Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00415 * 3 2 1 14 14 C 1.34778 * 119.99951 * 274.99836 * 13 3 2 15 15 O 1.21578 * 119.99841 * 359.97438 * 14 13 3 16 16 C 1.47615 * 120.00333 * 179.97438 * 14 13 3 17 17 C 1.40334 * 120.59711 * 270.00125 * 16 14 13 18 18 F 1.35103 * 120.88086 * 0.02562 * 17 16 14 19 19 C 1.38744 * 118.23666 * 179.97438 * 17 16 14 20 20 C 1.38147 * 119.30924 * 0.02562 * 19 17 16 21 21 N 1.32010 * 121.15622 * 359.97438 * 20 19 17 22 22 C 1.31814 * 121.94176 * 359.74678 * 21 20 19 23 23 Cl 1.73602 * 119.72341 * 180.29073 * 22 21 20 24 24 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 26 26 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 27 27 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 28 28 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 29 29 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 30 30 H 0.96995 * 120.00444 * 95.00053 * 13 3 2 31 31 H 1.07999 * 120.34910 * 180.02562 * 19 17 16 32 32 H 1.07996 * 119.42288 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5539 -0.3519 -0.7600 11 1 6.3834 0.9216 -2.8167 12 1 6.5576 2.0720 -0.6891 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6326 0.4319 16 6 0.0445 3.3238 2.6286 17 6 -0.5927 2.5978 3.6465 18 9 -0.8619 1.2825 3.4959 19 6 -0.9380 3.2664 4.8122 20 6 -0.6469 4.6116 4.9318 21 7 -0.0465 5.2697 3.9575 22 6 0.3072 4.6806 2.8326 23 17 1.1008 5.6000 1.5921 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8292 -0.0609 -2.9501 30 1 2.2720 2.1231 1.9977 31 1 -1.4292 2.7408 5.6177 32 1 -0.9144 5.1338 5.8384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519877243.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -76.242606 kcal Electronic energy + Delta-G solvation = -20548.380452 eV Core-core repulsion = 17062.533734 eV Total energy + Delta-G solvation = -3485.846718 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.37681 -41.62882 -40.31081 -37.90721 -37.02531 -34.45025 -33.64086 -32.93015 -32.17066 -29.02371 -26.14079 -24.84619 -24.81308 -22.47503 -21.34436 -19.73733 -19.15913 -18.91754 -17.83305 -17.50394 -16.99883 -16.50593 -16.38938 -15.97504 -15.65189 -15.44600 -15.30243 -14.94346 -14.62818 -13.97708 -13.51034 -13.25480 -13.17271 -12.94918 -12.90941 -12.68543 -12.52368 -12.21410 -12.12741 -11.63748 -11.40626 -11.10550 -10.94671 -10.77543 -10.55314 -10.31399 -9.78727 -8.17570 -6.34752 -0.59191 -0.38428 0.48257 1.42546 1.44968 1.45616 1.55283 2.13322 2.26337 2.45206 2.59691 3.12073 3.33036 3.43752 3.60059 3.80673 4.14336 4.43198 4.45715 4.53099 4.65981 4.71332 5.02239 5.21236 5.21882 5.38460 5.45010 5.56492 5.73112 5.84117 6.12171 6.36590 6.69347 6.75807 7.21920 7.39588 8.87981 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.005690 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.650638 B = 4919.908764 C = 5638.959189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.686 5.686 14 C 0.556 3.444 15 O -0.564 6.564 16 C -0.215 4.215 17 C 0.171 3.829 18 F -0.119 7.119 19 C -0.176 4.176 20 C 0.170 3.830 21 N -0.493 5.493 22 C 0.218 3.782 23 Cl -0.017 7.017 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.027 0.973 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.401 0.599 31 H 0.208 0.792 32 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 6.177 17.658 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.334 5.334 14 C 0.340 3.660 15 O -0.444 6.444 16 C -0.223 4.223 17 C 0.144 3.856 18 F -0.098 7.098 19 C -0.196 4.196 20 C 0.014 3.986 21 N -0.205 5.205 22 C 0.054 3.946 23 Cl 0.012 6.988 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.236 0.764 31 H 0.225 0.775 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.892 6.957 16.761 19.412 hybrid contribution 1.000 -1.148 -0.829 1.733 sum -5.892 5.809 15.932 17.953 Atomic orbital electron populations 1.21702 0.97089 0.99368 1.00146 1.21793 0.93648 0.98938 1.01564 1.18487 0.93979 0.89206 0.80624 0.97811 1.21504 0.91077 1.39164 1.06816 0.91167 1.25717 1.03196 0.94295 0.94915 1.70040 1.37031 1.38188 1.09843 0.85397 0.79211 0.78854 0.77206 1.19579 1.21161 1.19085 1.46275 1.14458 1.54657 1.17971 1.17975 0.82750 0.78653 0.86646 1.90783 1.52427 1.60541 1.40667 1.20812 1.08647 0.95327 0.97490 1.18166 0.95136 0.78409 0.93907 1.91603 1.90831 1.31512 1.95823 1.22751 1.02953 0.96839 0.97078 1.23738 0.88015 0.90322 0.96502 1.67251 1.13443 1.39793 1.00014 1.21435 0.95054 0.86894 0.91200 1.98464 1.76946 1.74176 1.49220 0.93317 0.94148 0.95362 0.90527 0.93991 0.92500 0.76429 0.77528 0.74848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.51 71.98 0.61 -5.17 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.46 2.24 44.25 0.10 14.56 16 4 H 0.00 0.24 7.58 -2.39 -0.02 0.23 16 5 C -0.55 -29.01 8.73 25.60 0.22 -28.78 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -51.97 11.30 21.45 0.24 -51.73 16 9 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 13 N -0.69 -29.50 5.02 -449.20 -2.25 -31.75 16 14 C 0.56 23.23 4.61 86.72 0.40 23.63 16 15 O -0.56 -27.99 14.24 -3.96 -0.06 -28.04 16 16 C -0.21 -6.95 5.65 -19.94 -0.11 -7.07 16 17 C 0.17 4.33 7.37 22.90 0.17 4.50 16 18 F -0.12 -3.40 16.93 44.97 0.76 -2.64 16 19 C -0.18 -2.44 10.09 22.37 0.23 -2.21 16 20 C 0.17 2.22 11.16 84.64 0.94 3.16 16 21 N -0.49 -11.32 10.33 -185.70 -1.92 -13.24 16 22 C 0.22 6.51 7.31 85.05 0.62 7.13 16 23 Cl -0.02 -0.55 28.20 -2.72 -0.08 -0.63 16 24 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.04 1.81 5.65 -2.39 -0.01 1.80 16 26 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 27 H 0.08 4.22 5.95 -2.39 -0.01 4.21 16 28 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.40 15.18 8.52 -92.71 -0.79 14.39 16 31 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.24 0.44 8.06 -2.91 -0.02 0.41 16 Total: -1.00 -69.93 297.29 2.91 -67.02 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.39 Total: 11.48 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 3.80 Total: 5.41 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -3.93 Total: -96.72 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.06 Total: -28.04 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.76 Total: -2.64 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -69.93 2.91 -67.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519877243.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.222 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds