Wall clock time and date at job start Tue Mar 31 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86796 * 120.00060 * 2 1 4 4 H 1.48497 * 109.47420 * 274.98505 * 3 2 1 5 5 H 1.48506 * 109.47467 * 34.98642 * 3 2 1 6 6 H 1.48500 * 109.47383 * 154.98730 * 3 2 1 7 7 C 1.39916 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00507 * 147.55488 * 7 2 1 9 9 C 1.41132 * 119.99943 * 327.55940 * 7 2 1 10 10 C 1.40886 * 120.16223 * 157.97142 * 9 7 2 11 11 C 1.36350 * 119.83182 * 180.02562 * 10 9 7 12 12 C 1.39521 * 120.16599 * 0.02562 * 11 10 9 13 13 N 1.39114 * 119.83620 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99903 * 37.75869 * 13 12 11 15 15 O 1.21519 * 120.00002 * 356.96736 * 14 13 12 16 16 C 1.48097 * 119.99718 * 176.68663 * 14 13 12 17 17 C 1.39929 * 120.91347 * 359.72448 * 16 14 13 18 18 C 1.38028 * 119.06339 * 179.70526 * 17 16 14 19 19 N 1.31887 * 120.93627 * 0.58053 * 18 17 16 20 20 C 1.31972 * 122.02079 * 359.71869 * 19 18 17 21 21 F 1.35101 * 119.58351 * 180.02562 * 20 19 18 22 22 C 1.38511 * 120.82574 * 359.97228 * 20 19 18 23 23 C 1.39510 * 120.32913 * 0.25038 * 12 11 10 24 24 C 1.36367 * 120.16587 * 359.48894 * 23 12 11 25 25 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.08415 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.91821 * 179.97438 * 11 10 9 28 28 H 0.96999 * 120.00094 * 217.76254 * 13 12 11 29 29 H 1.07998 * 120.46752 * 0.02562 * 17 16 14 30 30 H 1.07994 * 119.53087 * 180.32112 * 18 17 16 31 31 H 1.07997 * 120.50830 * 180.02562 * 22 20 19 32 32 H 1.08002 * 119.92193 * 179.74246 * 23 12 11 33 33 H 1.07994 * 120.08710 * 180.23618 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4968 2.6200 0.8028 6 1 3.5889 1.4120 0.5920 7 6 2.0082 -1.2117 0.0005 8 1 2.9618 -1.2850 -0.5012 9 6 1.4678 -2.3383 0.6567 10 6 1.8861 -3.6348 0.2977 11 6 1.3591 -4.7185 0.9357 12 6 0.4075 -4.5459 1.9413 13 7 -0.1260 -5.6564 2.5874 14 6 0.6595 -6.7153 2.8670 15 8 1.8199 -6.7231 2.5061 16 6 0.1102 -7.8665 3.6195 17 6 -1.2198 -7.8725 4.0542 18 6 -1.6937 -8.9680 4.7473 19 7 -0.9091 -9.9948 5.0111 20 6 0.3526 -10.0286 4.6256 21 9 1.1120 -11.1058 4.9222 22 6 0.9075 -8.9739 3.9197 23 6 -0.0158 -3.2654 2.2983 24 6 0.5062 -2.1718 1.6728 25 1 -0.4850 0.8401 0.0004 26 1 2.6216 -3.7701 -0.4814 27 1 1.6784 -5.7131 0.6613 28 1 -1.0634 -5.6687 2.8365 29 1 -1.8678 -7.0340 3.8459 30 1 -2.7204 -8.9829 5.0818 31 1 1.9405 -9.0071 3.6064 32 1 -0.7558 -3.1396 3.0749 33 1 0.1804 -1.1810 1.9528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041039704.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:08 Heat of formation + Delta-G solvation = -15.975812 kcal Electronic energy + Delta-G solvation = -20568.383456 eV Core-core repulsion = 17087.582952 eV Total energy + Delta-G solvation = -3480.800504 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.23800 -40.71568 -39.26320 -37.31593 -34.69667 -33.47485 -32.76234 -31.17904 -29.67701 -29.12091 -25.92335 -24.28495 -23.83929 -21.85935 -20.99859 -20.12876 -18.52890 -17.60811 -17.41798 -16.92271 -16.32319 -16.06761 -15.88296 -15.29002 -14.81103 -14.68934 -14.09966 -14.02092 -13.71866 -13.45637 -13.10922 -12.74744 -12.42421 -12.20033 -12.08155 -11.59369 -11.22587 -11.04714 -10.63885 -10.41309 -10.24490 -10.14709 -9.87351 -9.64953 -9.36087 -9.22664 -8.83300 -7.66120 -7.27487 -6.99716 -4.37581 0.36447 0.59138 2.48547 2.84699 2.98735 3.00500 3.03198 3.10456 3.19761 3.41680 3.60614 3.81657 4.25668 4.39257 4.50981 4.52683 4.63243 5.13903 5.37212 5.37934 5.57381 5.68341 6.07858 6.23008 6.30741 6.61492 6.81965 6.89441 7.01469 7.16258 7.25926 7.44725 7.54216 7.74295 7.91375 8.09496 8.14685 8.42344 8.53594 8.73321 8.87021 9.91209 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.047518 B = 0.002997 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.108798 B = 9339.333152 C = 9729.485516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.461 4.461 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.225 4.225 11 C -0.061 4.061 12 C -0.034 4.034 13 N -0.630 5.630 14 C 0.535 3.465 15 O -0.518 6.518 16 C -0.045 4.045 17 C -0.158 4.158 18 C 0.135 3.865 19 N -0.506 5.506 20 C 0.305 3.695 21 F -0.109 7.109 22 C -0.141 4.141 23 C -0.096 4.096 24 C -0.172 4.172 25 H 0.285 0.715 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.395 0.605 29 H 0.149 0.851 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.090 0.910 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.261 -9.849 7.055 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.488 4.488 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.245 4.245 11 C -0.081 4.081 12 C -0.126 4.126 13 N -0.272 5.272 14 C 0.321 3.679 15 O -0.395 6.395 16 C -0.056 4.056 17 C -0.179 4.179 18 C -0.022 4.022 19 N -0.221 5.221 20 C 0.151 3.849 21 F -0.088 7.088 22 C -0.163 4.163 23 C -0.116 4.116 24 C -0.192 4.192 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.230 0.770 29 H 0.167 0.833 30 H 0.191 0.809 31 H 0.179 0.821 32 H 0.109 0.891 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.936 -10.444 7.239 13.633 hybrid contribution 0.193 1.232 -0.222 1.267 sum -4.743 -9.212 7.017 12.514 Atomic orbital electron populations 1.69934 1.08132 1.30083 1.30599 1.25974 0.94396 1.01666 0.91456 0.86477 0.81538 0.80610 0.79311 1.19363 1.19807 1.18000 1.19563 1.05388 0.93755 1.30089 0.89833 1.17618 0.89547 0.91864 0.89777 1.20594 1.07144 0.92257 1.04459 1.20294 0.96093 0.98076 0.93641 1.16994 1.08217 0.84528 1.02813 1.42758 1.11912 1.15723 1.56855 1.17987 0.86140 0.82818 0.80989 1.90793 1.16692 1.79553 1.52446 1.20457 0.93743 0.94730 0.96709 1.22448 0.95409 1.00713 0.99306 1.22491 0.99038 0.87033 0.93624 1.66879 1.04254 1.29476 1.21521 1.17981 0.87070 0.84213 0.95599 1.91644 1.72983 1.53022 1.91198 1.21967 1.03115 0.92139 0.99063 1.20151 1.00508 0.91426 0.99542 1.20626 1.02581 0.96685 0.99285 0.90434 0.88583 0.87936 0.77043 0.83305 0.80906 0.82113 0.89139 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.56 11.78 55.55 0.65 -17.91 16 2 C 0.09 2.08 4.77 -17.34 -0.08 2.00 16 3 Si 0.90 17.56 29.66 -169.99 -5.04 12.52 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.46 -11.76 8.94 -37.86 -0.34 -12.10 16 8 H 0.08 2.07 8.02 -52.49 -0.42 1.65 16 9 C 0.11 2.96 5.57 -106.80 -0.60 2.37 16 10 C -0.22 -5.53 9.74 -39.26 -0.38 -5.91 16 11 C -0.06 -1.42 8.59 -39.78 -0.34 -1.76 16 12 C -0.03 -0.71 6.25 -83.60 -0.52 -1.24 16 13 N -0.63 -10.37 5.25 -10.52 -0.06 -10.43 16 14 C 0.53 8.91 7.60 -12.21 -0.09 8.82 16 15 O -0.52 -10.66 14.06 5.35 0.08 -10.59 16 16 C -0.05 -0.57 5.91 -104.67 -0.62 -1.19 16 17 C -0.16 -1.46 9.61 -39.03 -0.38 -1.84 16 18 C 0.13 1.18 11.17 -17.60 -0.20 0.98 16 19 N -0.51 -5.92 10.35 -13.65 -0.14 -6.06 16 20 C 0.30 3.74 8.41 -17.39 -0.15 3.60 16 21 F -0.11 -1.36 17.29 2.25 0.04 -1.32 16 22 C -0.14 -1.76 9.66 -38.93 -0.38 -2.14 16 23 C -0.10 -2.08 9.90 -39.78 -0.39 -2.48 16 24 C -0.17 -4.21 8.74 -39.26 -0.34 -4.55 16 25 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 26 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.10 2.34 6.45 -52.49 -0.34 2.00 16 28 H 0.39 4.89 6.97 -40.82 -0.28 4.60 16 29 H 0.15 0.95 6.54 -52.49 -0.34 0.61 16 30 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.16 1.99 7.74 -52.49 -0.41 1.59 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.11 2.68 6.52 -52.49 -0.34 2.34 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -29.49 299.26 -7.30 -36.79 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -2.54 Total: 7.93 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -4.80 Total: -15.44 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.46 Total: -34.40 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.04 Total: 12.52 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.49 -7.30 -36.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041039704.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.813 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds