Wall clock time and date at job start Tue Mar 31 2020 05:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86806 * 119.99753 * 2 1 4 4 H 1.48502 * 109.47315 * 269.99994 * 3 2 1 5 5 H 1.48511 * 109.46886 * 30.00106 * 3 2 1 6 6 H 1.48498 * 109.47332 * 149.99757 * 3 2 1 7 7 C 1.38944 * 120.00622 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00644 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99672 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00245 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99956 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00231 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.47213 * 180.02562 * 12 10 9 14 14 C 1.39959 * 120.00090 * 180.02562 * 13 12 10 15 15 C 1.38729 * 120.09002 * 0.02562 * 14 13 12 16 16 C 1.38217 * 119.97977 * 179.97438 * 15 14 13 17 17 C 1.38255 * 120.16301 * 0.02562 * 16 15 14 18 18 C 1.38285 * 120.17880 * 359.97438 * 17 16 15 19 19 C 1.38508 * 120.01969 * 0.02562 * 18 17 16 20 20 O 1.36004 * 120.08172 * 180.02562 * 19 18 17 21 21 C 1.42902 * 117.00364 * 359.97438 * 20 19 18 22 22 F 1.39904 * 109.47327 * 300.00431 * 21 20 19 23 23 F 1.39904 * 109.46864 * 59.99619 * 21 20 19 24 24 H 0.97007 * 120.00473 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99842 * 0.02562 * 9 7 2 26 26 H 1.09003 * 109.46959 * 60.00710 * 12 10 9 27 27 H 1.08996 * 109.47334 * 300.00211 * 12 10 9 28 28 H 0.96998 * 119.99638 * 0.02562 * 13 12 10 29 29 H 1.07998 * 120.01018 * 359.96195 * 15 14 13 30 30 H 1.07994 * 119.92216 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.91586 * 179.71985 * 17 16 15 32 32 H 1.08007 * 119.99254 * 179.97438 * 18 17 16 33 33 H 1.08996 * 109.47795 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4453 2.6528 0.7001 6 1 3.5456 1.4404 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3905 -0.0016 10 6 1.9974 -3.5577 -0.0026 11 8 3.2103 -3.5577 -0.0022 12 6 1.2439 -4.8629 -0.0032 13 7 2.1960 -5.9764 -0.0037 14 6 1.7295 -7.2959 -0.0049 15 6 0.3660 -7.5517 -0.0060 16 6 -0.0921 -8.8557 -0.0077 17 6 0.8054 -9.9073 -0.0076 18 6 2.1659 -9.6601 -0.0065 19 6 2.6333 -8.3562 -0.0048 20 8 3.9711 -8.1116 -0.0042 21 6 4.8384 -9.2473 -0.0047 22 9 4.5969 -10.0192 1.1369 23 9 4.5976 -10.0174 -1.1476 24 1 -0.4851 0.8401 0.0004 25 1 0.3535 -2.3906 -0.0024 26 1 0.6170 -4.9201 -0.8931 27 1 0.6176 -4.9213 0.8869 28 1 3.1496 -5.7990 -0.0033 29 1 -0.3373 -6.7320 -0.0055 30 1 -1.1538 -9.0537 -0.0090 31 1 0.4430 -10.9247 -0.0044 32 1 2.8644 -10.4839 -0.0060 33 1 5.8757 -8.9125 -0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036906507.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:12 Heat of formation + Delta-G solvation = -174.953463 kcal Electronic energy + Delta-G solvation = -21884.441122 eV Core-core repulsion = 17965.977605 eV Total energy + Delta-G solvation = -3918.463517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.27516 -48.27013 -41.13984 -40.19634 -38.40933 -36.48458 -35.77098 -33.37978 -31.24983 -30.95501 -28.19316 -26.97200 -26.21415 -23.43233 -22.83094 -21.20721 -20.13790 -19.88636 -19.22356 -18.84975 -18.23840 -17.21800 -17.12205 -16.69192 -16.39439 -16.21737 -15.78021 -15.59884 -15.28703 -14.95615 -14.88606 -14.71938 -14.62835 -14.08551 -13.89633 -13.84617 -13.54623 -13.31728 -12.99265 -12.82147 -12.47591 -12.44413 -12.13602 -11.92490 -11.58206 -11.12126 -10.54044 -10.09487 -9.59870 -8.51657 -8.25780 -6.01350 0.38819 0.61565 1.35876 1.42061 1.54244 1.70495 1.92284 2.20019 2.41839 2.57387 2.85884 3.15726 3.17179 3.55228 3.74270 3.86427 4.08654 4.17277 4.28686 4.39768 4.49065 4.51254 4.58502 4.81119 5.15147 5.37341 5.40082 5.64679 5.70979 5.83588 5.96815 6.38186 6.51524 6.73459 7.04594 7.45023 7.97638 8.65180 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.003395 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.363275 B = 8244.932927 C = 9073.503164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.081 0.919 9 N -0.559 5.559 10 C 0.429 3.571 11 O -0.631 6.631 12 C 0.129 3.871 13 N -0.734 5.734 14 C 0.194 3.806 15 C -0.183 4.183 16 C -0.087 4.087 17 C -0.152 4.152 18 C -0.151 4.151 19 C 0.003 3.997 20 O -0.340 6.340 21 C 0.409 3.591 22 F -0.209 7.209 23 F -0.209 7.209 24 H 0.280 0.720 25 H 0.400 0.600 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.404 0.596 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.134 0.866 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 -18.904 -0.019 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.099 0.901 9 N -0.195 5.195 10 C 0.216 3.784 11 O -0.519 6.519 12 C 0.002 3.998 13 N -0.366 5.366 14 C 0.090 3.910 15 C -0.206 4.206 16 C -0.106 4.106 17 C -0.172 4.172 18 C -0.171 4.171 19 C -0.043 4.043 20 O -0.258 6.258 21 C 0.319 3.681 22 F -0.191 7.191 23 F -0.191 7.191 24 H 0.090 0.910 25 H 0.235 0.765 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.241 0.759 29 H 0.162 0.838 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.358 -18.432 -0.013 18.482 hybrid contribution 0.360 0.703 -0.008 0.790 sum 1.719 -17.729 -0.021 17.812 Atomic orbital electron populations 1.69657 1.06828 1.29614 1.49314 1.26050 0.96540 1.02431 0.95776 0.84918 0.77916 0.76732 0.78717 1.19566 1.19408 1.19762 1.19688 0.92830 0.83804 1.50542 0.90131 1.41816 1.09554 1.04451 1.63657 1.20660 0.88186 0.86288 0.83267 1.90482 1.15829 1.87644 1.57910 1.20844 0.91595 0.83458 1.03946 1.44380 1.09181 1.01180 1.81854 1.17519 0.92634 0.82554 0.98251 1.20887 0.91679 0.99252 1.08805 1.21247 1.01175 0.90919 0.97212 1.21055 0.91454 1.00621 1.04043 1.21426 0.98623 0.93535 1.03472 1.18516 0.81499 0.93808 1.10519 1.86557 1.15449 1.34254 1.89590 1.24053 0.97191 0.75807 0.71014 1.93060 1.95893 1.77411 1.52717 1.93060 1.95900 1.77496 1.52618 0.91025 0.76499 0.88398 0.88411 0.75917 0.83779 0.82634 0.83323 0.84816 0.76016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.86 13.05 21.66 0.28 -47.57 16 2 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 3 Si 0.99 41.83 29.55 68.60 2.03 43.86 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.34 -18.84 9.68 84.04 0.81 -18.02 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.56 -27.86 5.29 -306.99 -1.62 -29.49 16 10 C 0.43 20.04 7.85 87.66 0.69 20.73 16 11 O -0.63 -34.36 15.24 -3.08 -0.05 -34.41 16 12 C 0.13 4.47 5.40 85.63 0.46 4.93 16 13 N -0.73 -25.81 5.70 -342.68 -1.95 -27.76 16 14 C 0.19 6.00 6.67 38.22 0.25 6.26 16 15 C -0.18 -4.63 9.31 22.38 0.21 -4.42 16 16 C -0.09 -1.79 10.04 22.27 0.22 -1.57 16 17 C -0.15 -3.21 10.04 22.28 0.22 -2.98 16 18 C -0.15 -3.84 8.26 22.35 0.18 -3.65 16 19 C 0.00 0.09 6.50 22.59 0.15 0.24 16 20 O -0.34 -9.60 9.68 -93.59 -0.91 -10.50 16 21 C 0.41 7.97 5.98 113.37 0.68 8.64 16 22 F -0.21 -4.50 15.59 44.97 0.70 -3.80 16 23 F -0.21 -4.50 15.59 44.97 0.70 -3.80 16 24 H 0.28 13.70 8.31 -92.70 -0.77 12.93 16 25 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 26 H 0.10 2.94 7.95 -2.39 -0.02 2.92 16 27 H 0.10 2.94 7.95 -2.39 -0.02 2.92 16 28 H 0.40 15.99 6.80 -92.71 -0.63 15.36 16 29 H 0.14 3.17 6.74 -2.91 -0.02 3.15 16 30 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.13 3.13 5.10 -2.91 -0.01 3.12 16 33 H 0.22 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -68.26 298.39 3.36 -64.90 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.17 Total: 38.33 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 4.35 Total: 10.25 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -3.29 Total: -104.82 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.95 Total: -44.91 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 1.40 Total: -7.60 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -68.26 3.36 -64.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036906507.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.052 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds