Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00415 * 3 2 1 14 14 C 1.34778 * 119.99951 * 274.99836 * 13 3 2 15 15 O 1.21578 * 119.99841 * 359.97438 * 14 13 3 16 16 C 1.47615 * 120.00333 * 179.97438 * 14 13 3 17 17 C 1.40334 * 120.59711 * 270.00125 * 16 14 13 18 18 F 1.35103 * 120.88086 * 0.02562 * 17 16 14 19 19 C 1.38744 * 118.23666 * 179.97438 * 17 16 14 20 20 C 1.38147 * 119.30924 * 0.02562 * 19 17 16 21 21 N 1.32010 * 121.15622 * 359.97438 * 20 19 17 22 22 C 1.31814 * 121.94176 * 359.74678 * 21 20 19 23 23 Cl 1.73602 * 119.72341 * 180.29073 * 22 21 20 24 24 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 26 26 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 27 27 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 28 28 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 29 29 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 30 30 H 0.96995 * 120.00444 * 95.00053 * 13 3 2 31 31 H 1.07999 * 120.34910 * 180.02562 * 19 17 16 32 32 H 1.07996 * 119.42288 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5539 -0.3519 -0.7600 11 1 6.3834 0.9216 -2.8167 12 1 6.5576 2.0720 -0.6891 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6326 0.4319 16 6 0.0445 3.3238 2.6286 17 6 -0.5927 2.5978 3.6465 18 9 -0.8619 1.2825 3.4959 19 6 -0.9380 3.2664 4.8122 20 6 -0.6469 4.6116 4.9318 21 7 -0.0465 5.2697 3.9575 22 6 0.3072 4.6806 2.8326 23 17 1.1008 5.6000 1.5921 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8292 -0.0609 -2.9501 30 1 2.2720 2.1231 1.9977 31 1 -1.4292 2.7408 5.6177 32 1 -0.9144 5.1338 5.8384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519877243.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -55.664843 kcal Electronic energy + Delta-G solvation = -20547.488134 eV Core-core repulsion = 17062.533734 eV Total energy + Delta-G solvation = -3484.954399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.29434 -40.47897 -38.78908 -36.74783 -35.14939 -32.75713 -32.23559 -31.68976 -30.62439 -27.10711 -24.87333 -23.81289 -22.99377 -20.86338 -19.50371 -18.46855 -17.87001 -17.77807 -16.23331 -15.95066 -15.45428 -15.37589 -14.94398 -14.52437 -14.38452 -14.24568 -14.15332 -13.30936 -12.72668 -12.43536 -11.91219 -11.80559 -11.55745 -11.31661 -11.28300 -11.03677 -10.85058 -10.39683 -10.28120 -10.24095 -9.84622 -9.67186 -9.38068 -9.21918 -9.06949 -8.53989 -7.95608 -6.15001 -4.24556 0.40527 0.60022 1.59281 2.97309 3.12401 3.23306 3.30494 3.32532 3.58829 3.70499 4.17062 4.32412 4.56737 4.61262 4.87696 5.16730 5.23650 5.38113 5.44197 6.04863 6.36734 6.43155 6.62156 7.00991 7.13864 7.26008 7.29433 7.34708 7.56044 7.66508 7.84358 8.12666 8.49715 8.68658 8.93326 9.42149 10.90397 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.005690 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.650638 B = 4919.908764 C = 5638.959189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.688 5.688 14 C 0.552 3.448 15 O -0.522 6.522 16 C -0.188 4.188 17 C 0.187 3.813 18 F -0.108 7.108 19 C -0.209 4.209 20 C 0.152 3.848 21 N -0.484 5.484 22 C 0.227 3.773 23 Cl 0.007 6.993 24 H 0.025 0.975 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.102 0.898 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.390 0.610 31 H 0.160 0.840 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 5.811 14.196 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.335 5.335 14 C 0.333 3.667 15 O -0.399 6.399 16 C -0.196 4.196 17 C 0.159 3.841 18 F -0.086 7.086 19 C -0.230 4.230 20 C -0.005 4.005 21 N -0.196 5.196 22 C 0.063 3.937 23 Cl 0.036 6.964 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.177 0.823 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.760 6.579 13.261 16.274 hybrid contribution 1.062 -1.078 0.110 1.517 sum -5.698 5.501 13.371 15.541 Atomic orbital electron populations 1.21861 0.98336 0.98285 1.01192 1.21947 0.92625 0.99588 1.02497 1.18910 0.94511 0.89227 0.80391 0.92913 1.21189 0.90418 1.39219 1.06420 0.91976 1.24866 0.98633 0.94738 0.95303 1.69894 1.35157 1.37474 1.09339 0.86452 0.84802 0.78480 0.77420 1.20527 1.21037 1.19821 1.46514 1.13574 1.54494 1.18893 1.17500 0.83855 0.79757 0.85608 1.90819 1.51424 1.59165 1.38518 1.21185 1.05453 0.94655 0.98270 1.17826 0.94578 0.78723 0.93010 1.91631 1.90655 1.30644 1.95635 1.22220 1.05559 0.96975 0.98224 1.22700 0.91138 0.90272 0.96345 1.67160 1.12808 1.39421 1.00218 1.21577 0.94087 0.87555 0.90529 1.98479 1.76312 1.73788 1.47817 0.95637 0.94371 0.93085 0.88034 0.94891 0.92499 0.77773 0.82279 0.80415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.33 11.30 55.43 0.63 -23.71 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.69 -14.34 5.02 -55.95 -0.28 -14.62 16 14 C 0.55 11.18 4.61 -12.43 -0.06 11.12 16 15 O -0.52 -12.32 14.24 5.30 0.08 -12.24 16 16 C -0.19 -3.08 5.65 -104.74 -0.59 -3.67 16 17 C 0.19 2.57 7.37 -38.61 -0.28 2.28 16 18 F -0.11 -1.61 16.93 2.25 0.04 -1.58 16 19 C -0.21 -1.98 10.09 -39.43 -0.40 -2.37 16 20 C 0.15 1.40 11.16 -17.51 -0.20 1.20 16 21 N -0.48 -6.27 10.33 -10.05 -0.10 -6.38 16 22 C 0.23 3.48 7.31 -17.01 -0.12 3.36 16 23 Cl 0.01 0.11 28.20 -51.86 -1.46 -1.35 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.84 5.65 -51.93 -0.29 0.54 16 26 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 27 H 0.10 2.69 5.95 -51.93 -0.31 2.39 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.39 7.25 8.52 -40.82 -0.35 6.90 16 31 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -30.13 297.29 -6.66 -36.79 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -2.98 Total: 3.24 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.03 Total: -0.02 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.24 Total: -44.71 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.46 Total: -1.35 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.13 -6.66 -36.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519877243.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.874 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds