Wall clock time and date at job start Tue Mar 31 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47120 * 274.98963 * 3 2 1 5 5 H 1.48504 * 109.46664 * 34.98982 * 3 2 1 6 6 H 1.48494 * 109.47114 * 154.98716 * 3 2 1 7 7 C 1.39912 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99838 * 147.55852 * 7 2 1 9 9 C 1.41137 * 120.00042 * 327.55253 * 7 2 1 10 10 C 1.40879 * 120.16492 * 157.96041 * 9 7 2 11 11 C 1.36358 * 119.83436 * 180.02562 * 10 9 7 12 12 C 1.39512 * 120.16616 * 0.02562 * 11 10 9 13 13 N 1.39122 * 119.83496 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00361 * 37.84694 * 13 12 11 15 15 O 1.21575 * 119.99268 * 356.67895 * 14 13 12 16 16 C 1.47676 * 120.00134 * 176.67326 * 14 13 12 17 17 C 1.40181 * 120.52844 * 179.97438 * 16 14 13 18 18 C 1.38143 * 118.31888 * 180.02562 * 17 16 14 19 19 C 1.38761 * 119.28921 * 0.02562 * 18 17 16 20 20 F 1.35101 * 119.49578 * 179.97438 * 19 18 17 21 21 N 1.32149 * 121.01898 * 0.25615 * 19 18 17 22 22 C 1.31690 * 121.84285 * 359.47443 * 21 19 18 23 23 C 1.39512 * 120.32521 * 0.27600 * 12 11 10 24 24 C 1.36359 * 120.17055 * 359.44172 * 23 12 11 25 25 H 0.97000 * 119.99951 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.07835 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.91581 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99876 * 217.84215 * 13 12 11 29 29 H 1.07995 * 120.84263 * 0.02562 * 17 16 14 30 30 H 1.08003 * 120.36145 * 180.02562 * 18 17 16 31 31 H 1.08005 * 119.70423 * 180.29184 * 22 21 19 32 32 H 1.08001 * 119.91649 * 179.70025 * 23 12 11 33 33 H 1.07996 * 120.09197 * 180.27363 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4968 2.6199 0.8029 6 1 3.5889 1.4120 0.5920 7 6 2.0082 -1.2117 -0.0005 8 1 2.9618 -1.2844 -0.5023 9 6 1.4678 -2.3388 0.6547 10 6 1.8858 -3.6351 0.2945 11 6 1.3589 -4.7194 0.9317 12 6 0.4077 -4.5476 1.9377 13 7 -0.1258 -5.6587 2.5829 14 6 0.6601 -6.7172 2.8629 15 8 1.8198 -6.7265 2.4984 16 6 0.1124 -7.8657 3.6126 17 6 0.9197 -8.9725 3.9094 18 6 0.3604 -10.0219 4.6126 19 6 -0.9704 -9.9476 4.9985 20 9 -1.5218 -10.9717 5.6859 21 7 -1.7084 -8.8930 4.6993 22 6 -1.2174 -7.8671 4.0354 23 6 -0.0158 -3.2673 2.2955 24 6 0.5064 -2.1733 1.6712 25 1 -0.4850 0.8400 0.0004 26 1 2.6218 -3.7696 -0.4844 27 1 1.6780 -5.7136 0.6563 28 1 -1.0634 -5.6716 2.8312 29 1 1.9528 -9.0042 3.5964 30 1 0.9525 -10.8908 4.8594 31 1 -1.8505 -7.0207 3.8134 32 1 -0.7561 -3.1422 3.0719 33 1 0.1809 -1.1826 1.9523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069705546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:58 Heat of formation + Delta-G solvation = -17.043545 kcal Electronic energy + Delta-G solvation = -20528.503676 eV Core-core repulsion = 17047.656871 eV Total energy + Delta-G solvation = -3480.846805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.35010 -40.72755 -39.17473 -37.25493 -34.66378 -33.26342 -32.98352 -31.42931 -29.63169 -28.96480 -25.56280 -24.41648 -23.86834 -21.80624 -20.92574 -20.06045 -18.54484 -17.75787 -17.63940 -17.33755 -16.39803 -16.11355 -15.26746 -15.19900 -14.80137 -14.60822 -14.05489 -13.87282 -13.45212 -13.44845 -13.18812 -12.99104 -12.68118 -12.16540 -12.05258 -11.54624 -11.20366 -11.01428 -10.62009 -10.38381 -10.36699 -10.12586 -9.83560 -9.57700 -9.35349 -9.18236 -8.79487 -7.62626 -7.23769 -6.96439 -4.34509 0.23643 0.74921 2.49469 2.83129 3.00630 3.02580 3.05557 3.15194 3.18164 3.45780 3.65937 3.83819 4.09816 4.42092 4.44085 4.47536 4.81695 5.02075 5.21230 5.54476 5.59869 5.72736 6.11740 6.16213 6.34392 6.65668 6.85827 6.92572 7.05206 7.18894 7.20151 7.48337 7.58306 7.78553 7.94557 8.14333 8.18038 8.46195 8.59142 8.76447 8.90587 9.94318 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.051643 B = 0.002926 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.051979 B = 9567.138251 C = 9925.668064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.462 4.462 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.225 4.225 11 C -0.061 4.061 12 C -0.031 4.031 13 N -0.635 5.635 14 C 0.544 3.456 15 O -0.525 6.525 16 C -0.183 4.183 17 C 0.007 3.993 18 C -0.198 4.198 19 C 0.320 3.680 20 F -0.110 7.110 21 N -0.516 5.516 22 C 0.167 3.833 23 C -0.097 4.097 24 C -0.172 4.172 25 H 0.284 0.716 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.393 0.607 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.172 0.828 32 H 0.090 0.910 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 -11.960 7.230 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.245 4.245 11 C -0.081 4.081 12 C -0.122 4.122 13 N -0.278 5.278 14 C 0.330 3.670 15 O -0.403 6.403 16 C -0.189 4.189 17 C -0.019 4.019 18 C -0.219 4.219 19 C 0.166 3.834 20 F -0.089 7.089 21 N -0.230 5.230 22 C 0.009 3.991 23 C -0.118 4.118 24 C -0.192 4.192 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.228 0.772 29 H 0.178 0.822 30 H 0.172 0.828 31 H 0.189 0.811 32 H 0.109 0.891 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.809 -11.860 7.249 14.181 hybrid contribution 0.392 0.550 0.065 0.679 sum -2.416 -11.310 7.314 13.684 Atomic orbital electron populations 1.69937 1.08117 1.30039 1.30734 1.25968 0.94387 1.01628 0.91490 0.86487 0.81530 0.80687 0.79279 1.19392 1.19828 1.18033 1.19546 1.05398 0.93746 1.30222 0.89885 1.17615 0.89583 0.91870 0.89788 1.20591 1.07162 0.92275 1.04457 1.20291 0.96154 0.98039 0.93641 1.16993 1.08014 0.84560 1.02666 1.42800 1.11803 1.15924 1.57264 1.17820 0.86048 0.82568 0.80551 1.90787 1.16860 1.79746 1.52909 1.21250 0.95898 0.97718 1.04038 1.21673 1.00897 0.89322 0.89999 1.21834 0.94448 1.02295 1.03363 1.18392 0.88609 0.84742 0.91615 1.91640 1.86494 1.54763 1.76019 1.66997 1.39243 1.01171 1.15567 1.22780 0.92189 0.94280 0.89829 1.20164 1.00530 0.91477 0.99580 1.20624 1.02570 0.96680 0.99283 0.90466 0.88644 0.87926 0.77209 0.82228 0.82764 0.81143 0.89137 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.76 11.78 55.55 0.65 -18.11 16 2 C 0.09 2.10 4.77 -17.34 -0.08 2.02 16 3 Si 0.90 17.70 29.66 -169.99 -5.04 12.65 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.85 8.94 -37.86 -0.34 -12.19 16 8 H 0.08 2.07 8.02 -52.49 -0.42 1.64 16 9 C 0.11 2.96 5.57 -106.80 -0.60 2.37 16 10 C -0.22 -5.55 9.74 -39.26 -0.38 -5.93 16 11 C -0.06 -1.43 8.59 -39.78 -0.34 -1.77 16 12 C -0.03 -0.65 6.25 -83.60 -0.52 -1.17 16 13 N -0.64 -10.55 5.24 -10.64 -0.06 -10.61 16 14 C 0.54 8.95 7.58 -12.40 -0.09 8.86 16 15 O -0.53 -10.57 14.03 5.30 0.07 -10.50 16 16 C -0.18 -2.29 5.89 -104.83 -0.62 -2.91 16 17 C 0.01 0.08 9.71 -38.89 -0.38 -0.30 16 18 C -0.20 -1.81 10.07 -39.42 -0.40 -2.21 16 19 C 0.32 3.53 8.41 -17.22 -0.14 3.38 16 20 F -0.11 -1.20 17.29 2.25 0.04 -1.16 16 21 N -0.52 -6.24 10.36 -13.21 -0.14 -6.37 16 22 C 0.17 1.85 10.71 -17.13 -0.18 1.67 16 23 C -0.10 -2.13 9.90 -39.78 -0.39 -2.53 16 24 C -0.17 -4.24 8.74 -39.26 -0.34 -4.59 16 25 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 26 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 27 H 0.10 2.33 6.45 -52.49 -0.34 1.99 16 28 H 0.39 5.01 6.89 -40.82 -0.28 4.73 16 29 H 0.16 1.59 7.73 -52.49 -0.41 1.19 16 30 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 31 H 0.17 1.45 6.42 -52.48 -0.34 1.11 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.11 2.70 6.52 -52.49 -0.34 2.36 16 LS Contribution 299.05 15.07 4.51 4.51 Total: -1.00 -29.41 299.05 -7.30 -36.71 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -2.53 Total: 8.19 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -4.81 Total: -15.30 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.46 Total: -35.09 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.04 Total: 12.65 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.41 -7.30 -36.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069705546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.665 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds