Wall clock time and date at job start Tue Mar 31 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86799 * 120.00162 * 2 1 4 4 H 1.48497 * 109.47207 * 275.31769 * 3 2 1 5 5 H 1.48507 * 109.46892 * 35.31464 * 3 2 1 6 6 H 1.48500 * 109.47015 * 155.31237 * 3 2 1 7 7 C 1.39019 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00162 * 338.70462 * 7 2 1 9 9 N 1.36877 * 119.99579 * 158.70673 * 7 2 1 10 10 C 1.34779 * 119.99922 * 119.91160 * 9 7 2 11 11 O 1.21567 * 119.99959 * 191.28727 * 10 9 7 12 12 C 1.47812 * 119.99978 * 11.28871 * 10 9 7 13 13 C 1.40001 * 120.94952 * 327.83810 * 12 10 9 14 14 C 1.37994 * 119.02514 * 179.97438 * 13 12 10 15 15 N 1.31891 * 120.98983 * 359.97438 * 14 13 12 16 16 C 1.31750 * 122.11001 * 359.97438 * 15 14 13 17 17 C 1.38480 * 120.85992 * 359.74245 * 16 15 14 18 18 F 1.35100 * 120.54489 * 180.28580 * 17 16 15 19 19 C 1.39706 * 119.99843 * 299.63277 * 9 7 2 20 20 C 1.38988 * 120.07588 * 92.78624 * 19 9 7 21 21 C 1.38083 * 119.91696 * 179.78894 * 20 19 9 22 22 C 1.38315 * 120.07980 * 0.46067 * 21 20 19 23 23 C 1.38308 * 120.16036 * 359.79197 * 22 21 20 24 24 C 1.38086 * 120.07929 * 359.97359 * 23 22 21 25 25 H 0.96998 * 120.00174 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.49289 * 359.95133 * 13 12 10 27 27 H 1.08002 * 119.51038 * 179.97438 * 14 13 12 28 28 H 1.08006 * 119.56665 * 180.02562 * 16 15 14 29 29 H 1.07995 * 120.04039 * 0.02562 * 20 19 9 30 30 H 1.07994 * 119.95944 * 180.24782 * 21 20 19 31 31 H 1.07996 * 119.91702 * 179.76330 * 22 21 20 32 32 H 1.07999 * 119.96123 * 179.97438 * 23 22 21 33 33 H 1.07998 * 120.03915 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.3828 2.1113 -1.3940 5 1 1.5057 2.6176 0.8094 6 1 3.5968 1.4103 0.5848 7 6 2.0086 -1.2040 0.0005 8 1 1.5239 -2.1072 0.3406 9 7 3.3073 -1.2446 -0.4299 10 6 4.2821 -1.6525 0.4067 11 8 5.4487 -1.4972 0.1023 12 6 3.9326 -2.2888 1.6942 13 6 2.7722 -1.9228 2.3867 14 6 2.4840 -2.5430 3.5853 15 7 3.2827 -3.4685 4.0803 16 6 4.3843 -3.8456 3.4637 17 6 4.7493 -3.2814 2.2529 18 9 5.8773 -3.6769 1.6233 19 6 3.6216 -0.8687 -1.7383 20 6 3.9906 0.4420 -2.0168 21 6 4.3048 0.8089 -3.3104 22 6 4.2434 -0.1239 -4.3299 23 6 3.8714 -1.4278 -4.0572 24 6 3.5605 -1.8030 -2.7652 25 1 -0.4850 0.8400 -0.0004 26 1 2.1123 -1.1660 1.9889 27 1 1.5911 -2.2664 4.1262 28 1 5.0084 -4.6079 3.9062 29 1 4.0353 1.1717 -1.2219 30 1 4.5955 1.8262 -3.5269 31 1 4.4859 0.1669 -5.3413 32 1 3.8241 -2.1534 -4.8558 33 1 3.2698 -2.8213 -2.5531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078098365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:32 Heat of formation + Delta-G solvation = 14.936277 kcal Electronic energy + Delta-G solvation = -22331.207764 eV Core-core repulsion = 18851.747709 eV Total energy + Delta-G solvation = -3479.460056 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.53813 -40.23999 -39.18809 -37.64804 -35.16700 -32.45264 -32.18252 -30.53542 -30.46398 -29.16512 -25.51523 -24.35403 -23.09091 -22.24068 -21.88115 -19.79624 -18.47095 -17.34046 -16.93340 -16.58735 -16.00009 -15.77355 -15.53826 -15.15783 -14.82300 -14.11706 -13.91482 -13.62837 -13.57108 -13.22638 -13.07116 -12.93098 -12.63849 -12.59232 -12.09050 -11.67515 -11.25683 -11.17033 -11.00128 -10.77342 -9.88753 -9.72290 -9.47483 -9.34642 -8.86125 -8.61241 -8.39613 -8.17030 -7.95582 -6.77404 -4.60910 1.10713 1.36158 1.83546 1.87498 2.94423 3.08589 3.11869 3.38728 3.84255 3.94588 4.13696 4.26022 4.39946 4.60364 4.72851 5.14939 5.23396 5.28207 5.34799 5.37341 5.51343 5.85001 5.91642 6.01888 6.03833 6.21086 6.30091 6.45686 6.61844 6.78889 6.91419 6.99647 7.06580 7.18434 7.46215 7.84800 7.96574 8.10113 8.60345 8.90011 9.29731 10.27700 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.007789 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.717410 B = 3593.987548 C = 4620.492905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.087 3.913 3 Si 0.861 3.139 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.367 4.367 8 H 0.106 0.894 9 N -0.433 5.433 10 C 0.541 3.459 11 O -0.554 6.554 12 C -0.100 4.100 13 C -0.086 4.086 14 C 0.063 3.937 15 N -0.454 5.454 16 C 0.049 3.951 17 C 0.086 3.914 18 F -0.120 7.120 19 C 0.175 3.825 20 C -0.134 4.134 21 C -0.113 4.113 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.112 4.112 25 H 0.281 0.719 26 H 0.191 0.809 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 -1.430 -0.327 3.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.126 4.126 3 Si 0.687 3.313 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.123 0.877 9 N -0.153 5.153 10 C 0.331 3.669 11 O -0.434 6.434 12 C -0.112 4.112 13 C -0.105 4.105 14 C -0.093 4.093 15 N -0.163 5.163 16 C -0.110 4.110 17 C 0.063 3.937 18 F -0.099 7.099 19 C 0.086 3.914 20 C -0.153 4.153 21 C -0.132 4.132 22 C -0.153 4.153 23 C -0.133 4.133 24 C -0.131 4.131 25 H 0.092 0.908 26 H 0.208 0.792 27 H 0.181 0.819 28 H 0.181 0.819 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.548 -1.647 0.277 3.922 hybrid contribution 0.509 1.217 -0.942 1.621 sum 4.057 -0.431 -0.665 4.134 Atomic orbital electron populations 1.69746 1.06291 1.28963 1.41735 1.25505 0.94969 0.98691 0.93407 0.87228 0.80519 0.83873 0.79641 1.18384 1.21024 1.18465 1.18892 0.85730 0.96625 1.48009 0.87656 1.40874 1.07352 1.60769 1.06308 1.18397 0.85188 0.80153 0.83161 1.90728 1.19054 1.57797 1.75835 1.20471 0.96086 0.97390 0.97216 1.23697 0.94403 0.99862 0.92542 1.22882 0.98972 0.93402 0.94056 1.67480 1.03026 1.12545 1.33233 1.22644 0.95799 1.01102 0.91424 1.18957 0.84645 0.96583 0.93508 1.91535 1.47673 1.89089 1.81573 1.17823 0.95447 0.92089 0.86068 1.21567 1.00379 0.96001 0.97308 1.20876 1.00540 0.99256 0.92502 1.20993 1.02034 0.93664 0.98598 1.20933 1.00178 0.96212 0.96018 1.21266 0.99990 0.99429 0.92407 0.90822 0.79235 0.81888 0.81928 0.86592 0.86463 0.86462 0.86215 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.89 13.95 55.50 0.77 -20.12 16 2 C 0.09 2.10 4.86 -17.47 -0.08 2.01 16 3 Si 0.86 19.27 23.78 -169.99 -4.04 15.22 16 4 H -0.26 -5.68 6.24 56.52 0.35 -5.33 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -6.04 6.77 56.52 0.38 -5.65 16 7 C -0.37 -8.79 6.06 -15.01 -0.09 -8.89 16 8 H 0.11 2.62 7.19 -52.49 -0.38 2.24 16 9 N -0.43 -10.24 1.79 -59.99 -0.11 -10.35 16 10 C 0.54 12.89 7.30 -12.34 -0.09 12.80 16 11 O -0.55 -14.39 16.12 5.31 0.09 -14.31 16 12 C -0.10 -2.09 5.67 -104.60 -0.59 -2.68 16 13 C -0.09 -1.62 8.18 -39.01 -0.32 -1.94 16 14 C 0.06 1.03 11.17 -17.62 -0.20 0.83 16 15 N -0.45 -7.47 10.33 -13.26 -0.14 -7.60 16 16 C 0.05 0.79 11.17 -17.50 -0.20 0.59 16 17 C 0.09 1.62 7.30 -38.77 -0.28 1.34 16 18 F -0.12 -2.37 16.20 2.25 0.04 -2.34 16 19 C 0.18 3.98 4.09 -83.72 -0.34 3.64 16 20 C -0.13 -2.90 7.29 -39.36 -0.29 -3.19 16 21 C -0.11 -2.05 10.04 -39.61 -0.40 -2.44 16 22 C -0.13 -2.18 10.04 -39.53 -0.40 -2.58 16 23 C -0.11 -1.93 10.04 -39.61 -0.40 -2.33 16 24 C -0.11 -2.24 9.97 -39.36 -0.39 -2.64 16 25 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.19 3.85 4.85 -52.49 -0.25 3.59 16 27 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 28 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 29 H 0.12 2.60 3.85 -52.49 -0.20 2.40 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 288.02 15.07 4.34 4.34 Total: -1.00 -28.39 288.02 -5.69 -34.08 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -2.57 Total: 6.53 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.07 Total: -5.46 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.53 Total: -38.07 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.31 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.04 Total: 15.22 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.39 -5.69 -34.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078098365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.020 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds