Wall clock time and date at job start Tue Mar 31 2020 05:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86799 * 120.00162 * 2 1 4 4 H 1.48497 * 109.47207 * 275.31769 * 3 2 1 5 5 H 1.48507 * 109.46892 * 35.31464 * 3 2 1 6 6 H 1.48500 * 109.47015 * 155.31237 * 3 2 1 7 7 C 1.39019 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00162 * 338.70462 * 7 2 1 9 9 N 1.36877 * 119.99579 * 158.70673 * 7 2 1 10 10 C 1.34779 * 119.99922 * 119.91160 * 9 7 2 11 11 O 1.21567 * 119.99959 * 191.28727 * 10 9 7 12 12 C 1.47812 * 119.99978 * 11.28871 * 10 9 7 13 13 C 1.40001 * 120.94952 * 327.83810 * 12 10 9 14 14 C 1.37994 * 119.02514 * 179.97438 * 13 12 10 15 15 N 1.31891 * 120.98983 * 359.97438 * 14 13 12 16 16 C 1.31750 * 122.11001 * 359.97438 * 15 14 13 17 17 C 1.38480 * 120.85992 * 359.74245 * 16 15 14 18 18 F 1.35100 * 120.54489 * 180.28580 * 17 16 15 19 19 C 1.39706 * 119.99843 * 299.63277 * 9 7 2 20 20 C 1.38988 * 120.07588 * 92.78624 * 19 9 7 21 21 C 1.38083 * 119.91696 * 179.78894 * 20 19 9 22 22 C 1.38315 * 120.07980 * 0.46067 * 21 20 19 23 23 C 1.38308 * 120.16036 * 359.79197 * 22 21 20 24 24 C 1.38086 * 120.07929 * 359.97359 * 23 22 21 25 25 H 0.96998 * 120.00174 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.49289 * 359.95133 * 13 12 10 27 27 H 1.08002 * 119.51038 * 179.97438 * 14 13 12 28 28 H 1.08006 * 119.56665 * 180.02562 * 16 15 14 29 29 H 1.07995 * 120.04039 * 0.02562 * 20 19 9 30 30 H 1.07994 * 119.95944 * 180.24782 * 21 20 19 31 31 H 1.07996 * 119.91702 * 179.76330 * 22 21 20 32 32 H 1.07999 * 119.96123 * 179.97438 * 23 22 21 33 33 H 1.07998 * 120.03915 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.3828 2.1113 -1.3940 5 1 1.5057 2.6176 0.8094 6 1 3.5968 1.4103 0.5848 7 6 2.0086 -1.2040 0.0005 8 1 1.5239 -2.1072 0.3406 9 7 3.3073 -1.2446 -0.4299 10 6 4.2821 -1.6525 0.4067 11 8 5.4487 -1.4972 0.1023 12 6 3.9326 -2.2888 1.6942 13 6 2.7722 -1.9228 2.3867 14 6 2.4840 -2.5430 3.5853 15 7 3.2827 -3.4685 4.0803 16 6 4.3843 -3.8456 3.4637 17 6 4.7493 -3.2814 2.2529 18 9 5.8773 -3.6769 1.6233 19 6 3.6216 -0.8687 -1.7383 20 6 3.9906 0.4420 -2.0168 21 6 4.3048 0.8089 -3.3104 22 6 4.2434 -0.1239 -4.3299 23 6 3.8714 -1.4278 -4.0572 24 6 3.5605 -1.8030 -2.7652 25 1 -0.4850 0.8400 -0.0004 26 1 2.1123 -1.1660 1.9889 27 1 1.5911 -2.2664 4.1262 28 1 5.0084 -4.6079 3.9062 29 1 4.0353 1.1717 -1.2219 30 1 4.5955 1.8262 -3.5269 31 1 4.4859 0.1669 -5.3413 32 1 3.8241 -2.1534 -4.8558 33 1 3.2698 -2.8213 -2.5531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078098365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:31 Heat of formation + Delta-G solvation = -1.817673 kcal Electronic energy + Delta-G solvation = -22331.934270 eV Core-core repulsion = 18851.747709 eV Total energy + Delta-G solvation = -3480.186561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.04133 -41.87420 -40.64003 -39.23565 -36.95917 -34.26941 -33.70744 -31.99115 -31.86591 -30.68863 -27.33024 -25.91593 -24.53280 -23.71034 -23.36650 -21.48321 -20.19200 -18.87990 -18.43480 -18.09714 -17.65450 -17.35424 -17.12563 -16.73124 -16.41440 -15.78122 -15.37590 -15.23259 -15.03725 -14.83741 -14.59508 -14.37756 -14.32589 -14.24126 -13.62060 -13.13699 -13.00830 -12.74515 -12.63954 -12.32028 -11.60573 -11.49364 -11.14668 -10.87679 -10.53298 -10.03223 -9.87521 -9.75147 -9.66771 -8.66473 -6.49600 -0.41516 -0.03596 0.35545 0.40446 1.13466 1.24090 1.30543 1.66546 2.08323 2.24684 2.57993 2.72702 2.88445 2.96052 3.43345 3.64099 3.77176 3.85621 3.87886 4.01177 4.19205 4.48622 4.50850 4.60446 4.61156 4.73090 4.87527 5.02739 5.14248 5.34899 5.47361 5.50308 5.57461 5.60890 5.90404 5.98164 6.19013 6.72316 6.74083 7.05880 7.48881 8.42110 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.007789 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.717410 B = 3593.987548 C = 4620.492905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.252 1.252 5 H -0.275 1.275 6 H -0.283 1.283 7 C -0.358 4.358 8 H 0.090 0.910 9 N -0.435 5.435 10 C 0.530 3.470 11 O -0.588 6.588 12 C -0.126 4.126 13 C -0.096 4.096 14 C 0.081 3.919 15 N -0.451 5.451 16 C 0.072 3.928 17 C 0.070 3.930 18 F -0.129 7.129 19 C 0.132 3.868 20 C -0.166 4.166 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.105 4.105 24 C -0.134 4.134 25 H 0.287 0.713 26 H 0.173 0.827 27 H 0.198 0.802 28 H 0.205 0.795 29 H 0.098 0.902 30 H 0.147 0.853 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -1.670 -1.068 4.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.484 4.484 8 H 0.107 0.893 9 N -0.154 5.154 10 C 0.321 3.679 11 O -0.471 6.471 12 C -0.138 4.138 13 C -0.116 4.116 14 C -0.075 4.075 15 N -0.160 5.160 16 C -0.086 4.086 17 C 0.047 3.953 18 F -0.108 7.108 19 C 0.043 3.957 20 C -0.185 4.185 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.123 4.123 24 C -0.153 4.153 25 H 0.097 0.903 26 H 0.190 0.810 27 H 0.215 0.785 28 H 0.221 0.779 29 H 0.116 0.884 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.679 -1.879 -0.473 4.158 hybrid contribution 0.513 1.228 -0.756 1.530 sum 4.192 -0.652 -1.229 4.417 Atomic orbital electron populations 1.69764 1.06870 1.29707 1.43244 1.25744 0.95202 1.00004 0.93310 0.86620 0.78530 0.82285 0.79799 1.17699 1.20081 1.20962 1.18694 0.85729 0.96104 1.47834 0.89266 1.40977 1.07015 1.60293 1.07109 1.18914 0.84867 0.79955 0.84153 1.90670 1.20131 1.59403 1.76936 1.20514 0.97770 0.98851 0.96658 1.23486 0.93874 1.00327 0.93869 1.23319 0.99490 0.91956 0.92722 1.67665 1.03097 1.12344 1.32851 1.23234 0.95427 1.00344 0.89622 1.19195 0.84477 0.97002 0.94589 1.91505 1.48117 1.89169 1.81990 1.18216 0.98042 0.93405 0.86010 1.21639 1.02690 0.95432 0.98737 1.21318 0.99322 1.01331 0.91398 1.21550 0.99413 0.92645 1.00241 1.21426 0.97845 0.97612 0.95385 1.21455 1.01210 0.99042 0.93616 0.90290 0.80993 0.78493 0.77874 0.88411 0.83484 0.81596 0.82139 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.81 13.95 21.67 0.30 -43.50 16 2 C 0.07 3.35 4.86 84.95 0.41 3.76 16 3 Si 0.90 40.86 23.78 68.60 1.63 42.49 16 4 H -0.25 -11.04 6.24 99.48 0.62 -10.42 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.28 -13.79 6.77 99.48 0.67 -13.12 16 7 C -0.36 -17.84 6.06 84.09 0.51 -17.33 16 8 H 0.09 4.66 7.19 -2.91 -0.02 4.64 16 9 N -0.43 -21.49 1.79 -461.97 -0.83 -22.32 16 10 C 0.53 26.50 7.30 86.78 0.63 27.14 16 11 O -0.59 -32.13 16.12 -3.93 -0.06 -32.19 16 12 C -0.13 -5.44 5.67 -19.85 -0.11 -5.56 16 13 C -0.10 -3.68 8.18 22.64 0.19 -3.49 16 14 C 0.08 2.51 11.17 84.63 0.94 3.45 16 15 N -0.45 -13.72 10.33 -195.85 -2.02 -15.74 16 16 C 0.07 2.16 11.17 84.76 0.95 3.11 16 17 C 0.07 2.64 7.30 22.79 0.17 2.81 16 18 F -0.13 -5.17 16.20 44.97 0.73 -4.44 16 19 C 0.13 6.17 4.09 38.24 0.16 6.33 16 20 C -0.17 -7.28 7.29 22.41 0.16 -7.12 16 21 C -0.12 -3.94 10.04 22.25 0.22 -3.72 16 22 C -0.12 -3.45 10.04 22.30 0.22 -3.22 16 23 C -0.10 -3.23 10.04 22.25 0.22 -3.00 16 24 C -0.13 -5.40 9.97 22.41 0.22 -5.17 16 25 H 0.29 13.54 8.31 -92.71 -0.77 12.77 16 26 H 0.17 7.26 4.85 -2.91 -0.01 7.25 16 27 H 0.20 4.67 8.06 -2.91 -0.02 4.65 16 28 H 0.20 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.10 4.53 3.85 -2.91 -0.01 4.52 16 30 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 31 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -64.60 288.02 5.69 -58.91 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 1.04 Total: 18.82 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 4.90 Total: -2.02 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.55 Total: -81.57 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.06 Total: -32.19 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.73 Total: -4.44 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.63 Total: 42.49 kcal Total: -64.60 5.69 -58.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078098365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.090 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds