Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47423 * 2 1 4 4 H 1.08998 * 109.47293 * 304.90477 * 3 2 1 5 5 C 1.50698 * 109.47563 * 184.89825 * 3 2 1 6 6 H 1.07998 * 120.00440 * 245.45163 * 5 3 2 7 7 C 1.37877 * 119.99830 * 65.45208 * 5 3 2 8 8 N 1.31517 * 120.00009 * 9.47069 * 7 5 3 9 9 Si 1.86800 * 120.00105 * 189.47241 * 7 5 3 10 10 H 1.48495 * 109.47112 * 84.99608 * 9 7 5 11 11 H 1.48501 * 109.47124 * 204.99475 * 9 7 5 12 12 H 1.48498 * 109.47021 * 324.99239 * 9 7 5 13 13 N 1.46501 * 109.47177 * 64.89863 * 3 2 1 14 14 C 1.34782 * 120.00225 * 275.00360 * 13 3 2 15 15 O 1.21533 * 119.99553 * 359.97438 * 14 13 3 16 16 C 1.47995 * 120.00136 * 179.97438 * 14 13 3 17 17 N 1.32839 * 119.74506 * 359.95085 * 16 14 13 18 18 C 1.31455 * 121.69462 * 179.97438 * 17 16 14 19 19 C 1.38626 * 120.99419 * 0.05244 * 18 17 16 20 20 C 1.38573 * 119.38274 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 120.78246 * 179.97438 * 20 19 18 22 22 C 1.39119 * 118.44260 * 359.97438 * 20 19 18 23 23 F 1.35098 * 120.51099 * 179.72819 * 22 20 19 24 24 H 1.09001 * 109.46844 * 59.99716 * 1 2 3 25 25 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47436 * 300.00299 * 1 2 3 27 27 H 1.08999 * 109.47436 * 239.99701 * 2 1 3 28 28 H 1.08997 * 109.47150 * 119.99887 * 2 1 3 29 29 H 0.96997 * 120.00181 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00052 * 95.00131 * 13 3 2 31 31 H 1.08000 * 119.49713 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.31163 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5421 1.4442 -0.1213 6 1 4.1493 1.8090 0.6939 7 6 4.1412 0.9800 -1.2731 8 7 3.4097 0.7114 -2.3325 9 14 5.9919 0.7327 -1.3288 10 1 6.3289 -0.6068 -0.7835 11 1 6.4619 0.8274 -2.7343 12 1 6.6562 1.7808 -0.5131 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3415 2.6329 0.4276 16 6 0.0391 3.3271 2.6274 17 7 0.8893 3.3586 3.6476 18 6 0.5796 3.9365 4.7870 19 6 -0.6555 4.5388 4.9695 20 6 -1.5757 4.5306 3.9334 21 17 -3.1333 5.2734 4.1226 22 6 -1.2219 3.9132 2.7380 23 9 -2.0888 3.8760 1.7025 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8312 0.3852 -3.1430 30 1 2.2687 2.1243 1.9978 31 1 1.2983 3.9417 5.5932 32 1 -0.8985 5.0100 5.9104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321534007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = -74.819527 kcal Electronic energy + Delta-G solvation = -20239.461376 eV Core-core repulsion = 16753.676367 eV Total energy + Delta-G solvation = -3485.785009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.19074 -41.63971 -40.21565 -37.98612 -36.98915 -34.42974 -33.63630 -32.80078 -32.07964 -29.04131 -26.27626 -24.99447 -24.56196 -22.52924 -21.29713 -19.80963 -18.87302 -18.67568 -17.93958 -17.38664 -17.11085 -16.73587 -16.20750 -16.09410 -15.38506 -15.07852 -14.76153 -14.65321 -14.58355 -14.03224 -13.92141 -13.51869 -13.35502 -13.28761 -12.92546 -12.61878 -12.35105 -12.21256 -12.10618 -11.67811 -11.34698 -11.12064 -10.75054 -10.72306 -10.53613 -10.29815 -9.70881 -8.19189 -6.32599 -0.74752 -0.38168 0.57168 1.46145 1.47445 1.57034 1.65077 2.13568 2.44120 2.52962 2.70849 3.07108 3.12578 3.33613 3.55164 4.10362 4.15874 4.43491 4.47141 4.49474 4.56243 4.68179 5.01962 5.18975 5.24850 5.37600 5.45177 5.59340 5.71344 5.84926 6.03729 6.41149 6.73831 6.86663 7.28177 7.43519 8.89691 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.004224 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.491714 B = 6627.002922 C = 7177.441964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.274 3.726 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.072 0.928 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.677 5.677 14 C 0.545 3.455 15 O -0.566 6.566 16 C 0.048 3.952 17 N -0.442 5.442 18 C 0.114 3.886 19 C -0.088 4.088 20 C -0.047 4.047 21 Cl -0.019 7.019 22 C 0.090 3.910 23 F -0.115 7.115 24 H 0.028 0.972 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.266 0.734 30 H 0.410 0.590 31 H 0.230 0.770 32 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 7.669 19.697 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.171 3.829 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.188 1.188 13 N -0.325 5.325 14 C 0.330 3.670 15 O -0.445 6.445 16 C -0.090 4.090 17 N -0.153 5.153 18 C -0.047 4.047 19 C -0.108 4.108 20 C -0.083 4.083 21 Cl 0.010 6.990 22 C 0.066 3.934 23 F -0.094 7.094 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.246 0.754 31 H 0.246 0.754 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.833 7.216 18.633 21.117 hybrid contribution -0.228 0.245 -0.632 0.715 sum -7.061 7.461 18.001 20.726 Atomic orbital electron populations 1.21690 0.96809 0.99544 1.00255 1.21704 0.93944 0.98744 1.00673 1.18534 0.94178 0.89236 0.80956 0.97522 1.21494 0.90989 1.44099 1.02338 0.90974 1.25768 1.03325 0.94615 0.94401 1.70133 1.37873 1.44576 1.02764 0.85400 0.78988 0.79106 0.77119 1.19428 1.21348 1.18800 1.46114 1.14521 1.53910 1.17958 1.18105 0.83112 0.79547 0.86270 1.90811 1.52535 1.61023 1.40180 1.21238 0.90715 1.01472 0.95571 1.67704 1.32232 1.15197 1.00212 1.23895 0.95809 0.90714 0.94233 1.22890 0.91596 0.96867 0.99424 1.21611 0.92005 1.00632 0.94016 1.98424 1.23702 1.79697 1.97146 1.18722 0.88737 1.00265 0.85687 1.91596 1.67465 1.93906 1.56401 0.95281 0.92970 0.94210 0.92494 0.93139 0.92533 0.75420 0.75385 0.77373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.51 71.98 0.61 -5.17 16 2 C -0.11 -5.53 5.50 30.59 0.17 -5.36 16 3 C 0.27 14.42 2.11 44.24 0.09 14.51 16 4 H 0.01 0.43 7.52 -2.39 -0.02 0.41 16 5 C -0.55 -29.63 8.66 25.60 0.22 -29.41 16 6 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.02 1.06 5.16 84.65 0.44 1.50 16 8 N -0.92 -53.31 12.16 21.45 0.26 -53.05 16 9 Si 0.97 42.22 29.55 68.60 2.03 44.25 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 13 N -0.68 -29.99 5.01 -448.84 -2.25 -32.24 16 14 C 0.55 23.73 6.37 86.83 0.55 24.28 16 15 O -0.57 -28.70 12.45 -3.82 -0.05 -28.75 16 16 C 0.05 1.59 6.75 41.88 0.28 1.88 16 17 N -0.44 -11.37 9.54 -184.85 -1.76 -13.13 16 18 C 0.11 1.61 11.18 84.84 0.95 2.56 16 19 C -0.09 -1.05 9.93 22.44 0.22 -0.83 16 20 C -0.05 -0.98 6.37 22.56 0.14 -0.84 16 21 Cl -0.02 -0.35 28.75 -2.72 -0.08 -0.43 16 22 C 0.09 2.76 7.29 22.78 0.17 2.92 16 23 F -0.12 -4.25 15.20 44.97 0.68 -3.57 16 24 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.04 1.80 5.65 -2.39 -0.01 1.78 16 27 H 0.06 3.09 6.80 -2.39 -0.02 3.08 16 28 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.41 16.11 7.85 -92.71 -0.73 15.38 16 31 H 0.23 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.21 0.47 8.06 -2.91 -0.02 0.44 16 Total: -1.00 -71.43 295.92 3.13 -68.30 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.45 Total: 12.58 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 3.85 Total: 6.05 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -3.75 Total: -98.42 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.05 Total: -28.75 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.68 Total: -3.57 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -71.43 3.13 -68.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321534007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.518 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds