Wall clock time and date at job start Tue Mar 31 2020 06:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 N 1.46908 * 109.47148 * 90.00134 * 6 5 4 8 8 C 1.46897 * 110.99334 * 66.04654 * 7 6 5 9 9 C 1.46890 * 111.00045 * 190.00045 * 7 6 5 10 10 C 1.53001 * 109.47092 * 169.99936 * 9 7 6 11 11 C 1.53002 * 109.47260 * 179.97438 * 10 9 7 12 12 S 1.81001 * 109.47120 * 180.02562 * 11 10 9 13 13 C 1.76201 * 99.99926 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99881 * 359.97438 * 13 12 11 15 15 C 1.38801 * 119.99921 * 180.02562 * 13 12 11 16 16 N 1.31627 * 119.99887 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99744 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47375 * 89.99685 * 17 15 13 19 19 H 1.48498 * 109.46931 * 209.99447 * 17 15 13 20 20 H 1.48502 * 109.47406 * 329.99271 * 17 15 13 21 21 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 23 23 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 24 24 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 25 25 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 26 26 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 27 27 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 28 28 H 1.08995 * 109.47315 * 60.00319 * 8 7 6 29 29 H 1.09002 * 109.46406 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47077 * 299.99733 * 8 7 6 31 31 H 1.09000 * 109.47308 * 290.00289 * 9 7 6 32 32 H 1.09006 * 109.47566 * 50.00141 * 9 7 6 33 33 H 1.09000 * 109.47333 * 300.00338 * 10 9 7 34 34 H 1.09005 * 109.46980 * 60.00448 * 10 9 7 35 35 H 1.09000 * 109.47314 * 300.00460 * 11 10 9 36 36 H 1.09000 * 109.47019 * 60.00063 * 11 10 9 37 37 H 0.97000 * 119.99775 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8196 -1.0615 1.3847 8 6 5.0749 -2.1284 2.0665 9 6 7.2655 -1.3162 1.4308 10 6 7.7523 -1.2316 2.8788 11 6 9.2582 -1.4976 2.9270 12 16 9.8339 -1.3982 4.6402 13 6 11.5478 -1.7343 4.4070 14 1 11.9312 -1.9214 3.4148 15 6 12.4048 -1.7598 5.4985 16 7 11.9373 -1.5323 6.7077 17 14 14.2218 -2.1154 5.2511 18 1 14.9493 -0.8409 5.0243 19 1 14.7639 -2.7863 6.4599 20 1 14.3968 -3.0018 4.0726 21 16 2.4856 -1.4020 -0.0006 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 4.2532 1.7001 0.0038 26 1 5.4058 -1.8594 -0.5143 27 1 5.9950 -0.1798 -0.5142 28 1 5.2216 -3.0696 1.5367 29 1 5.4366 -2.2269 3.0900 30 1 4.0136 -1.8801 2.0789 31 1 7.4719 -2.3109 1.0356 32 1 7.7852 -0.5710 0.8286 33 1 7.5458 -0.2370 3.2741 34 1 7.2326 -1.9769 3.4810 35 1 9.4643 -2.4924 2.5320 36 1 9.7782 -0.7526 2.3248 37 1 12.5363 -1.5497 7.4705 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080631454.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:47 Heat of formation + Delta-G solvation = 12.554492 kcal Electronic energy + Delta-G solvation = -17135.646472 eV Core-core repulsion = 14357.740262 eV Total energy + Delta-G solvation = -2777.906210 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71488 -38.89611 -34.78968 -34.56906 -32.96549 -30.38408 -28.26734 -27.76351 -26.76398 -24.87003 -23.46776 -21.82549 -20.17521 -19.56343 -18.97486 -17.07830 -16.89481 -16.77232 -16.25953 -16.04794 -15.66149 -15.36903 -15.30434 -14.69005 -14.41903 -13.92459 -13.66440 -13.48676 -13.33509 -13.23627 -13.02366 -12.96803 -12.89421 -12.66091 -12.47165 -12.31707 -12.04703 -11.63082 -11.38153 -11.13933 -10.61365 -10.31187 -10.23412 -9.71586 -9.34740 -8.66576 -8.37095 -6.13446 -0.28697 0.37259 0.76362 1.31523 1.39601 1.48917 1.73998 1.85178 2.28750 2.96853 2.97082 3.28515 3.33637 3.79588 3.97648 4.04576 4.17231 4.22581 4.28793 4.41625 4.49122 4.57952 4.62555 4.65896 4.67360 4.72567 4.81607 4.85992 5.00159 5.03730 5.18460 5.27133 5.32430 5.39910 5.98031 5.99794 6.18360 6.77942 7.05002 8.72320 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.054478 B = 0.002389 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.843408 B =11718.042800 C =11789.172094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.037 3.963 3 N -0.507 5.507 4 C 0.040 3.960 5 C -0.221 4.221 6 C 0.133 3.867 7 N -0.547 5.547 8 C 0.016 3.984 9 C 0.072 3.928 10 C -0.083 4.083 11 C -0.086 4.086 12 S -0.202 6.202 13 C -0.536 4.536 14 H 0.074 0.926 15 C 0.013 3.987 16 N -0.908 5.908 17 Si 0.995 3.005 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.262 1.262 21 S 0.136 5.864 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.180 0.820 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.893 -0.789 -17.091 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.241 4.241 3 N -0.223 5.223 4 C -0.111 4.111 5 C -0.342 4.342 6 C 0.004 3.996 7 N -0.272 5.272 8 C -0.132 4.132 9 C -0.057 4.057 10 C -0.122 4.122 11 C -0.235 4.235 12 S 0.026 5.974 13 C -0.684 4.684 14 H 0.092 0.908 15 C -0.192 4.192 16 N -0.544 5.544 17 Si 0.817 3.183 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.186 1.186 21 S 0.391 5.609 22 H 0.115 0.885 23 H 0.110 0.890 24 H 0.120 0.880 25 H 0.197 0.803 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.005 -0.677 -15.700 27.040 hybrid contribution 2.575 -0.283 -1.115 2.821 sum -19.429 -0.960 -16.816 25.714 Atomic orbital electron populations 1.20621 0.83037 1.05318 1.04948 1.27664 1.03231 0.90935 1.02225 1.66339 1.05497 1.32788 1.17686 1.21874 0.91036 0.96626 1.01539 1.25883 0.99845 0.96293 1.12185 1.20471 0.88702 1.01061 0.89387 1.61931 1.04128 1.45721 1.15383 1.22542 0.98949 0.92083 0.99647 1.22021 0.86847 1.00730 0.96117 1.21165 0.91580 1.02301 0.97112 1.23144 0.99240 1.02883 0.98269 1.84694 1.09636 1.93434 1.09620 1.23039 0.93119 1.55754 0.96518 0.90819 1.26097 1.04811 0.94215 0.94057 1.70162 1.37627 1.47297 0.99364 0.84998 0.76266 0.78788 0.78245 1.19291 1.19977 1.18632 1.83835 0.97127 1.11875 1.68085 0.88518 0.89033 0.88015 0.80263 0.92524 0.87372 0.94588 0.91385 0.91290 0.93828 0.89456 0.91815 0.91984 0.91897 0.91666 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.46 71.24 0.75 -0.05 16 2 C 0.04 0.65 7.39 88.52 0.65 1.31 16 3 N -0.51 -11.56 10.54 -191.44 -2.02 -13.58 16 4 C 0.04 0.86 11.25 83.66 0.94 1.81 16 5 C -0.22 -4.27 5.31 24.64 0.13 -4.14 16 6 C 0.13 2.41 5.50 85.56 0.47 2.88 16 7 N -0.55 -12.31 4.75 -927.06 -4.41 -16.72 16 8 C 0.02 0.35 9.12 127.69 1.16 1.51 16 9 C 0.07 1.73 4.96 86.31 0.43 2.16 16 10 C -0.08 -2.64 5.15 30.60 0.16 -2.48 16 11 C -0.09 -3.41 5.67 71.98 0.41 -3.00 16 12 S -0.20 -10.88 21.44 -56.49 -1.21 -12.09 16 13 C -0.54 -31.12 9.50 67.95 0.65 -30.48 16 14 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 15 C 0.01 0.74 5.49 84.86 0.47 1.21 16 16 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 17 Si 1.00 44.04 29.55 68.60 2.03 46.07 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 21 S 0.14 2.22 21.82 -56.49 -1.23 0.98 16 22 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 24 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.18 3.46 8.06 -2.91 -0.02 3.43 16 26 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 27 H 0.11 1.70 7.93 -2.38 -0.02 1.68 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 1.63 6.30 -2.39 -0.02 1.62 16 30 H 0.07 1.43 6.12 -2.39 -0.01 1.41 16 31 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 32 H 0.09 1.93 7.93 -2.38 -0.02 1.91 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 2.03 6.47 -2.38 -0.02 2.01 16 35 H 0.06 2.43 8.14 -2.40 -0.02 2.41 16 36 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -69.87 334.61 0.70 -69.17 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.05 Total: 10.43 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 6.21 Total: -29.27 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -6.14 Total: -85.29 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -2.44 Total: -11.10 kcal Total: -69.87 0.70 -69.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080631454.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.724 kcal (2) G-P(sol) polarization free energy of solvation -69.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds