Wall clock time and date at job start Tue Mar 31 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47120 * 274.98963 * 3 2 1 5 5 H 1.48504 * 109.46664 * 34.98982 * 3 2 1 6 6 H 1.48494 * 109.47114 * 154.98716 * 3 2 1 7 7 C 1.39912 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99838 * 147.55852 * 7 2 1 9 9 C 1.41137 * 120.00042 * 327.55253 * 7 2 1 10 10 C 1.40879 * 120.16492 * 157.96041 * 9 7 2 11 11 C 1.36358 * 119.83436 * 180.02562 * 10 9 7 12 12 C 1.39512 * 120.16616 * 0.02562 * 11 10 9 13 13 N 1.39122 * 119.83496 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00361 * 37.84694 * 13 12 11 15 15 O 1.21575 * 119.99268 * 356.67895 * 14 13 12 16 16 C 1.47676 * 120.00134 * 176.67326 * 14 13 12 17 17 C 1.40181 * 120.52844 * 179.97438 * 16 14 13 18 18 C 1.38143 * 118.31888 * 180.02562 * 17 16 14 19 19 C 1.38761 * 119.28921 * 0.02562 * 18 17 16 20 20 F 1.35101 * 119.49578 * 179.97438 * 19 18 17 21 21 N 1.32149 * 121.01898 * 0.25615 * 19 18 17 22 22 C 1.31690 * 121.84285 * 359.47443 * 21 19 18 23 23 C 1.39512 * 120.32521 * 0.27600 * 12 11 10 24 24 C 1.36359 * 120.17055 * 359.44172 * 23 12 11 25 25 H 0.97000 * 119.99951 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.07835 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.91581 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99876 * 217.84215 * 13 12 11 29 29 H 1.07995 * 120.84263 * 0.02562 * 17 16 14 30 30 H 1.08003 * 120.36145 * 180.02562 * 18 17 16 31 31 H 1.08005 * 119.70423 * 180.29184 * 22 21 19 32 32 H 1.08001 * 119.91649 * 179.70025 * 23 12 11 33 33 H 1.07996 * 120.09197 * 180.27363 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4968 2.6199 0.8029 6 1 3.5889 1.4120 0.5920 7 6 2.0082 -1.2117 -0.0005 8 1 2.9618 -1.2844 -0.5023 9 6 1.4678 -2.3388 0.6547 10 6 1.8858 -3.6351 0.2945 11 6 1.3589 -4.7194 0.9317 12 6 0.4077 -4.5476 1.9377 13 7 -0.1258 -5.6587 2.5829 14 6 0.6601 -6.7172 2.8629 15 8 1.8198 -6.7265 2.4984 16 6 0.1124 -7.8657 3.6126 17 6 0.9197 -8.9725 3.9094 18 6 0.3604 -10.0219 4.6126 19 6 -0.9704 -9.9476 4.9985 20 9 -1.5218 -10.9717 5.6859 21 7 -1.7084 -8.8930 4.6993 22 6 -1.2174 -7.8671 4.0354 23 6 -0.0158 -3.2673 2.2955 24 6 0.5064 -2.1733 1.6712 25 1 -0.4850 0.8400 0.0004 26 1 2.6218 -3.7696 -0.4844 27 1 1.6780 -5.7136 0.6563 28 1 -1.0634 -5.6716 2.8312 29 1 1.9528 -9.0042 3.5964 30 1 0.9525 -10.8908 4.8594 31 1 -1.8505 -7.0207 3.8134 32 1 -0.7561 -3.1422 3.0719 33 1 0.1809 -1.1826 1.9523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069705546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:58 Heat of formation + Delta-G solvation = -34.538681 kcal Electronic energy + Delta-G solvation = -20529.262322 eV Core-core repulsion = 17047.656871 eV Total energy + Delta-G solvation = -3481.605451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.19803 -41.82761 -40.47012 -38.93952 -36.28407 -34.92451 -33.88345 -32.51353 -31.44712 -30.65291 -27.12100 -25.48146 -24.92795 -23.43406 -22.60365 -21.53370 -19.53791 -19.28665 -18.85744 -18.62020 -17.54180 -17.25852 -16.98730 -16.22699 -16.21566 -15.76814 -15.58464 -15.04012 -14.80252 -14.54878 -14.27676 -14.16846 -14.06535 -13.91735 -13.77058 -13.33488 -12.83564 -12.68326 -12.34399 -11.94117 -11.59520 -11.34956 -11.24143 -11.03023 -10.74350 -10.51023 -10.23711 -9.47586 -9.02605 -8.73676 -6.23618 -0.69196 -0.06408 0.84460 1.15116 1.38357 1.44043 1.55641 1.75278 2.17103 2.20026 2.33366 2.52895 2.68074 3.27168 3.53550 3.64993 3.70367 3.83481 4.14793 4.39752 4.45943 4.49833 4.72171 4.86556 4.92119 5.10908 5.14362 5.26811 5.34253 5.42274 5.64552 5.86147 6.01140 6.07932 6.33359 6.35083 6.59813 6.65203 6.89095 6.97471 7.28264 8.19605 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.051643 B = 0.002926 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.051979 B = 9567.138251 C = 9925.668064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.053 3.947 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.085 3.915 10 C -0.245 4.245 11 C -0.072 4.072 12 C -0.014 4.014 13 N -0.631 5.631 14 C 0.551 3.449 15 O -0.565 6.565 16 C -0.197 4.197 17 C 0.009 3.991 18 C -0.180 4.180 19 C 0.315 3.685 20 F -0.110 7.110 21 N -0.536 5.536 22 C 0.178 3.822 23 C -0.096 4.096 24 C -0.191 4.191 25 H 0.295 0.705 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.415 0.585 29 H 0.166 0.834 30 H 0.189 0.811 31 H 0.194 0.806 32 H 0.126 0.874 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 -12.875 8.683 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.167 4.167 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.530 4.530 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.265 4.265 11 C -0.092 4.092 12 C -0.107 4.107 13 N -0.276 5.276 14 C 0.339 3.661 15 O -0.445 6.445 16 C -0.202 4.202 17 C -0.017 4.017 18 C -0.201 4.201 19 C 0.163 3.837 20 F -0.089 7.089 21 N -0.250 5.250 22 C 0.020 3.980 23 C -0.115 4.115 24 C -0.211 4.211 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.253 0.747 29 H 0.184 0.816 30 H 0.207 0.793 31 H 0.211 0.789 32 H 0.144 0.856 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.614 -12.809 8.719 15.910 hybrid contribution 0.563 0.580 -0.301 0.863 sum -3.050 -12.229 8.418 15.156 Atomic orbital electron populations 1.69932 1.09336 1.31525 1.31076 1.26712 0.95078 1.04404 0.90530 0.85385 0.79668 0.76240 0.79653 1.18465 1.18509 1.18563 1.19728 1.05798 0.95315 1.32176 0.90663 1.17923 0.90659 0.92408 0.90772 1.20719 1.07927 0.92720 1.05166 1.20417 0.96891 0.97586 0.94335 1.17040 1.06339 0.85991 1.01285 1.42674 1.13065 1.14790 1.57061 1.18316 0.85389 0.82850 0.79544 1.90774 1.18727 1.80584 1.54413 1.20910 0.96945 0.96989 1.05374 1.21835 1.01103 0.89093 0.89646 1.22057 0.93729 1.02635 1.01638 1.18672 0.89258 0.84494 0.91305 1.91646 1.86586 1.54689 1.75965 1.67032 1.39877 1.01784 1.16315 1.23025 0.91684 0.94585 0.88718 1.20449 1.00599 0.90820 0.99673 1.20654 1.03293 0.97242 0.99879 0.89420 0.88941 0.87766 0.74681 0.81639 0.79343 0.78929 0.85638 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.55 11.78 21.82 0.26 -39.30 16 2 C 0.05 2.57 4.77 85.24 0.41 2.98 16 3 Si 0.97 36.64 29.66 68.60 2.03 38.67 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 5 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.50 -26.89 8.94 23.39 0.21 -26.68 16 8 H 0.08 3.96 8.02 -2.91 -0.02 3.93 16 9 C 0.09 4.58 5.57 -21.27 -0.12 4.46 16 10 C -0.25 -12.60 9.74 22.48 0.22 -12.38 16 11 C -0.07 -3.41 8.59 22.14 0.19 -3.22 16 12 C -0.01 -0.57 6.25 38.60 0.24 -0.33 16 13 N -0.63 -19.79 5.24 -305.85 -1.60 -21.39 16 14 C 0.55 17.30 7.58 86.74 0.66 17.95 16 15 O -0.56 -22.44 14.03 -3.95 -0.06 -22.50 16 16 C -0.20 -4.47 5.89 -20.00 -0.12 -4.59 16 17 C 0.01 0.17 9.71 22.72 0.22 0.39 16 18 C -0.18 -2.67 10.07 22.37 0.23 -2.45 16 19 C 0.32 6.04 8.41 84.77 0.71 6.76 16 20 F -0.11 -2.11 17.29 44.97 0.78 -1.33 16 21 N -0.54 -11.52 10.36 -195.70 -2.03 -13.55 16 22 C 0.18 3.45 10.71 85.03 0.91 4.36 16 23 C -0.10 -4.10 9.90 22.14 0.22 -3.88 16 24 C -0.19 -9.59 8.74 22.48 0.20 -9.39 16 25 H 0.29 12.99 8.30 -92.71 -0.77 12.22 16 26 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 27 H 0.10 4.81 6.45 -2.91 -0.02 4.79 16 28 H 0.41 9.40 6.89 -92.71 -0.64 8.76 16 29 H 0.17 2.95 7.73 -2.91 -0.02 2.92 16 30 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.19 2.64 6.42 -2.91 -0.02 2.63 16 32 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.10 5.05 6.52 -2.91 -0.02 5.03 16 Total: -1.00 -65.28 299.05 4.10 -61.18 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.54 Total: 24.23 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 4.17 Total: -26.02 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -3.37 Total: -74.24 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.06 Total: -22.50 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.78 Total: -1.33 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -65.28 4.10 -61.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069705546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.646 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds