Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30209 * 126.79269 * 2 1 4 4 O 1.20915 * 111.64885 * 180.28904 * 3 2 1 5 5 C 1.34069 * 111.55038 * 359.70593 * 4 3 2 6 6 Cl 1.73604 * 126.79768 * 180.02562 * 5 4 3 7 7 C 1.35674 * 106.40802 * 359.97438 * 5 4 3 8 8 C 1.50695 * 128.01698 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47377 * 90.02270 * 8 7 5 10 10 O 1.21282 * 119.99614 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00126 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99838 * 0.02562 * 11 9 8 13 13 C 1.46500 * 120.00007 * 180.02562 * 11 9 8 14 14 H 1.09001 * 109.47297 * 0.02562 * 13 11 9 15 15 C 1.53006 * 109.46998 * 240.00425 * 13 11 9 16 16 C 1.50698 * 109.46840 * 120.00599 * 13 11 9 17 17 H 1.07993 * 120.00472 * 0.02562 * 16 13 11 18 18 C 1.37882 * 119.99554 * 180.02562 * 16 13 11 19 19 N 1.31515 * 120.00420 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99716 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47049 * 89.99950 * 20 18 16 22 22 H 1.48499 * 109.47170 * 209.99777 * 20 18 16 23 23 H 1.48502 * 109.47245 * 329.99617 * 20 18 16 24 24 H 1.08997 * 109.46758 * 270.19977 * 1 2 3 25 25 H 1.08997 * 109.46953 * 30.19632 * 1 2 3 26 26 H 1.08995 * 109.46748 * 150.19709 * 1 2 3 27 27 H 1.09002 * 109.47241 * 330.02611 * 8 7 5 28 28 H 1.08996 * 109.47235 * 210.03054 * 8 7 5 29 29 H 1.08999 * 109.46748 * 269.99069 * 12 11 9 30 30 H 1.08997 * 109.47257 * 29.99586 * 12 11 9 31 31 H 1.09002 * 109.46769 * 149.99443 * 12 11 9 32 32 H 1.09001 * 109.47002 * 179.97438 * 15 13 11 33 33 H 1.08993 * 109.46955 * 300.00226 * 15 13 11 34 34 H 1.09000 * 109.47050 * 60.00054 * 15 13 11 35 35 H 0.97001 * 120.00306 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0427 0.0000 4 8 3.4541 0.7269 -0.0057 5 6 3.6037 -0.6055 -0.0039 6 17 5.1012 -1.4837 -0.0096 7 6 2.3531 -1.1315 0.0044 8 6 1.9580 -2.5858 0.0101 9 6 1.8337 -3.0670 1.4328 10 8 2.0448 -2.3040 2.3517 11 7 1.4871 -4.3449 1.6841 12 6 1.2316 -5.2664 0.5741 13 6 1.3658 -4.8126 3.0671 14 1 1.5913 -3.9927 3.7491 15 6 2.3494 -5.9602 3.3056 16 6 -0.0401 -5.2969 3.3121 17 1 -0.7700 -5.2605 2.5170 18 6 -0.3944 -5.7866 4.5514 19 7 0.4946 -5.8315 5.5195 20 14 -2.1372 -6.3863 4.8552 21 1 -2.2260 -7.8333 4.5334 22 1 -2.4922 -6.1737 6.2814 23 1 -3.0789 -5.6286 3.9925 24 1 -0.3633 0.0036 1.0276 25 1 -0.3633 0.8882 -0.5169 26 1 -0.3633 -0.8917 -0.5108 27 1 2.7189 -3.1711 -0.5062 28 1 1.0013 -2.7043 -0.4985 29 1 0.1766 -5.2252 0.3033 30 1 1.8387 -4.9785 -0.2841 31 1 1.4895 -6.2811 0.8776 32 1 2.2594 -6.3078 4.3348 33 1 2.1235 -6.7799 2.6237 34 1 3.3662 -5.6098 3.1284 35 1 0.2455 -6.1764 6.3912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = 3.783110 kcal Electronic energy + Delta-G solvation = -20787.983895 eV Core-core repulsion = 17429.067657 eV Total energy + Delta-G solvation = -3358.916238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.13818 -40.72601 -38.28457 -37.24621 -36.29633 -34.80045 -33.49558 -31.62002 -29.90750 -29.25002 -27.52739 -27.23368 -24.01791 -22.60852 -22.33121 -19.97833 -18.98680 -18.77187 -18.45853 -17.80533 -17.03754 -16.70798 -16.25823 -15.88516 -14.85678 -14.69567 -14.34332 -14.32343 -14.10223 -13.97020 -13.65278 -13.47309 -13.41683 -13.11498 -13.04971 -12.90055 -12.76954 -12.62611 -12.55129 -12.15411 -12.10854 -11.95976 -11.17273 -11.09092 -10.71682 -10.49135 -10.20847 -9.28083 -8.11837 -6.28192 -0.05862 0.14708 0.96659 1.43247 1.45006 1.54396 1.83487 2.34511 2.47224 2.60725 2.99523 3.16508 3.48927 3.74827 3.76246 3.99751 4.37708 4.47737 4.56692 4.62833 4.69180 4.75628 4.77454 4.87653 4.92115 5.09317 5.13191 5.15579 5.50355 5.66192 5.71069 6.07088 6.19562 6.80749 6.87382 6.95515 7.35622 7.52179 8.92315 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.004703 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.357678 B = 5951.868517 C = 6541.923521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.040 3.960 3 N -0.372 5.372 4 O 0.096 5.904 5 C 0.005 3.995 6 Cl 0.062 6.938 7 C -0.154 4.154 8 C -0.056 4.056 9 C 0.499 3.501 10 O -0.600 6.600 11 N -0.599 5.599 12 C 0.077 3.923 13 C 0.262 3.738 14 H 0.006 0.994 15 C -0.133 4.133 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.013 3.987 19 N -0.920 5.920 20 Si 0.964 3.036 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.268 1.268 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.135 0.865 28 H 0.143 0.857 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.019 0.981 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.148 4.200 -16.932 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 N -0.081 5.081 4 O 0.033 5.967 5 C -0.085 4.085 6 Cl 0.090 6.910 7 C -0.159 4.159 8 C -0.095 4.095 9 C 0.288 3.712 10 O -0.482 6.482 11 N -0.329 5.329 12 C -0.065 4.065 13 C 0.160 3.840 14 H 0.024 0.976 15 C -0.192 4.192 16 C -0.572 4.572 17 H 0.082 0.918 18 C -0.186 4.186 19 N -0.559 5.559 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.193 1.193 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.153 0.847 28 H 0.161 0.839 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.208 5.735 -16.275 17.551 hybrid contribution -0.392 -1.072 0.984 1.507 sum 2.817 4.663 -15.291 16.232 Atomic orbital electron populations 1.20382 0.83383 1.05839 1.03959 1.23779 1.00414 0.87518 1.00140 1.73863 0.88804 1.23704 1.21767 1.84835 1.22179 1.21028 1.68689 1.24696 0.91649 0.84808 1.07396 1.98445 1.27369 1.68561 1.96599 1.20443 0.90100 0.97769 1.07598 1.20119 1.07148 0.88474 0.93771 1.20991 0.76727 0.81837 0.91645 1.90659 1.53173 1.55739 1.48591 1.48201 1.65758 1.10114 1.08833 1.21920 1.01948 0.94219 0.88438 1.18501 0.94753 0.92430 0.78323 0.97567 1.21882 0.95634 0.98840 1.02828 1.21593 0.96298 1.41802 0.97523 0.91758 1.25744 1.01325 0.95858 0.95713 1.70034 1.35642 1.46880 1.03362 0.85471 0.79695 0.78929 0.77009 1.19320 1.21596 1.19279 0.90716 0.88537 0.87353 0.84677 0.83883 0.91996 0.88186 0.91229 0.91703 0.93120 0.96182 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.39 71.24 0.74 -0.95 16 2 C 0.04 1.14 7.32 43.55 0.32 1.46 16 3 N -0.37 -11.55 12.07 -49.43 -0.60 -12.14 16 4 O 0.10 2.91 11.20 71.37 0.80 3.71 16 5 C 0.00 0.13 8.12 67.23 0.55 0.68 16 6 Cl 0.06 1.46 29.23 -2.72 -0.08 1.38 16 7 C -0.15 -4.33 4.82 -19.71 -0.10 -4.42 16 8 C -0.06 -1.36 4.65 29.10 0.14 -1.23 16 9 C 0.50 18.96 7.67 87.66 0.67 19.63 16 10 O -0.60 -29.47 15.36 -3.04 -0.05 -29.52 16 11 N -0.60 -23.34 2.75 -826.77 -2.28 -25.62 16 12 C 0.08 2.07 9.48 127.77 1.21 3.28 16 13 C 0.26 13.21 2.64 44.25 0.12 13.32 16 14 H 0.01 0.39 6.90 -2.39 -0.02 0.37 16 15 C -0.13 -6.26 8.95 71.98 0.64 -5.61 16 16 C -0.53 -28.05 8.37 25.60 0.21 -27.83 16 17 H 0.06 3.23 7.64 -2.91 -0.02 3.21 16 18 C 0.01 0.69 5.30 84.66 0.45 1.14 16 19 N -0.92 -52.69 11.32 21.45 0.24 -52.45 16 20 Si 0.96 42.16 29.54 68.60 2.03 44.19 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.11 1.76 7.65 -2.39 -0.02 1.74 16 27 H 0.14 2.48 7.40 -2.39 -0.02 2.46 16 28 H 0.14 2.52 7.61 -2.39 -0.02 2.50 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 1.74 6.44 -2.39 -0.02 1.73 16 31 H 0.07 1.96 6.43 -2.39 -0.02 1.95 16 32 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 33 H 0.05 2.12 6.66 -2.39 -0.02 2.10 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 35 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -71.40 314.19 6.14 -65.26 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.12 Total: 5.74 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 4.95 Total: -0.55 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -2.63 Total: -90.21 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: 0.75 Total: -25.81 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 17 Polarization: 1.46 SS G_CDS: -0.08 Total: 1.38 kcal Total: -71.40 6.14 -65.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.039 kcal (2) G-P(sol) polarization free energy of solvation -71.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds