Wall clock time and date at job start Tue Mar 31 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86796 * 120.00060 * 2 1 4 4 H 1.48497 * 109.47420 * 274.98505 * 3 2 1 5 5 H 1.48506 * 109.47467 * 34.98642 * 3 2 1 6 6 H 1.48500 * 109.47383 * 154.98730 * 3 2 1 7 7 C 1.39916 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00507 * 147.55488 * 7 2 1 9 9 C 1.41132 * 119.99943 * 327.55940 * 7 2 1 10 10 C 1.40886 * 120.16223 * 157.97142 * 9 7 2 11 11 C 1.36350 * 119.83182 * 180.02562 * 10 9 7 12 12 C 1.39521 * 120.16599 * 0.02562 * 11 10 9 13 13 N 1.39114 * 119.83620 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99903 * 37.75869 * 13 12 11 15 15 O 1.21519 * 120.00002 * 356.96736 * 14 13 12 16 16 C 1.48097 * 119.99718 * 176.68663 * 14 13 12 17 17 C 1.39929 * 120.91347 * 359.72448 * 16 14 13 18 18 C 1.38028 * 119.06339 * 179.70526 * 17 16 14 19 19 N 1.31887 * 120.93627 * 0.58053 * 18 17 16 20 20 C 1.31972 * 122.02079 * 359.71869 * 19 18 17 21 21 F 1.35101 * 119.58351 * 180.02562 * 20 19 18 22 22 C 1.38511 * 120.82574 * 359.97228 * 20 19 18 23 23 C 1.39510 * 120.32913 * 0.25038 * 12 11 10 24 24 C 1.36367 * 120.16587 * 359.48894 * 23 12 11 25 25 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.08415 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.91821 * 179.97438 * 11 10 9 28 28 H 0.96999 * 120.00094 * 217.76254 * 13 12 11 29 29 H 1.07998 * 120.46752 * 0.02562 * 17 16 14 30 30 H 1.07994 * 119.53087 * 180.32112 * 18 17 16 31 31 H 1.07997 * 120.50830 * 180.02562 * 22 20 19 32 32 H 1.08002 * 119.92193 * 179.74246 * 23 12 11 33 33 H 1.07994 * 120.08710 * 180.23618 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4968 2.6200 0.8028 6 1 3.5889 1.4120 0.5920 7 6 2.0082 -1.2117 0.0005 8 1 2.9618 -1.2850 -0.5012 9 6 1.4678 -2.3383 0.6567 10 6 1.8861 -3.6348 0.2977 11 6 1.3591 -4.7185 0.9357 12 6 0.4075 -4.5459 1.9413 13 7 -0.1260 -5.6564 2.5874 14 6 0.6595 -6.7153 2.8670 15 8 1.8199 -6.7231 2.5061 16 6 0.1102 -7.8665 3.6195 17 6 -1.2198 -7.8725 4.0542 18 6 -1.6937 -8.9680 4.7473 19 7 -0.9091 -9.9948 5.0111 20 6 0.3526 -10.0286 4.6256 21 9 1.1120 -11.1058 4.9222 22 6 0.9075 -8.9739 3.9197 23 6 -0.0158 -3.2654 2.2983 24 6 0.5062 -2.1718 1.6728 25 1 -0.4850 0.8401 0.0004 26 1 2.6216 -3.7701 -0.4814 27 1 1.6784 -5.7131 0.6613 28 1 -1.0634 -5.6687 2.8365 29 1 -1.8678 -7.0340 3.8459 30 1 -2.7204 -8.9829 5.0818 31 1 1.9405 -9.0071 3.6064 32 1 -0.7558 -3.1396 3.0749 33 1 0.1804 -1.1810 1.9528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041039704.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:08 Heat of formation + Delta-G solvation = -33.880752 kcal Electronic energy + Delta-G solvation = -20569.159873 eV Core-core repulsion = 17087.582952 eV Total energy + Delta-G solvation = -3481.576921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.16623 -41.83863 -40.52539 -39.00305 -36.32573 -35.02089 -33.90801 -32.07390 -31.47145 -30.84602 -27.40534 -25.66098 -24.70119 -23.48748 -22.65520 -21.58878 -19.75223 -19.27256 -18.61260 -18.08693 -17.29986 -17.25674 -16.99726 -16.94232 -16.25779 -15.82419 -15.64145 -15.12399 -15.02557 -14.69798 -14.42693 -14.20394 -13.98673 -13.83218 -13.38399 -13.25215 -12.84790 -12.70199 -12.35880 -11.97082 -11.62037 -11.40510 -11.23669 -11.07499 -10.78598 -10.53533 -10.18188 -9.49812 -9.05512 -8.75804 -6.25551 -0.60384 -0.23922 0.83009 1.13199 1.38083 1.43700 1.55383 1.76346 1.99062 2.19459 2.45202 2.52809 2.65660 3.39459 3.47770 3.68352 3.73351 3.73454 4.30663 4.38866 4.43413 4.50728 4.65906 4.81775 4.89223 5.08860 5.11764 5.23988 5.38023 5.41403 5.62473 5.83610 5.98251 6.05450 6.33067 6.44599 6.56121 6.61500 6.87191 6.94925 7.22753 8.17996 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.047518 B = 0.002997 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.108798 B = 9339.333152 C = 9729.485516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.054 3.946 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.074 0.926 9 C 0.086 3.914 10 C -0.247 4.247 11 C -0.074 4.074 12 C -0.017 4.017 13 N -0.621 5.621 14 C 0.540 3.460 15 O -0.563 6.563 16 C -0.060 4.060 17 C -0.134 4.134 18 C 0.147 3.853 19 N -0.517 5.517 20 C 0.293 3.707 21 F -0.116 7.116 22 C -0.148 4.148 23 C -0.092 4.092 24 C -0.191 4.191 25 H 0.296 0.704 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.419 0.581 29 H 0.186 0.814 30 H 0.221 0.779 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 -9.870 8.704 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.167 4.167 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.530 4.530 8 H 0.093 0.907 9 C 0.084 3.916 10 C -0.267 4.267 11 C -0.094 4.094 12 C -0.110 4.110 13 N -0.266 5.266 14 C 0.328 3.672 15 O -0.443 6.443 16 C -0.071 4.071 17 C -0.154 4.154 18 C -0.010 4.010 19 N -0.233 5.233 20 C 0.141 3.859 21 F -0.095 7.095 22 C -0.170 4.170 23 C -0.111 4.111 24 C -0.211 4.211 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.258 0.742 29 H 0.203 0.797 30 H 0.238 0.762 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.435 -10.496 8.901 15.642 hybrid contribution 0.848 1.044 -0.664 1.500 sum -6.587 -9.451 8.236 14.162 Atomic orbital electron populations 1.69922 1.09289 1.31600 1.30814 1.26699 0.95094 1.04351 0.90509 0.85384 0.79658 0.76238 0.79672 1.18485 1.18364 1.18658 1.19741 1.05775 0.95370 1.32084 0.90740 1.17924 0.90642 0.92287 0.90793 1.20708 1.07976 0.92791 1.05220 1.20415 0.96956 0.97493 0.94498 1.17030 1.06559 0.86055 1.01394 1.42570 1.13190 1.14387 1.56502 1.18520 0.85483 0.83242 0.79977 1.90780 1.18898 1.80495 1.54088 1.20094 0.95525 0.93347 0.98143 1.22836 0.93766 1.01774 0.97048 1.23305 1.00347 0.85485 0.91858 1.66985 1.03948 1.30764 1.21596 1.17961 0.87519 0.84112 0.96325 1.91622 1.73326 1.53251 1.91317 1.21884 1.02922 0.92637 0.99594 1.20448 1.00525 0.90576 0.99593 1.20669 1.03228 0.97355 0.99808 0.89326 0.89087 0.88087 0.74198 0.79684 0.76247 0.83164 0.85246 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.81 11.78 21.82 0.26 -38.55 16 2 C 0.05 2.59 4.77 85.24 0.41 3.00 16 3 Si 0.97 36.25 29.66 68.60 2.03 38.29 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.50 -26.72 8.94 23.39 0.21 -26.51 16 8 H 0.07 3.91 8.02 -2.91 -0.02 3.89 16 9 C 0.09 4.61 5.57 -21.27 -0.12 4.49 16 10 C -0.25 -12.71 9.74 22.48 0.22 -12.49 16 11 C -0.07 -3.49 8.59 22.14 0.19 -3.30 16 12 C -0.02 -0.72 6.25 38.60 0.24 -0.48 16 13 N -0.62 -18.88 5.25 -305.50 -1.60 -20.48 16 14 C 0.54 17.23 7.60 86.86 0.66 17.89 16 15 O -0.56 -23.40 14.06 -3.78 -0.05 -23.45 16 16 C -0.06 -1.39 5.91 -19.89 -0.12 -1.51 16 17 C -0.13 -1.86 9.61 22.63 0.22 -1.64 16 18 C 0.15 1.85 11.17 84.63 0.95 2.80 16 19 N -0.52 -10.54 10.35 -197.10 -2.04 -12.58 16 20 C 0.29 6.82 8.41 84.74 0.71 7.53 16 21 F -0.12 -2.83 17.29 44.97 0.78 -2.06 16 22 C -0.15 -3.60 9.66 22.69 0.22 -3.38 16 23 C -0.09 -3.83 9.90 22.14 0.22 -3.61 16 24 C -0.19 -9.42 8.74 22.48 0.20 -9.23 16 25 H 0.30 12.77 8.30 -92.71 -0.77 12.00 16 26 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 27 H 0.10 4.74 6.45 -2.91 -0.02 4.72 16 28 H 0.42 8.54 6.97 -92.71 -0.65 7.90 16 29 H 0.19 1.18 6.54 -2.91 -0.02 1.16 16 30 H 0.22 0.71 8.06 -2.91 -0.02 0.69 16 31 H 0.15 3.87 7.74 -2.91 -0.02 3.85 16 32 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.10 5.04 6.52 -2.91 -0.02 5.02 16 Total: -1.00 -67.49 299.26 4.11 -63.38 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.53 Total: 21.88 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 4.20 Total: -26.43 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -3.39 Total: -71.60 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.45 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.29 kcal Total: -67.49 4.11 -63.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041039704.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.498 kcal (2) G-P(sol) polarization free energy of solvation -67.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds