Wall clock time and date at job start Tue Mar 31 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46906 * 109.47302 * 120.00381 * 2 1 3 5 5 C 1.46898 * 110.99498 * 299.99832 * 4 2 1 6 6 C 1.53006 * 109.47138 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47440 * 179.97438 * 6 5 4 8 8 S 1.81000 * 109.47287 * 179.97438 * 7 6 5 9 9 C 1.76196 * 100.00031 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99948 * 0.02562 * 9 8 7 11 11 C 1.38798 * 120.00243 * 179.97438 * 9 8 7 12 12 N 1.31632 * 119.99472 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00230 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47297 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46715 * 120.00560 * 13 11 9 16 16 H 1.48497 * 109.47460 * 240.00116 * 13 11 9 17 17 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 18 18 N 1.29023 * 124.91550 * 184.69489 * 17 2 1 19 19 C 1.31780 * 117.12232 * 179.81661 * 18 17 2 20 20 C 1.33638 * 114.50188 * 0.47328 * 19 18 17 21 21 S 1.70971 * 124.91317 * 5.00465 * 17 2 1 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.00904 * 111.00081 * 63.94806 * 4 2 1 29 29 H 1.08995 * 109.47296 * 299.99915 * 5 4 2 30 30 H 1.08997 * 109.47334 * 60.00216 * 5 4 2 31 31 H 1.09004 * 109.46866 * 299.99877 * 6 5 4 32 32 H 1.08997 * 109.46770 * 59.99946 * 6 5 4 33 33 H 1.08999 * 109.46939 * 300.00567 * 7 6 5 34 34 H 1.09000 * 109.46858 * 59.99786 * 7 6 5 35 35 H 0.96999 * 119.99749 * 179.97438 * 12 11 9 36 36 H 1.08002 * 122.75266 * 180.22784 * 19 18 17 37 37 H 1.07998 * 126.04208 * 179.72404 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.5487 -0.0265 2.4210 6 6 2.0772 -0.7751 3.6463 7 6 1.5872 -0.0810 4.9187 8 16 2.2119 -0.9670 6.3681 9 6 1.5156 0.0181 7.6524 10 1 0.9090 0.8769 7.4057 11 6 1.7459 -0.3101 8.9812 12 7 2.4849 -1.3571 9.2819 13 14 1.0084 0.7346 10.3428 14 1 0.2250 1.8456 9.7451 15 1 0.1157 -0.1044 11.1821 16 1 2.0976 1.2928 11.1837 17 6 2.0323 -0.7105 -1.2305 18 7 3.2726 -0.9579 -1.4858 19 6 3.5397 -1.5937 -2.6088 20 6 2.4656 -1.8908 -3.3463 21 16 1.0417 -1.2986 -2.4938 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.7502 -1.6649 1.1909 29 1 1.9121 1.0010 2.4378 30 1 0.4588 -0.0267 2.4379 31 1 1.7133 -1.8024 3.6293 32 1 3.1671 -0.7753 3.6297 33 1 1.9514 0.9463 4.9354 34 1 0.4973 -0.0803 4.9354 35 1 2.6461 -1.5864 10.2105 36 1 4.5445 -1.8499 -2.9104 37 1 2.4695 -2.4030 -4.2971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072519433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:10 Heat of formation + Delta-G solvation = 32.627212 kcal Electronic energy + Delta-G solvation = -17505.228832 eV Core-core repulsion = 14728.193040 eV Total energy + Delta-G solvation = -2777.035792 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.09883 -38.07515 -34.04331 -32.40696 -30.51936 -29.62293 -27.70381 -26.03387 -25.59037 -24.55592 -21.62007 -20.62993 -19.65647 -18.03208 -17.41150 -16.29587 -15.59989 -15.47645 -14.88356 -14.78455 -14.47297 -14.08226 -13.87687 -13.72049 -13.10851 -12.93295 -12.79207 -12.28393 -12.10628 -11.76731 -11.65773 -11.58200 -11.45395 -11.15954 -11.06136 -10.75128 -10.60185 -10.34576 -9.76646 -9.61257 -9.49581 -9.15685 -9.04463 -8.45750 -8.26154 -6.49665 -6.20582 -3.90373 0.46593 1.10597 1.51760 2.66105 3.22303 3.23718 3.31379 3.57933 3.78645 4.10684 4.25105 4.53830 4.74671 4.87568 4.94465 5.15298 5.18435 5.25610 5.28659 5.38127 5.39812 5.48864 5.59001 5.62900 5.69432 5.84688 5.91207 5.96437 6.09645 6.18246 6.36436 6.63622 6.75952 6.97930 7.29302 7.60266 7.62982 8.39113 9.25769 10.87690 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.043674 B = 0.002624 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.966088 B =10669.664229 C =10929.023355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.190 3.810 3 C -0.134 4.134 4 N -0.664 5.664 5 C 0.059 3.941 6 C -0.095 4.095 7 C -0.111 4.111 8 S -0.133 6.133 9 C -0.515 4.515 10 H 0.072 0.928 11 C 0.070 3.930 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.066 3.934 18 N -0.448 5.448 19 C 0.039 3.961 20 C -0.268 4.268 21 S 0.112 5.888 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.342 0.658 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.266 0.734 36 H 0.175 0.825 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 1.480 -25.662 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.095 3.905 3 C -0.193 4.193 4 N -0.295 5.295 5 C -0.071 4.071 6 C -0.134 4.134 7 C -0.260 4.260 8 S 0.095 5.905 9 C -0.663 4.663 10 H 0.091 0.909 11 C -0.139 4.139 12 N -0.505 5.505 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.213 4.213 18 N -0.161 5.161 19 C -0.112 4.112 20 C -0.407 4.407 21 S 0.366 5.634 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.160 0.840 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.192 0.808 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.154 0.923 -25.274 25.487 hybrid contribution -1.231 1.053 0.427 1.675 sum -4.385 1.976 -24.847 25.308 Atomic orbital electron populations 1.22720 0.95710 1.03176 1.03887 1.19384 0.91632 0.94042 0.85404 1.21871 1.03157 0.92293 1.02007 1.60548 1.63127 1.05970 0.99894 1.22187 0.97261 0.99207 0.88441 1.21236 1.02025 0.98851 0.91280 1.23212 1.02224 1.02213 0.98401 1.84667 1.69025 1.40748 0.96031 1.22732 1.36659 1.15059 0.91858 0.90946 1.25021 0.95127 0.95553 0.98177 1.70037 1.36353 1.25220 1.18928 0.86117 0.78827 0.79788 0.80813 1.19626 1.20609 1.20568 1.27117 0.91329 1.02378 1.00523 1.66195 1.18459 1.13745 1.17685 1.21929 1.00567 0.98671 0.90058 1.27156 0.95264 1.11257 1.06998 1.84019 1.12431 1.52071 1.14877 0.91429 0.89976 0.91753 0.91148 0.90603 0.92403 0.83961 0.90445 0.94804 0.91871 0.90620 0.92091 0.92373 0.92386 0.80816 0.80737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 7.30 37.16 0.27 -1.41 16 2 C 0.19 2.00 0.93 -132.75 -0.12 1.88 16 3 C -0.13 -1.38 8.22 37.15 0.31 -1.07 16 4 N -0.66 -8.18 6.08 -101.14 -0.61 -8.79 16 5 C 0.06 0.77 4.90 -3.82 -0.02 0.75 16 6 C -0.10 -1.56 5.48 -26.73 -0.15 -1.71 16 7 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 8 S -0.13 -3.52 21.44 -107.50 -2.30 -5.83 16 9 C -0.51 -14.88 9.50 30.94 0.29 -14.58 16 10 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 11 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 12 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 13 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.07 0.72 6.02 -13.45 -0.08 0.64 16 18 N -0.45 -5.51 10.54 -11.86 -0.13 -5.63 16 19 C 0.04 0.38 11.35 -19.19 -0.22 0.16 16 20 C -0.27 -2.14 11.37 29.12 0.33 -1.81 16 21 S 0.11 0.95 21.59 -107.50 -2.32 -1.37 16 22 H 0.07 0.50 7.82 -51.93 -0.41 0.10 16 23 H 0.08 0.71 6.40 -51.93 -0.33 0.38 16 24 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 25 H 0.07 0.69 6.40 -51.93 -0.33 0.35 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.34 4.13 8.71 -39.29 -0.34 3.78 16 29 H 0.08 1.00 6.30 -51.93 -0.33 0.68 16 30 H 0.03 0.41 6.30 -51.93 -0.33 0.08 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 34 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -32.28 331.02 -9.35 -41.63 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.41 Total: 1.15 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 0.73 Total: -17.29 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.01 Total: -39.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -4.62 Total: -7.20 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.28 -9.35 -41.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072519433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.260 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds