Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86795 * 119.99540 * 2 1 4 4 H 1.48503 * 109.47134 * 239.99337 * 3 2 1 5 5 H 1.48499 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47254 * 119.99845 * 3 2 1 7 7 C 1.39912 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 196.72064 * 7 2 1 9 9 C 1.41135 * 119.99735 * 16.72889 * 7 2 1 10 10 C 1.40878 * 120.16601 * 25.48851 * 9 7 2 11 11 C 1.36364 * 119.83373 * 180.25298 * 10 9 7 12 12 C 1.39507 * 120.15983 * 359.49505 * 11 10 9 13 13 N 1.39134 * 119.83133 * 180.27964 * 12 11 10 14 14 C 1.34774 * 119.99868 * 34.39384 * 13 12 11 15 15 O 1.21554 * 120.00130 * 5.10631 * 14 13 12 16 16 C 1.47801 * 119.99515 * 185.10869 * 14 13 12 17 17 C 1.39583 * 120.55174 * 359.72058 * 16 14 13 18 18 N 1.31649 * 120.61773 * 179.72653 * 17 16 14 19 19 C 1.31951 * 121.91185 * 0.58937 * 18 17 16 20 20 C 1.38545 * 121.04396 * 359.67668 * 19 18 17 21 21 F 1.35105 * 120.36959 * 180.02562 * 20 19 18 22 22 C 1.38603 * 119.25780 * 0.02562 * 20 19 18 23 23 C 1.39510 * 120.33386 * 0.25515 * 12 11 10 24 24 C 1.36358 * 120.16593 * 0.02562 * 23 12 11 25 25 H 0.96990 * 120.00646 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.08297 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.91822 * 179.77340 * 11 10 9 28 28 H 0.96998 * 119.99841 * 214.39622 * 13 12 11 29 29 H 1.07997 * 119.69052 * 0.02562 * 17 16 14 30 30 H 1.07993 * 119.47511 * 179.69930 * 19 18 17 31 31 H 1.08001 * 120.86702 * 180.02562 * 22 20 19 32 32 H 1.07997 * 119.91627 * 180.02562 * 23 12 11 33 33 H 1.07994 * 120.08752 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0964 1.6964 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0541 -1.2312 0.2696 9 6 1.3474 -2.4082 -0.3508 10 6 0.2146 -2.3719 -1.1874 11 6 -0.4218 -3.5316 -1.5184 12 6 0.0526 -4.7528 -1.0391 13 7 -0.5986 -5.9325 -1.3858 14 6 -1.1628 -6.0580 -2.6033 15 8 -1.0237 -5.1789 -3.4311 16 6 -1.9508 -7.2646 -2.9317 17 6 -2.1130 -8.2836 -1.9917 18 7 -2.8190 -9.3564 -2.2810 19 6 -3.3878 -9.5200 -3.4603 20 6 -3.2700 -8.5577 -4.4500 21 9 -3.8585 -8.7391 -5.6526 22 6 -2.5417 -7.4069 -4.1926 23 6 1.1770 -4.7973 -0.2143 24 6 1.8203 -3.6453 0.1297 25 1 -0.4850 0.8399 -0.0004 26 1 -0.1511 -1.4275 -1.5628 27 1 -1.2926 -3.5050 -2.1567 28 1 -0.6464 -6.6646 -0.7512 29 1 -1.6591 -8.1889 -1.0163 30 1 -3.9544 -10.4181 -3.6570 31 1 -2.4335 -6.6397 -4.9451 32 1 1.5387 -5.7464 0.1525 33 1 2.6908 -3.6812 0.7678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124813094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = -19.935695 kcal Electronic energy + Delta-G solvation = -20628.767748 eV Core-core repulsion = 17147.795530 eV Total energy + Delta-G solvation = -3480.972218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.27984 -40.73700 -39.22829 -37.28564 -34.67601 -33.20811 -32.73776 -31.33494 -29.58020 -29.00410 -25.79753 -24.26946 -23.87991 -21.68999 -21.20283 -19.93098 -18.39933 -17.61660 -17.38951 -17.18420 -16.65196 -16.14141 -15.81886 -15.32616 -14.75672 -14.24360 -14.08109 -14.00779 -13.62138 -13.47339 -13.09224 -12.77779 -12.61121 -12.13079 -11.90038 -11.47707 -11.20477 -11.14104 -10.76412 -10.41199 -10.18273 -9.96584 -9.73319 -9.55095 -9.35098 -9.17553 -9.01600 -7.60860 -7.08998 -6.80837 -4.37418 0.24644 0.67855 2.48124 2.88825 3.02251 3.04286 3.06282 3.15876 3.31885 3.64506 3.73158 3.88317 3.97502 4.38407 4.46956 4.56678 4.60322 4.87993 5.23914 5.47467 5.63110 5.65409 6.06895 6.16871 6.29953 6.65385 6.87931 6.95895 7.06576 7.19218 7.35722 7.49950 7.56969 7.83844 7.97820 8.07188 8.21149 8.51724 8.58353 8.80715 8.90995 10.11091 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.038898 B = 0.003135 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.662616 B = 8930.252158 C = 9401.816158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.455 4.455 8 H 0.079 0.921 9 C 0.108 3.892 10 C -0.156 4.156 11 C -0.082 4.082 12 C -0.015 4.015 13 N -0.635 5.635 14 C 0.541 3.459 15 O -0.519 6.519 16 C -0.142 4.142 17 C 0.119 3.881 18 N -0.458 5.458 19 C 0.089 3.911 20 C 0.044 3.956 21 F -0.127 7.127 22 C -0.056 4.056 23 C -0.098 4.098 24 C -0.216 4.216 25 H 0.283 0.717 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.394 0.606 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.161 0.839 32 H 0.092 0.908 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 -13.225 -3.721 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.106 3.894 10 C -0.175 4.175 11 C -0.102 4.102 12 C -0.107 4.107 13 N -0.278 5.278 14 C 0.327 3.673 15 O -0.396 6.396 16 C -0.147 4.147 17 C -0.039 4.039 18 N -0.166 5.166 19 C -0.070 4.070 20 C 0.022 3.978 21 F -0.105 7.105 22 C -0.083 4.083 23 C -0.118 4.118 24 C -0.236 4.236 25 H 0.094 0.906 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.229 0.771 29 H 0.185 0.815 30 H 0.189 0.811 31 H 0.179 0.821 32 H 0.110 0.890 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.629 -13.077 -3.695 14.709 hybrid contribution 0.242 0.980 -0.494 1.124 sum -5.387 -12.097 -4.189 13.889 Atomic orbital electron populations 1.69820 1.07611 1.29561 1.34318 1.25953 0.94780 1.01472 0.92233 0.86327 0.80128 0.80034 0.80036 1.18739 1.20275 1.18945 1.19561 0.97774 0.91170 1.39940 0.90275 1.17681 0.91326 0.92114 0.88312 1.20980 0.99161 0.96721 1.00677 1.20396 0.99098 0.91294 0.99403 1.17099 0.98928 0.84112 1.10589 1.42825 1.54012 1.16933 1.14025 1.17849 0.80938 0.85889 0.82639 1.90809 1.59989 1.41306 1.47494 1.21111 1.01145 0.97379 0.95096 1.23120 0.93693 0.87962 0.99170 1.67745 1.07636 1.22516 1.18678 1.23094 0.97452 0.98469 0.87970 1.18671 0.98891 0.96959 0.83271 1.91550 1.81709 1.95288 1.41987 1.21823 0.92737 0.96392 0.97333 1.20030 0.94320 0.97276 1.00196 1.20551 1.03570 0.92581 1.06867 0.90631 0.86146 0.88115 0.77122 0.81463 0.81146 0.82112 0.89007 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.02 10.95 55.55 0.61 -19.41 16 2 C 0.07 1.82 5.15 -17.33 -0.09 1.73 16 3 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.77 9.04 -37.86 -0.34 -12.12 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 9 C 0.11 2.83 5.57 -106.80 -0.59 2.23 16 10 C -0.16 -4.06 8.63 -39.26 -0.34 -4.40 16 11 C -0.08 -1.98 8.57 -39.78 -0.34 -2.32 16 12 C -0.02 -0.33 6.27 -83.60 -0.52 -0.85 16 13 N -0.64 -10.59 5.25 -10.61 -0.06 -10.64 16 14 C 0.54 9.18 7.50 -12.35 -0.09 9.08 16 15 O -0.52 -10.91 14.13 5.32 0.08 -10.83 16 16 C -0.14 -1.84 5.89 -104.83 -0.62 -2.46 16 17 C 0.12 1.28 10.71 -17.13 -0.18 1.10 16 18 N -0.46 -4.93 10.34 -12.85 -0.13 -5.07 16 19 C 0.09 0.83 11.16 -17.39 -0.19 0.64 16 20 C 0.04 0.46 7.33 -39.33 -0.29 0.17 16 21 F -0.13 -1.33 17.28 2.25 0.04 -1.29 16 22 C -0.06 -0.68 9.70 -38.79 -0.38 -1.05 16 23 C -0.10 -2.06 9.90 -39.79 -0.39 -2.46 16 24 C -0.22 -5.05 9.74 -39.26 -0.38 -5.44 16 25 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 26 H 0.12 3.27 6.18 -52.48 -0.32 2.94 16 27 H 0.10 2.43 6.46 -52.49 -0.34 2.09 16 28 H 0.39 4.92 6.89 -40.82 -0.28 4.63 16 29 H 0.17 1.38 6.43 -52.49 -0.34 1.04 16 30 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.16 1.97 7.74 -52.49 -0.41 1.57 16 32 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 298.09 15.07 4.49 4.49 Total: -1.00 -29.55 298.09 -7.27 -36.82 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -2.51 Total: 8.80 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -4.76 Total: -16.13 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.42 Total: -35.12 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.55 -7.27 -36.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124813094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.883 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds