Wall clock time and date at job start Tue Mar 31 2020 06:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46821 * 2 1 4 4 C 1.46506 * 120.00239 * 269.99605 * 3 2 1 5 5 C 1.50698 * 109.47466 * 270.00463 * 4 3 2 6 6 H 1.08003 * 119.99922 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99976 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00140 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99974 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46948 * 60.00279 * 9 7 5 11 11 H 1.48495 * 109.47067 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46862 * 300.00394 * 9 7 5 13 13 C 1.34777 * 120.00225 * 90.00053 * 3 2 1 14 14 O 1.21289 * 120.00142 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99940 * 0.02562 * 13 3 2 16 16 C 1.50703 * 109.47425 * 180.02562 * 15 13 3 17 17 C 1.41281 * 128.01149 * 270.00195 * 16 15 13 18 18 C 1.50693 * 126.78764 * 0.04527 * 17 16 15 19 19 N 1.30213 * 106.41930 * 180.02562 * 17 16 15 20 20 O 1.20923 * 111.64864 * 359.97438 * 19 17 16 21 21 C 1.34061 * 111.55027 * 0.02562 * 20 19 17 22 22 Cl 1.73600 * 126.79752 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.46804 * 299.99967 * 1 2 3 24 24 H 1.08993 * 109.46956 * 60.00138 * 1 2 3 25 25 H 1.08998 * 109.46449 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47522 * 239.99960 * 2 1 3 27 27 H 1.09001 * 109.47450 * 119.99522 * 2 1 3 28 28 H 1.09000 * 109.46471 * 30.00216 * 4 3 2 29 29 H 1.08999 * 109.47223 * 149.99943 * 4 3 2 30 30 H 0.97001 * 119.99935 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47508 * 59.99761 * 15 13 3 32 32 H 1.09007 * 109.46851 * 299.99849 * 15 13 3 33 33 H 1.08997 * 109.47781 * 269.98439 * 18 17 16 34 34 H 1.09000 * 109.47426 * 29.99490 * 18 17 16 35 35 H 1.09005 * 109.46928 * 149.98738 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9135 2.0969 -3.4169 10 1 6.1417 0.6403 -3.5937 11 1 6.1610 2.7969 -4.7029 12 1 6.8406 2.6212 -2.3820 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1600 1.1672 15 6 1.9924 1.3061 2.4723 16 6 2.3180 2.2296 3.6177 17 6 3.5559 2.3927 4.2790 18 6 4.8422 1.6676 3.9780 19 7 3.3654 3.2936 5.1997 20 8 2.2253 3.6965 5.2005 21 6 1.4905 3.0970 4.2530 22 17 -0.1879 3.3750 3.9076 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.5817 1.6877 -2.0284 29 1 2.0955 3.1411 -1.1384 30 1 3.6752 3.5164 -4.4439 31 1 2.6229 0.4188 2.5299 32 1 0.9445 1.0115 2.5302 33 1 4.8931 0.7557 4.5729 34 1 4.8764 1.4129 2.9188 35 1 5.6876 2.3100 4.2247 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084408647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:26 Heat of formation + Delta-G solvation = 17.928874 kcal Electronic energy + Delta-G solvation = -20783.630239 eV Core-core repulsion = 17425.327407 eV Total energy + Delta-G solvation = -3358.302831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.99279 -39.17662 -37.20992 -35.58971 -35.03165 -32.90904 -32.24521 -30.14158 -29.21639 -28.60449 -26.70303 -23.22798 -22.99356 -21.66218 -21.36525 -18.52980 -17.80066 -17.58500 -16.57111 -16.26100 -15.62339 -15.44719 -14.55956 -14.17998 -13.69599 -13.43077 -13.37598 -13.08859 -12.99171 -12.65027 -12.57999 -12.41021 -12.07497 -11.96525 -11.83157 -11.55203 -11.20660 -10.95623 -10.89810 -10.72612 -10.54267 -10.15771 -9.94555 -9.67812 -9.31994 -8.85156 -8.45105 -7.70950 -6.06160 -4.11112 1.05405 1.28435 2.10741 3.29609 3.32607 3.35018 3.39175 3.60227 3.92376 4.08097 4.42952 4.58537 4.85159 4.95945 5.11399 5.27187 5.29560 5.43382 5.46910 5.53796 5.63093 5.69076 5.69797 5.79543 6.00530 6.10740 6.19854 6.45223 7.03435 7.42385 7.50828 7.89812 8.09729 8.21119 8.36834 8.86927 9.04225 9.53991 11.01930 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.005224 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.591861 B = 5359.054938 C = 6060.334990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.532 6.532 15 C -0.071 4.071 16 C -0.139 4.139 17 C 0.046 3.954 18 C -0.078 4.078 19 N -0.352 5.352 20 O 0.106 5.894 21 C 0.008 3.992 22 Cl 0.045 6.955 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 -7.393 14.234 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.328 5.328 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.408 6.408 15 C -0.112 4.112 16 C -0.144 4.144 17 C -0.113 4.113 18 C -0.136 4.136 19 N -0.059 5.059 20 O 0.040 5.960 21 C -0.082 4.082 22 Cl 0.073 6.927 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.172 -6.078 14.913 16.914 hybrid contribution 0.351 -0.482 -1.082 1.235 sum -4.821 -6.560 13.831 16.048 Atomic orbital electron populations 1.22232 0.96760 1.01489 1.02393 1.21450 0.93571 0.84170 1.02774 1.48243 1.63709 1.13260 1.07563 1.19269 0.96259 0.93641 0.77987 1.21378 0.96904 1.32042 1.06249 0.92534 1.24927 0.97796 0.94914 0.96410 1.69917 1.35735 1.33313 1.14364 0.86578 0.84849 0.78240 0.77874 1.20228 1.21169 1.20208 1.19992 0.79074 0.87006 0.84594 1.90707 1.45266 1.17866 1.86996 1.20150 1.04096 0.97190 0.89749 1.20224 0.92066 1.01753 1.00333 1.23233 0.97534 0.96883 0.93629 1.20235 0.90649 0.99107 1.03564 1.73878 0.95831 1.14260 1.21908 1.84864 1.15249 1.51228 1.44656 1.24390 0.89575 0.98456 0.95800 1.98438 1.06039 1.95728 1.92506 0.93058 0.91970 0.92085 0.89796 0.91703 0.94970 0.93915 0.92646 0.87496 0.87873 0.89939 0.89327 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.53 5.93 -4.04 -0.02 1.51 16 3 N -0.60 -11.90 2.46 -175.05 -0.43 -12.33 16 4 C 0.25 6.29 5.16 -5.19 -0.03 6.26 16 5 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.51 10.03 7.67 -10.99 -0.08 9.95 16 14 O -0.53 -13.13 15.61 5.55 0.09 -13.04 16 15 C -0.07 -1.01 4.65 -29.04 -0.14 -1.14 16 16 C -0.14 -2.11 4.82 -104.38 -0.50 -2.61 16 17 C 0.05 0.70 7.32 -82.13 -0.60 0.09 16 18 C -0.08 -0.95 10.39 36.00 0.37 -0.58 16 19 N -0.35 -5.65 12.07 33.44 0.40 -5.25 16 20 O 0.11 1.65 11.20 17.12 0.19 1.84 16 21 C 0.01 0.12 8.12 29.82 0.24 0.36 16 22 Cl 0.04 0.56 29.23 -51.86 -1.52 -0.95 16 23 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 27 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.11 1.22 7.40 -51.93 -0.38 0.84 16 32 H 0.10 1.21 7.19 -51.93 -0.37 0.83 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -33.13 322.50 -5.84 -38.97 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -4.35 Total: -3.89 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.80 Total: -1.13 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.71 Total: -43.18 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.28 Total: -11.21 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: 0.56 SS G_CDS: -1.52 Total: -0.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.13 -5.84 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.897 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds