomic orbital electron populations 1.22439 0.76623 1.05614 1.04622 1.47667 1.08656 1.05038 1.62231 1.19514 0.92888 0.76728 0.97825 1.21280 1.37387 1.06292 0.91828 0.93082 1.25628 0.94751 0.96445 1.01282 1.70017 1.38590 1.14756 1.32773 0.85563 0.78733 0.77238 0.79838 1.18495 1.20530 1.20890 1.21699 0.93910 0.82324 0.81146 1.93366 0.94212 1.93681 1.77751 1.41889 1.10170 1.01297 1.72510 1.17106 0.97276 0.85123 0.98455 1.21237 0.94899 0.95933 0.99927 1.17606 0.86911 0.94826 0.94865 1.91489 1.52529 1.94866 1.73292 1.21368 0.97113 0.99881 0.93998 1.21138 0.94685 0.95720 1.01085 1.17646 0.88471 0.96204 0.91719 1.91496 1.51967 1.95318 1.72340 0.88774 0.88482 0.88783 0.94235 0.94116 0.92424 0.73295 0.84882 0.80008 0.79315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.26 10.24 127.77 1.31 2.57 16 2 N -0.53 -20.66 2.86 -739.21 -2.11 -22.77 16 3 C 0.25 12.57 4.92 85.63 0.42 12.99 16 4 C -0.53 -28.88 9.39 25.60 0.24 -28.64 16 5 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 6 C 0.02 1.06 5.46 84.65 0.46 1.52 16 7 N -0.92 -54.37 13.29 21.45 0.28 -54.08 16 8 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 C 0.57 22.58 7.56 179.05 1.35 23.93 16 13 S -0.72 -36.40 24.39 -56.49 -1.38 -37.78 16 14 N -0.63 -18.35 5.03 -189.83 -0.95 -19.30 16 15 C 0.12 3.28 5.88 38.16 0.22 3.51 16 16 C -0.10 -3.05 7.86 22.43 0.18 -2.88 16 17 C 0.08 2.09 7.30 22.36 0.16 2.25 16 18 F -0.14 -4.15 17.26 44.97 0.78 -3.37 16 19 C -0.10 -1.80 10.02 22.34 0.22 -1.58 16 20 C -0.11 -1.67 10.02 22.29 0.22 -1.45 16 21 C 0.08 1.80 7.31 22.48 0.16 1.96 16 22 F -0.13 -2.81 17.08 44.97 0.77 -2.04 16 23 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.10 2.48 8.07 -2.38 -0.02 2.46 16 25 H 0.09 1.68 6.31 -2.39 -0.02 1.66 16 26 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 27 H 0.04 2.39 6.58 -2.38 -0.02 2.37 16 28 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.42 9.06 6.52 -92.71 -0.60 8.46 16 30 H 0.13 5.23 6.31 -4.73 -0.03 5.20 16 31 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -74.66 298.95 4.93 -69.73 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.56 Total: 8.90 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 4.96 Total: 14.19 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -2.78 Total: -96.15 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 1.54 Total: -5.42 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -36.40 SS G_CDS: -1.38 Total: -37.78 kcal Total: -74.66 4.93 -69.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248543238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.065 kcal (2) G-P(sol) polarization free energy of solvation -74.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds