Wall clock time and date at job start Tue Mar 31 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46906 * 109.47302 * 120.00381 * 2 1 3 5 5 C 1.46898 * 110.99498 * 299.99832 * 4 2 1 6 6 C 1.53006 * 109.47138 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47440 * 179.97438 * 6 5 4 8 8 S 1.81000 * 109.47287 * 179.97438 * 7 6 5 9 9 C 1.76196 * 100.00031 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99948 * 0.02562 * 9 8 7 11 11 C 1.38798 * 120.00243 * 179.97438 * 9 8 7 12 12 N 1.31632 * 119.99472 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00230 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47297 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46715 * 120.00560 * 13 11 9 16 16 H 1.48497 * 109.47460 * 240.00116 * 13 11 9 17 17 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 18 18 N 1.29023 * 124.91550 * 184.69489 * 17 2 1 19 19 C 1.31780 * 117.12232 * 179.81661 * 18 17 2 20 20 C 1.33638 * 114.50188 * 0.47328 * 19 18 17 21 21 S 1.70971 * 124.91317 * 5.00465 * 17 2 1 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.00904 * 111.00081 * 63.94806 * 4 2 1 29 29 H 1.08995 * 109.47296 * 299.99915 * 5 4 2 30 30 H 1.08997 * 109.47334 * 60.00216 * 5 4 2 31 31 H 1.09004 * 109.46866 * 299.99877 * 6 5 4 32 32 H 1.08997 * 109.46770 * 59.99946 * 6 5 4 33 33 H 1.08999 * 109.46939 * 300.00567 * 7 6 5 34 34 H 1.09000 * 109.46858 * 59.99786 * 7 6 5 35 35 H 0.96999 * 119.99749 * 179.97438 * 12 11 9 36 36 H 1.08002 * 122.75266 * 180.22784 * 19 18 17 37 37 H 1.07998 * 126.04208 * 179.72404 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.5487 -0.0265 2.4210 6 6 2.0772 -0.7751 3.6463 7 6 1.5872 -0.0810 4.9187 8 16 2.2119 -0.9670 6.3681 9 6 1.5156 0.0181 7.6524 10 1 0.9090 0.8769 7.4057 11 6 1.7459 -0.3101 8.9812 12 7 2.4849 -1.3571 9.2819 13 14 1.0084 0.7346 10.3428 14 1 0.2250 1.8456 9.7451 15 1 0.1157 -0.1044 11.1821 16 1 2.0976 1.2928 11.1837 17 6 2.0323 -0.7105 -1.2305 18 7 3.2726 -0.9579 -1.4858 19 6 3.5397 -1.5937 -2.6088 20 6 2.4656 -1.8908 -3.3463 21 16 1.0417 -1.2986 -2.4938 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.7502 -1.6649 1.1909 29 1 1.9121 1.0010 2.4378 30 1 0.4588 -0.0267 2.4379 31 1 1.7133 -1.8024 3.6293 32 1 3.1671 -0.7753 3.6297 33 1 1.9514 0.9463 4.9354 34 1 0.4973 -0.0803 4.9354 35 1 2.6461 -1.5864 10.2105 36 1 4.5445 -1.8499 -2.9104 37 1 2.4695 -2.4030 -4.2971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072519433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:09 Heat of formation + Delta-G solvation = 11.225145 kcal Electronic energy + Delta-G solvation = -17506.156895 eV Core-core repulsion = 14728.193040 eV Total energy + Delta-G solvation = -2777.963855 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.84816 -38.94397 -35.25504 -34.58652 -31.55126 -30.41728 -28.44788 -27.84616 -26.79145 -25.70546 -22.77453 -21.57414 -20.41830 -19.55750 -18.73058 -17.17085 -16.89101 -16.63231 -16.44485 -16.07370 -15.63113 -15.14658 -14.88505 -14.74831 -14.45442 -14.03509 -13.70615 -13.51698 -13.16691 -13.04276 -12.93892 -12.90325 -12.65415 -12.37431 -12.33912 -12.29923 -12.09034 -11.65721 -11.37002 -11.14538 -10.47901 -10.30936 -10.28932 -9.83647 -9.37988 -8.65671 -8.36523 -6.12708 -0.22664 0.43879 0.83817 1.32253 1.39061 1.50367 1.75895 1.94030 2.29392 2.97742 3.08221 3.13523 3.36012 3.79161 3.99149 4.03751 4.19436 4.31366 4.33769 4.42083 4.48909 4.58645 4.59852 4.65118 4.77925 4.78980 4.87228 4.89185 5.13642 5.19077 5.25772 5.32397 5.34528 5.40945 6.01364 6.19377 6.35128 6.90544 7.05727 8.73256 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.043674 B = 0.002624 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.966088 B =10669.664229 C =10929.023355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.189 3.811 3 C -0.132 4.132 4 N -0.676 5.676 5 C 0.073 3.927 6 C -0.084 4.084 7 C -0.085 4.085 8 S -0.204 6.204 9 C -0.535 4.535 10 H 0.074 0.926 11 C 0.013 3.987 12 N -0.909 5.909 13 Si 0.996 3.004 14 H -0.261 1.261 15 H -0.271 1.271 16 H -0.272 1.272 17 C 0.040 3.960 18 N -0.484 5.484 19 C 0.014 3.986 20 C -0.257 4.257 21 S 0.149 5.851 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.342 0.658 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.271 0.729 36 H 0.189 0.811 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 2.297 -27.015 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.095 3.905 3 C -0.191 4.191 4 N -0.308 5.308 5 C -0.057 4.057 6 C -0.123 4.123 7 C -0.234 4.234 8 S 0.025 5.975 9 C -0.683 4.683 10 H 0.092 0.908 11 C -0.192 4.192 12 N -0.545 5.545 13 Si 0.818 3.182 14 H -0.185 1.185 15 H -0.197 1.197 16 H -0.198 1.198 17 C -0.238 4.238 18 N -0.198 5.198 19 C -0.136 4.136 20 C -0.396 4.396 21 S 0.403 5.597 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.160 0.840 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.206 0.794 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.789 1.741 -26.644 27.127 hybrid contribution -0.704 0.755 0.683 1.238 sum -5.493 2.495 -25.961 26.653 Atomic orbital electron populations 1.22673 0.94031 1.03653 1.04671 1.19439 0.92828 0.93698 0.84559 1.21850 1.01724 0.92655 1.02897 1.60463 1.63868 1.06138 1.00310 1.21955 0.97902 0.98568 0.87275 1.21111 1.01049 0.98963 0.91159 1.23129 1.02288 1.01548 0.96470 1.84715 1.70298 1.42968 0.99534 1.23069 1.36961 1.15341 0.92894 0.90804 1.26101 0.95340 0.96831 1.00923 1.70174 1.37620 1.26983 1.19770 0.84946 0.78144 0.78053 0.77100 1.18506 1.19674 1.19763 1.27147 0.91722 1.03423 1.01526 1.66182 1.19689 1.14784 1.19178 1.22221 1.01929 0.99453 0.90020 1.27567 0.94576 1.09852 1.07561 1.83820 1.11590 1.50965 1.13365 0.89978 0.89846 0.91418 0.90770 0.92804 0.90971 0.83952 0.90223 0.93266 0.91974 0.92127 0.91853 0.91604 0.92012 0.79440 0.77805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 7.30 71.98 0.53 -2.34 16 2 C 0.19 3.74 0.93 2.78 0.00 3.75 16 3 C -0.13 -2.59 8.22 71.98 0.59 -2.00 16 4 N -0.68 -16.16 6.08 -473.89 -2.88 -19.04 16 5 C 0.07 1.82 4.90 86.31 0.42 2.24 16 6 C -0.08 -2.73 5.48 30.60 0.17 -2.56 16 7 C -0.08 -3.41 5.67 71.98 0.41 -3.00 16 8 S -0.20 -11.04 21.44 -56.49 -1.21 -12.26 16 9 C -0.53 -31.18 9.50 67.95 0.65 -30.54 16 10 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 11 C 0.01 0.73 5.49 84.86 0.47 1.20 16 12 N -0.91 -55.61 13.22 21.65 0.29 -55.32 16 13 Si 1.00 44.25 29.55 68.60 2.03 46.27 16 14 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 C 0.04 0.83 6.02 88.52 0.53 1.36 16 18 N -0.48 -11.68 10.54 -191.44 -2.02 -13.70 16 19 C 0.01 0.26 11.35 83.66 0.95 1.21 16 20 C -0.26 -3.52 11.37 66.78 0.76 -2.76 16 21 S 0.15 2.18 21.59 -56.49 -1.22 0.96 16 22 H 0.08 0.99 7.82 -2.39 -0.02 0.98 16 23 H 0.08 1.24 6.40 -2.39 -0.02 1.22 16 24 H 0.07 0.98 8.03 -2.38 -0.02 0.96 16 25 H 0.07 1.35 6.40 -2.39 -0.02 1.34 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.34 8.04 8.71 -89.69 -0.78 7.26 16 29 H 0.08 1.96 6.30 -2.39 -0.02 1.95 16 30 H 0.05 1.09 6.30 -2.39 -0.02 1.07 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 34 H 0.07 2.54 8.14 -2.40 -0.02 2.52 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -70.50 331.02 0.74 -69.76 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.28 Total: 16.78 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 5.47 Total: -33.45 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -4.61 Total: -88.07 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -2.43 Total: -11.29 kcal Total: -70.50 0.74 -69.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072519433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.984 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds