Wall clock time and date at job start Tue Mar 31 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99722 * 2 1 4 4 H 1.48504 * 109.46845 * 240.00388 * 3 2 1 5 5 H 1.48499 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46928 * 120.00553 * 3 2 1 7 7 C 1.37870 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99828 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00220 * 179.97438 * 10 9 7 12 12 S 1.71205 * 119.99847 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00501 * 179.97438 * 11 10 9 14 14 C 1.39567 * 120.00630 * 185.47277 * 13 11 10 15 15 C 1.37841 * 120.29599 * 44.46632 * 14 13 11 16 16 C 1.39157 * 120.74642 * 179.97438 * 15 14 13 17 17 C 1.36163 * 121.08957 * 0.06296 * 16 15 14 18 18 C 1.40519 * 119.95435 * 359.95525 * 17 16 15 19 19 C 1.40570 * 121.20514 * 180.02562 * 18 17 16 20 20 C 1.36097 * 119.65888 * 179.97438 * 19 18 17 21 21 C 1.39349 * 120.98079 * 0.02562 * 20 19 18 22 22 C 1.36150 * 120.95696 * 359.97438 * 21 20 19 23 23 C 1.40370 * 119.67556 * 359.97438 * 22 21 20 24 24 H 0.96994 * 120.00311 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47230 * 60.00532 * 9 7 2 26 26 H 1.08998 * 109.47380 * 299.99803 * 9 7 2 27 27 H 0.97005 * 119.99808 * 359.97438 * 10 9 7 28 28 H 0.97003 * 119.99997 * 5.47598 * 13 11 10 29 29 H 1.07999 * 119.62531 * 0.02562 * 15 14 13 30 30 H 1.08004 * 119.45103 * 180.02562 * 16 15 14 31 31 H 1.07999 * 120.02771 * 180.23334 * 17 16 15 32 32 H 1.08000 * 120.17115 * 359.96117 * 19 18 17 33 33 H 1.08003 * 119.51136 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.52224 * 179.97438 * 21 20 19 35 35 H 1.08003 * 120.16717 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 16 0.0708 -5.1962 0.0000 13 7 2.6298 -5.9077 -0.0005 14 6 2.1688 -7.2200 -0.1153 15 6 1.1996 -7.5380 -1.0423 16 6 0.7335 -8.8434 -1.1651 17 6 1.2189 -9.8405 -0.3749 18 6 2.2075 -9.5583 0.5830 19 6 2.7274 -10.5674 1.4121 20 6 3.6846 -10.2590 2.3290 21 6 4.1588 -8.9553 2.4601 22 6 3.6781 -7.9528 1.6742 23 6 2.6910 -8.2333 0.7164 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 3.1569 -3.4353 -0.0009 28 1 3.5807 -5.7329 0.0789 29 1 0.7979 -6.7654 -1.6812 30 1 -0.0261 -9.0693 -1.8988 31 1 0.8476 -10.8484 -0.4874 32 1 2.3689 -11.5822 1.3220 33 1 4.0827 -11.0363 2.9645 34 1 4.9186 -8.7368 3.1959 35 1 4.0550 -6.9470 1.7864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038437312.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:35 Heat of formation + Delta-G solvation = 42.844827 kcal Electronic energy + Delta-G solvation = -18897.643042 eV Core-core repulsion = 15985.606368 eV Total energy + Delta-G solvation = -2912.036674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70684 -39.83781 -37.62027 -36.39236 -34.73218 -32.64638 -31.25653 -30.07064 -28.93398 -25.68215 -24.69191 -24.25045 -23.69059 -22.53756 -20.10963 -19.27919 -18.38036 -18.06491 -17.50310 -17.03707 -16.60842 -16.27460 -16.01905 -15.39414 -15.19503 -14.77809 -14.69088 -14.34739 -14.20208 -13.68545 -13.48240 -12.99863 -12.93248 -12.73019 -12.37899 -12.27542 -12.17661 -11.95627 -11.87536 -11.60561 -11.20181 -10.72922 -10.13642 -9.60099 -9.07205 -8.78055 -8.33055 -8.16094 -6.51224 -0.51426 0.12887 0.32248 0.83618 1.16540 1.41386 1.45342 1.52695 1.59075 2.15687 2.33424 2.64679 3.02977 3.18269 3.75767 3.91454 3.96678 4.15673 4.31201 4.36237 4.48155 4.51573 4.71667 4.80394 4.96001 5.01599 5.17531 5.18709 5.24342 5.32775 5.39091 5.48521 5.58869 5.66091 5.71158 5.75492 5.89397 6.02684 6.15158 6.42252 6.66162 7.20887 8.78600 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.003634 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.203242 B = 7703.523063 C = 8391.423131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.569 4.569 8 H 0.084 0.916 9 C 0.275 3.725 10 N -0.636 5.636 11 C 0.572 3.428 12 S -0.728 6.728 13 N -0.617 5.617 14 C 0.114 3.886 15 C -0.079 4.079 16 C -0.118 4.118 17 C -0.096 4.096 18 C -0.068 4.068 19 C -0.099 4.099 20 C -0.126 4.126 21 C -0.109 4.109 22 C -0.135 4.135 23 C -0.060 4.060 24 H 0.271 0.729 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.411 0.589 28 H 0.421 0.579 29 H 0.115 0.885 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.410 -20.895 1.694 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.189 4.189 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.607 4.607 8 H 0.102 0.898 9 C 0.153 3.847 10 N -0.259 5.259 11 C 0.208 3.792 12 S -0.602 6.602 13 N -0.245 5.245 14 C 0.020 3.980 15 C -0.101 4.101 16 C -0.137 4.137 17 C -0.115 4.115 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.144 4.144 21 C -0.127 4.127 22 C -0.153 4.153 23 C -0.062 4.062 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.250 0.750 28 H 0.262 0.738 29 H 0.133 0.867 30 H 0.162 0.838 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.050 -20.788 1.692 23.604 hybrid contribution 1.315 1.726 -0.029 2.170 sum 12.365 -19.062 1.663 22.782 Atomic orbital electron populations 1.70132 1.08123 1.28829 1.48716 1.25963 0.95712 1.03591 0.93632 0.85235 0.77947 0.76790 0.79424 1.18704 1.21090 1.18733 1.21510 0.94288 0.90305 1.54556 0.89768 1.19036 0.87545 0.81183 0.96911 1.45504 1.12256 1.03095 1.65092 1.21826 0.93900 0.82939 0.80532 1.93377 0.97758 1.91102 1.77958 1.41824 1.08896 1.02898 1.70925 1.17327 1.01322 0.81305 0.98016 1.21289 0.94993 0.97476 0.96353 1.20887 1.00586 0.91277 1.00920 1.21384 0.95300 1.00681 0.94102 1.18228 0.97965 0.92316 0.98396 1.21373 0.96535 0.99239 0.94550 1.21225 0.97277 0.97014 0.98847 1.21174 0.99777 0.92976 0.98749 1.20989 0.97327 1.00285 0.96706 1.18019 0.98902 0.93041 0.96232 0.92051 0.96650 0.96896 0.74986 0.73776 0.86725 0.83826 0.82062 0.82484 0.82976 0.83729 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.24 13.29 21.44 0.28 -53.96 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.98 41.05 29.54 68.60 2.03 43.07 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.57 -29.45 9.28 25.60 0.24 -29.22 16 8 H 0.08 3.89 7.60 -2.91 -0.02 3.86 16 9 C 0.28 14.28 4.88 85.63 0.42 14.70 16 10 N -0.64 -25.17 5.55 -353.90 -1.97 -27.14 16 11 C 0.57 22.42 7.73 179.06 1.38 23.81 16 12 S -0.73 -35.90 25.29 -56.49 -1.43 -37.33 16 13 N -0.62 -18.27 4.77 -189.30 -0.90 -19.17 16 14 C 0.11 3.46 5.85 38.52 0.23 3.68 16 15 C -0.08 -2.49 7.86 22.40 0.18 -2.32 16 16 C -0.12 -2.94 9.94 22.01 0.22 -2.72 16 17 C -0.10 -1.99 9.75 22.34 0.22 -1.77 16 18 C -0.07 -1.54 5.74 -21.30 -0.12 -1.66 16 19 C -0.10 -1.63 9.77 22.34 0.22 -1.41 16 20 C -0.13 -1.87 9.95 22.04 0.22 -1.65 16 21 C -0.11 -1.87 9.95 22.05 0.22 -1.65 16 22 C -0.13 -2.97 9.48 22.30 0.21 -2.76 16 23 C -0.06 -1.57 5.75 -21.21 -0.12 -1.69 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.02 0.92 7.99 -2.39 -0.02 0.90 16 26 H 0.01 0.78 7.99 -2.39 -0.02 0.76 16 27 H 0.41 12.91 8.34 -92.70 -0.77 12.14 16 28 H 0.42 9.09 8.09 -92.71 -0.75 8.34 16 29 H 0.11 4.24 6.50 -2.91 -0.02 4.22 16 30 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 32 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.12 2.44 7.12 -2.91 -0.02 2.42 16 Total: -1.00 -73.91 313.37 1.59 -72.32 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.39 Total: 25.73 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 3.96 Total: -3.53 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -2.58 Total: -100.27 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: -35.90 SS G_CDS: -1.43 Total: -37.33 kcal Total: -73.91 1.59 -72.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038437312.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.167 kcal (2) G-P(sol) polarization free energy of solvation -73.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds