Wall clock time and date at job start Tue Mar 31 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86802 * 119.99641 * 2 1 4 4 H 1.48504 * 109.47157 * 269.99590 * 3 2 1 5 5 H 1.48502 * 109.47466 * 30.00250 * 3 2 1 6 6 H 1.48502 * 109.46869 * 149.99893 * 3 2 1 7 7 C 1.38627 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00228 * 359.97438 * 7 2 1 9 9 O 1.34819 * 120.00043 * 180.02562 * 7 2 1 10 10 C 1.35776 * 117.00400 * 174.96219 * 9 7 2 11 11 C 1.38906 * 120.00261 * 185.07023 * 10 9 7 12 12 C 1.38007 * 120.00034 * 179.72667 * 11 10 9 13 13 C 1.38909 * 119.99974 * 0.56773 * 12 11 10 14 14 N 1.40026 * 119.99913 * 179.68283 * 13 12 11 15 15 C 1.34778 * 120.00308 * 35.14834 * 14 13 12 16 16 O 1.21589 * 119.99680 * 355.49321 * 15 14 13 17 17 N 1.34770 * 119.99843 * 175.49447 * 15 14 13 18 18 C 1.46507 * 119.99938 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47345 * 179.97438 * 18 17 15 20 20 F 1.39901 * 109.46878 * 299.99786 * 19 18 17 21 21 F 1.39904 * 109.47096 * 59.99407 * 19 18 17 22 22 C 1.38910 * 119.99845 * 359.70479 * 13 12 11 23 23 C 1.38013 * 119.99928 * 359.97438 * 22 13 12 24 24 H 0.96998 * 120.00132 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.99473 * 359.97438 * 11 10 9 26 26 H 1.08000 * 119.99460 * 180.24993 * 12 11 10 27 27 H 0.97003 * 119.99863 * 215.14809 * 14 13 12 28 28 H 0.97000 * 120.00686 * 359.97438 * 17 15 14 29 29 H 1.09001 * 109.46536 * 299.99654 * 18 17 15 30 30 H 1.08997 * 109.47297 * 59.99162 * 18 17 15 31 31 H 1.08998 * 109.46943 * 179.97438 * 19 18 17 32 32 H 1.08004 * 120.00043 * 179.97438 * 22 13 12 33 33 H 1.07998 * 119.99661 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 1.4472 2.6528 0.7001 6 1 3.5473 1.4403 0.7001 7 6 2.0089 -1.2005 -0.0005 8 1 1.4690 -2.1359 -0.0005 9 8 3.3571 -1.2006 0.0000 10 6 3.9736 -2.4057 0.1056 11 6 5.3565 -2.4709 0.2186 12 6 5.9826 -3.6956 0.3317 13 6 5.2308 -4.8636 0.3207 14 7 5.8666 -6.1065 0.4287 15 6 6.9634 -6.2376 1.2009 16 8 7.4488 -5.2608 1.7382 17 7 7.5220 -7.4513 1.3775 18 6 8.7140 -7.5939 2.2174 19 6 9.1414 -9.0625 2.2511 20 9 8.1036 -9.8382 2.7789 21 9 9.4318 -9.4937 0.9522 22 6 3.8483 -4.7986 0.2020 23 6 3.2217 -3.5736 0.0956 24 1 -0.4850 0.8400 0.0004 25 1 5.9414 -1.5630 0.2220 26 1 7.0575 -3.7461 0.4236 27 1 5.5176 -6.8733 -0.0523 28 1 7.1346 -8.2306 0.9492 29 1 9.5224 -6.9891 1.8064 30 1 8.4876 -7.2583 3.2294 31 1 10.0285 -9.1684 2.8756 32 1 3.2637 -5.7068 0.1930 33 1 2.1468 -3.5231 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072502034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:10 Heat of formation + Delta-G solvation = -148.320096 kcal Electronic energy + Delta-G solvation = -21396.228416 eV Core-core repulsion = 17478.919808 eV Total energy + Delta-G solvation = -3917.308608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.94316 -47.94568 -41.66828 -40.57898 -38.45597 -36.00449 -35.44618 -34.34103 -31.89027 -30.92587 -29.16222 -27.12777 -24.32653 -23.89645 -22.91451 -21.97221 -20.21607 -19.45581 -19.17945 -18.61975 -18.35032 -18.09393 -17.01290 -16.70532 -16.49559 -16.16757 -15.69066 -15.63068 -15.41530 -15.14246 -14.93005 -14.45804 -14.34320 -14.25068 -14.15212 -13.86646 -13.42258 -13.40003 -13.24481 -12.75657 -12.50546 -12.06228 -11.98919 -11.46171 -11.39837 -11.03111 -10.66814 -10.29102 -9.85885 -8.64764 -8.47942 -6.19023 0.49859 0.54154 1.33389 1.36815 1.47838 1.53767 2.01935 2.30109 2.74797 2.78328 3.04494 3.09083 3.19984 3.33394 3.62265 3.95007 4.03989 4.13078 4.48214 4.50550 4.57264 4.60688 4.74159 5.06805 5.14329 5.23917 5.35908 5.50532 5.56619 5.77127 5.85137 5.94424 6.21957 6.86822 6.90128 7.42923 7.61460 8.63430 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.050612 B = 0.002790 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.098493 B =10033.345893 C =10324.635337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.397 4.397 8 H 0.086 0.914 9 O -0.245 6.245 10 C 0.113 3.887 11 C -0.176 4.176 12 C -0.075 4.075 13 C 0.089 3.911 14 N -0.664 5.664 15 C 0.702 3.298 16 O -0.612 6.612 17 N -0.732 5.732 18 C 0.083 3.917 19 C 0.260 3.740 20 F -0.214 7.214 21 F -0.213 7.213 22 C -0.085 4.085 23 C -0.214 4.214 24 H 0.284 0.716 25 H 0.128 0.872 26 H 0.140 0.860 27 H 0.422 0.578 28 H 0.412 0.588 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.173 0.827 32 H 0.153 0.847 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.870 -20.032 3.117 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.104 0.896 9 O -0.152 6.152 10 C 0.064 3.936 11 C -0.195 4.195 12 C -0.095 4.095 13 C -0.006 4.006 14 N -0.313 5.313 15 C 0.403 3.597 16 O -0.492 6.492 17 N -0.390 5.390 18 C -0.041 4.041 19 C 0.206 3.794 20 F -0.196 7.196 21 F -0.195 7.195 22 C -0.106 4.106 23 C -0.233 4.233 24 H 0.094 0.906 25 H 0.146 0.854 26 H 0.158 0.842 27 H 0.260 0.740 28 H 0.249 0.751 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.190 0.810 32 H 0.170 0.830 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 19.234 -18.914 3.593 27.214 hybrid contribution -0.835 -0.046 -0.520 0.985 sum 18.399 -18.959 3.073 26.597 Atomic orbital electron populations 1.69731 1.06788 1.29521 1.50358 1.25232 0.95850 1.02031 0.95655 0.85258 0.78783 0.77684 0.79278 1.19016 1.19347 1.18912 1.20740 0.78048 0.96252 1.52301 0.89621 1.83528 1.21305 1.27281 1.83115 1.19598 0.92788 0.85398 0.95863 1.20330 0.90871 0.98991 1.09351 1.20930 1.00340 0.90191 0.98045 1.17174 0.90740 0.84765 1.07894 1.42119 1.28850 1.10889 1.49439 1.15974 0.80535 0.83837 0.79365 1.90924 1.65117 1.38445 1.54692 1.44729 1.31762 1.07971 1.54503 1.22574 0.88517 0.95195 0.97861 1.22606 0.90713 0.86488 0.79570 1.93004 1.62546 1.77644 1.86385 1.93004 1.93868 1.91254 1.41362 1.20776 0.92136 0.97564 1.00089 1.21130 1.00507 0.92191 1.09507 0.90624 0.85418 0.84205 0.74029 0.75129 0.87815 0.88169 0.81013 0.82982 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.10 13.96 21.61 0.30 -54.80 16 2 C 0.01 0.62 5.49 84.82 0.47 1.08 16 3 Si 0.97 45.88 28.62 68.60 1.96 47.84 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.40 -23.32 9.94 67.91 0.68 -22.65 16 8 H 0.09 5.19 5.43 -2.91 -0.02 5.17 16 9 O -0.24 -13.41 8.58 -22.92 -0.20 -13.61 16 10 C 0.11 5.36 6.65 22.59 0.15 5.51 16 11 C -0.18 -7.25 9.98 22.38 0.22 -7.03 16 12 C -0.07 -2.72 8.69 22.38 0.19 -2.52 16 13 C 0.09 2.83 6.30 38.15 0.24 3.07 16 14 N -0.66 -15.37 5.34 -317.05 -1.69 -17.07 16 15 C 0.70 17.20 8.41 179.06 1.51 18.71 16 16 O -0.61 -20.12 13.78 -4.00 -0.06 -20.18 16 17 N -0.73 -11.42 5.42 -478.54 -2.59 -14.01 16 18 C 0.08 0.92 5.91 86.38 0.51 1.43 16 19 C 0.26 1.75 5.42 71.98 0.39 2.14 16 20 F -0.21 -2.53 17.20 44.97 0.77 -1.76 16 21 F -0.21 -2.42 17.20 44.97 0.77 -1.65 16 22 C -0.09 -2.83 9.96 22.38 0.22 -2.61 16 23 C -0.21 -9.16 9.16 22.38 0.20 -8.95 16 24 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.13 4.97 8.06 -2.91 -0.02 4.94 16 26 H 0.14 4.94 6.22 -2.91 -0.02 4.92 16 27 H 0.42 6.37 8.84 -92.71 -0.82 5.55 16 28 H 0.41 4.62 8.38 -92.71 -0.78 3.84 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.17 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 33 H 0.12 5.58 5.63 -2.91 -0.02 5.56 16 Total: -1.00 -74.69 300.68 3.65 -71.04 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.40 Total: 16.01 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.78 Total: -11.81 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -3.99 Total: -85.88 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.25 Total: -33.79 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 1.55 Total: -3.41 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.96 Total: 47.84 kcal Total: -74.69 3.65 -71.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072502034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.284 kcal (2) G-P(sol) polarization free energy of solvation -74.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds