Wall clock time and date at job start Tue Mar 31 2020 05:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 119.99709 * 2 1 4 4 H 1.48505 * 109.46779 * 269.99612 * 3 2 1 5 5 H 1.48499 * 109.47206 * 29.99467 * 3 2 1 6 6 H 1.48496 * 109.47165 * 149.99780 * 3 2 1 7 7 C 1.38950 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00177 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99519 * 0.02562 * 7 2 1 10 10 C 1.34785 * 119.99535 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00174 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99778 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47029 * 179.97438 * 12 10 9 14 14 C 1.39937 * 119.99543 * 179.97438 * 13 12 10 15 15 C 1.38861 * 120.01324 * 179.97438 * 14 13 12 16 16 C 1.38113 * 119.98022 * 180.02562 * 15 14 13 17 17 C 1.38704 * 120.01645 * 0.02562 * 16 15 14 18 18 O 1.36004 * 119.97592 * 179.97438 * 17 16 15 19 19 C 1.42905 * 116.99566 * 180.02562 * 18 17 16 20 20 F 1.39897 * 109.46886 * 299.99663 * 19 18 17 21 21 F 1.39898 * 109.47456 * 59.99881 * 19 18 17 22 22 C 1.38697 * 120.03774 * 0.23666 * 17 16 15 23 23 C 1.38111 * 120.02159 * 359.48438 * 22 17 16 24 24 H 0.96995 * 120.00360 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00402 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47174 * 59.99899 * 12 10 9 27 27 H 1.09004 * 109.47274 * 300.00305 * 12 10 9 28 28 H 0.96994 * 119.99552 * 0.02562 * 13 12 10 29 29 H 1.08000 * 120.01364 * 0.02562 * 15 14 13 30 30 H 1.07997 * 119.99421 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.47103 * 180.02562 * 19 18 17 32 32 H 1.07998 * 119.98783 * 179.72181 * 22 17 16 33 33 H 1.07999 * 120.00964 * 180.25449 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5456 1.4404 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2441 -4.8629 0.0000 13 7 2.1962 -5.9764 -0.0005 14 6 1.7297 -7.2957 -0.0006 15 6 2.6318 -8.3514 -0.0016 16 6 2.1706 -9.6533 -0.0022 17 6 0.8069 -9.9063 -0.0023 18 8 0.3537 -11.1886 -0.0034 19 6 -1.0631 -11.3759 -0.0040 20 9 -1.6121 -10.7841 1.1385 21 9 -1.6115 -10.7824 -1.1460 22 6 -0.0948 -8.8524 -0.0068 23 6 0.3646 -7.5500 -0.0004 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3906 0.0005 26 1 0.6178 -4.9205 -0.8902 27 1 0.6170 -4.9209 0.8897 28 1 3.1497 -5.7990 -0.0001 29 1 3.6937 -8.1546 -0.0019 30 1 2.8720 -10.4745 -0.0026 31 1 -1.2886 -12.4423 -0.0044 32 1 -1.1565 -9.0504 -0.0114 33 1 -0.3377 -6.7295 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036905634.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:10 Heat of formation + Delta-G solvation = -153.863396 kcal Electronic energy + Delta-G solvation = -21419.142493 eV Core-core repulsion = 17501.593509 eV Total energy + Delta-G solvation = -3917.548983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.49981 -47.49505 -39.96371 -38.62588 -37.63469 -34.68132 -33.87638 -31.42304 -30.98750 -29.42111 -26.95659 -25.69986 -24.43623 -22.83056 -21.53452 -19.52602 -19.03766 -18.45576 -18.05234 -18.00097 -17.18380 -16.02215 -15.67524 -15.39752 -14.87664 -14.60581 -14.56132 -14.20008 -14.04655 -13.99073 -13.81201 -13.60623 -13.43443 -13.03360 -12.80839 -12.76193 -12.19459 -11.93993 -11.74758 -11.62691 -11.14415 -10.81663 -10.47746 -10.33540 -9.68170 -9.59503 -8.98081 -8.65094 -8.12822 -7.06245 -6.54116 -3.96024 1.38350 1.61418 2.51736 3.10046 3.20512 3.25653 3.31880 3.63024 3.70690 3.85605 4.11120 4.12211 4.47647 4.82573 4.86132 4.90891 5.13958 5.27077 5.37076 5.56749 5.68976 5.86986 5.90595 6.04303 6.10617 6.32394 6.41094 6.57401 7.04147 7.43749 7.49001 7.90434 8.06866 8.43068 9.02597 9.36554 9.84834 10.62877 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.036202 B = 0.002806 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.254778 B = 9975.604877 C =10569.065451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.429 3.571 11 O -0.595 6.595 12 C 0.112 3.888 13 N -0.724 5.724 14 C 0.211 3.789 15 C -0.169 4.169 16 C -0.080 4.080 17 C 0.026 3.974 18 O -0.325 6.325 19 C 0.411 3.589 20 F -0.202 7.202 21 F -0.202 7.202 22 C -0.134 4.134 23 C -0.169 4.169 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.412 0.588 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.176 0.824 32 H 0.129 0.871 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.827 -20.889 -0.003 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.186 5.186 10 C 0.215 3.785 11 O -0.481 6.481 12 C -0.016 4.016 13 N -0.355 5.355 14 C 0.106 3.894 15 C -0.192 4.192 16 C -0.100 4.100 17 C -0.018 4.018 18 O -0.243 6.243 19 C 0.321 3.679 20 F -0.184 7.184 21 F -0.184 7.184 22 C -0.153 4.153 23 C -0.192 4.192 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.250 0.750 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.192 0.808 32 H 0.146 0.854 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.219 -20.650 0.002 20.899 hybrid contribution -0.302 1.173 -0.011 1.211 sum -3.521 -19.477 -0.009 19.793 Atomic orbital electron populations 1.69605 1.06010 1.28537 1.49464 1.25316 0.95668 0.99922 0.96777 0.85815 0.79253 0.80477 0.78517 1.20245 1.20769 1.19307 1.19728 0.93469 0.82025 1.48216 0.87719 1.41802 1.09396 1.04504 1.62864 1.19726 0.88330 0.84937 0.85514 1.90501 1.13794 1.86772 1.57028 1.20951 0.92212 0.86553 1.01932 1.44541 1.09662 1.00856 1.80451 1.17889 0.92686 0.84873 0.93984 1.20407 0.99230 0.90569 1.09033 1.20065 0.91850 0.96640 1.01399 1.18503 0.93651 0.81514 1.08159 1.86551 1.21174 1.26858 1.89705 1.23251 0.77266 0.95609 0.71817 1.93093 1.85940 1.87149 1.52174 1.93092 1.85967 1.87069 1.52224 1.21220 0.99141 0.92476 1.02489 1.20498 0.93794 0.96513 1.08436 0.91589 0.77127 0.90661 0.90658 0.74962 0.85141 0.85220 0.80801 0.85365 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.72 13.05 55.50 0.72 -23.00 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 10 C 0.43 9.78 7.85 -10.98 -0.09 9.69 16 11 O -0.59 -15.45 15.24 5.55 0.08 -15.37 16 12 C 0.11 1.95 5.39 -5.19 -0.03 1.92 16 13 N -0.72 -11.96 5.71 -59.76 -0.34 -12.30 16 14 C 0.21 3.14 6.66 -83.70 -0.56 2.59 16 15 C -0.17 -2.23 9.89 -39.40 -0.39 -2.62 16 16 C -0.08 -0.99 9.98 -39.45 -0.39 -1.38 16 17 C 0.03 0.33 6.48 -39.24 -0.25 0.08 16 18 O -0.32 -3.57 10.43 -19.75 -0.21 -3.77 16 19 C 0.41 3.37 5.98 101.05 0.60 3.97 16 20 F -0.20 -2.03 15.59 2.25 0.04 -1.99 16 21 F -0.20 -2.03 15.56 2.25 0.04 -1.99 16 22 C -0.13 -1.80 8.25 -39.46 -0.33 -2.13 16 23 C -0.17 -2.41 9.31 -39.40 -0.37 -2.77 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.40 9.20 7.90 -40.82 -0.32 8.88 16 26 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 27 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 28 H 0.41 7.17 7.45 -40.82 -0.30 6.86 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.18 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.13 1.61 5.09 -52.49 -0.27 1.35 16 33 H 0.13 1.70 6.73 -52.49 -0.35 1.35 16 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -31.00 299.52 -5.13 -36.13 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -2.85 Total: 14.37 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.04 Total: 1.50 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.32 Total: -48.87 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.12 Total: -19.14 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.07 Total: -3.99 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.00 -5.13 -36.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036905634.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.734 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds