Wall clock time and date at job start Tue Mar 31 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99722 * 2 1 4 4 H 1.48504 * 109.46845 * 240.00388 * 3 2 1 5 5 H 1.48499 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46928 * 120.00553 * 3 2 1 7 7 C 1.37870 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99828 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00220 * 179.97438 * 10 9 7 12 12 S 1.71205 * 119.99847 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00501 * 179.97438 * 11 10 9 14 14 C 1.39567 * 120.00630 * 185.47277 * 13 11 10 15 15 C 1.37841 * 120.29599 * 44.46632 * 14 13 11 16 16 C 1.39157 * 120.74642 * 179.97438 * 15 14 13 17 17 C 1.36163 * 121.08957 * 0.06296 * 16 15 14 18 18 C 1.40519 * 119.95435 * 359.95525 * 17 16 15 19 19 C 1.40570 * 121.20514 * 180.02562 * 18 17 16 20 20 C 1.36097 * 119.65888 * 179.97438 * 19 18 17 21 21 C 1.39349 * 120.98079 * 0.02562 * 20 19 18 22 22 C 1.36150 * 120.95696 * 359.97438 * 21 20 19 23 23 C 1.40370 * 119.67556 * 359.97438 * 22 21 20 24 24 H 0.96994 * 120.00311 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47230 * 60.00532 * 9 7 2 26 26 H 1.08998 * 109.47380 * 299.99803 * 9 7 2 27 27 H 0.97005 * 119.99808 * 359.97438 * 10 9 7 28 28 H 0.97003 * 119.99997 * 5.47598 * 13 11 10 29 29 H 1.07999 * 119.62531 * 0.02562 * 15 14 13 30 30 H 1.08004 * 119.45103 * 180.02562 * 16 15 14 31 31 H 1.07999 * 120.02771 * 180.23334 * 17 16 15 32 32 H 1.08000 * 120.17115 * 359.96117 * 19 18 17 33 33 H 1.08003 * 119.51136 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.52224 * 179.97438 * 21 20 19 35 35 H 1.08003 * 120.16717 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 16 0.0708 -5.1962 0.0000 13 7 2.6298 -5.9077 -0.0005 14 6 2.1688 -7.2200 -0.1153 15 6 1.1996 -7.5380 -1.0423 16 6 0.7335 -8.8434 -1.1651 17 6 1.2189 -9.8405 -0.3749 18 6 2.2075 -9.5583 0.5830 19 6 2.7274 -10.5674 1.4121 20 6 3.6846 -10.2590 2.3290 21 6 4.1588 -8.9553 2.4601 22 6 3.6781 -7.9528 1.6742 23 6 2.6910 -8.2333 0.7164 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 3.1569 -3.4353 -0.0009 28 1 3.5807 -5.7329 0.0789 29 1 0.7979 -6.7654 -1.6812 30 1 -0.0261 -9.0693 -1.8988 31 1 0.8476 -10.8484 -0.4874 32 1 2.3689 -11.5822 1.3220 33 1 4.0827 -11.0363 2.9645 34 1 4.9186 -8.7368 3.1959 35 1 4.0550 -6.9470 1.7864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038437312.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:35 Heat of formation + Delta-G solvation = 61.148177 kcal Electronic energy + Delta-G solvation = -18896.849349 eV Core-core repulsion = 15985.606368 eV Total energy + Delta-G solvation = -2911.242981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66864 -38.47549 -36.45762 -35.05902 -32.86177 -31.54857 -30.33585 -28.78883 -27.29872 -24.14922 -23.39366 -22.94439 -22.45178 -21.43074 -18.56175 -18.12427 -17.31210 -16.45917 -16.13627 -15.84458 -15.02293 -14.80554 -14.73393 -14.00594 -13.98397 -13.59969 -13.56009 -13.38196 -12.75095 -12.23211 -12.10144 -11.96703 -11.26885 -11.15407 -11.05267 -11.04792 -10.88330 -10.57981 -10.39777 -10.01338 -9.63678 -9.07673 -8.63173 -8.51287 -7.67657 -7.19490 -6.53206 -6.27876 -4.39615 0.46926 1.05652 1.73460 2.18310 2.50492 3.03243 3.10703 3.17135 3.23213 3.24327 4.04744 4.12623 4.28106 4.60800 4.78126 4.83214 4.99365 5.06949 5.14917 5.28922 5.35999 5.43075 5.65300 5.84794 5.91943 6.10702 6.30241 6.34852 6.38321 6.44820 6.65270 6.69346 6.82704 7.02411 7.24630 7.31203 7.37150 7.53457 7.77753 8.09299 8.64024 9.26432 10.80097 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.003634 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.203242 B = 7703.523063 C = 8391.423131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.560 4.560 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.642 5.642 11 C 0.546 3.454 12 S -0.643 6.643 13 N -0.649 5.649 14 C 0.147 3.853 15 C -0.066 4.066 16 C -0.098 4.098 17 C -0.115 4.115 18 C -0.047 4.047 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.048 4.048 24 H 0.270 0.730 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.391 0.609 28 H 0.401 0.599 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -18.968 0.665 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.598 4.598 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.262 5.262 11 C 0.185 3.815 12 S -0.515 6.515 13 N -0.278 5.278 14 C 0.052 3.948 15 C -0.089 4.089 16 C -0.118 4.118 17 C -0.134 4.134 18 C -0.048 4.048 19 C -0.119 4.119 20 C -0.143 4.143 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.051 4.051 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.226 0.774 28 H 0.238 0.762 29 H 0.161 0.839 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.981 -18.782 0.666 20.418 hybrid contribution 2.141 1.398 0.237 2.568 sum 10.121 -17.384 0.903 20.136 Atomic orbital electron populations 1.69963 1.06010 1.27806 1.47242 1.24895 0.94943 0.99370 0.94299 0.86439 0.79438 0.82139 0.78713 1.20004 1.20817 1.20024 1.21085 0.93136 0.90199 1.55406 0.92019 1.19741 0.87430 0.79427 1.00394 1.46078 1.12006 1.04051 1.64090 1.22405 0.95100 0.82380 0.81596 1.93237 0.93393 1.90270 1.74599 1.42026 1.08530 1.03558 1.73663 1.17117 0.99827 0.81434 0.96391 1.21344 0.94671 0.96707 0.96180 1.20692 0.99585 0.91981 0.99518 1.20965 0.96906 0.99535 0.96012 1.17835 0.97367 0.92162 0.97446 1.20991 0.96974 0.98436 0.95496 1.20781 0.97965 0.96558 0.99000 1.20768 1.00259 0.93013 0.99512 1.20828 0.96695 0.99193 0.95962 1.17836 0.98371 0.92840 0.96018 0.92038 0.92880 0.92978 0.77396 0.76158 0.83898 0.85504 0.85661 0.85605 0.86213 0.86207 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.91 13.29 55.43 0.74 -24.18 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 7 C -0.56 -14.40 9.28 -34.44 -0.32 -14.72 16 8 H 0.06 1.47 7.60 -52.48 -0.40 1.07 16 9 C 0.25 6.19 4.88 -5.19 -0.03 6.16 16 10 N -0.64 -12.41 5.55 -63.21 -0.35 -12.77 16 11 C 0.55 10.31 7.73 -86.93 -0.67 9.64 16 12 S -0.64 -14.83 25.29 -107.50 -2.72 -17.55 16 13 N -0.65 -9.51 4.77 -11.18 -0.05 -9.56 16 14 C 0.15 2.20 5.85 -83.40 -0.49 1.71 16 15 C -0.07 -1.00 7.86 -39.39 -0.31 -1.31 16 16 C -0.10 -1.23 9.94 -39.99 -0.40 -1.63 16 17 C -0.12 -1.31 9.75 -39.47 -0.38 -1.70 16 18 C -0.05 -0.58 5.74 -106.85 -0.61 -1.20 16 19 C -0.10 -1.03 9.77 -39.47 -0.39 -1.41 16 20 C -0.12 -1.20 9.95 -39.94 -0.40 -1.59 16 21 C -0.12 -1.21 9.95 -39.92 -0.40 -1.60 16 22 C -0.11 -1.29 9.48 -39.53 -0.37 -1.67 16 23 C -0.05 -0.66 5.75 -106.69 -0.61 -1.27 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.05 1.47 7.99 -51.93 -0.42 1.05 16 26 H 0.05 1.46 7.99 -51.93 -0.41 1.04 16 27 H 0.39 6.28 8.34 -40.82 -0.34 5.94 16 28 H 0.40 4.50 8.09 -40.82 -0.33 4.17 16 29 H 0.14 2.42 6.50 -52.49 -0.34 2.08 16 30 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.26 7.12 -52.48 -0.37 0.89 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -31.92 313.37 -12.02 -43.95 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -3.86 Total: 9.08 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -5.48 Total: -8.81 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.33 Total: -46.50 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -14.83 SS G_CDS: -2.72 Total: -17.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.92 -12.02 -43.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038437312.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.097 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds