Wall clock time and date at job start Tue Mar 31 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86795 * 119.99540 * 2 1 4 4 H 1.48503 * 109.47134 * 239.99337 * 3 2 1 5 5 H 1.48499 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47254 * 119.99845 * 3 2 1 7 7 C 1.39912 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 196.72064 * 7 2 1 9 9 C 1.41135 * 119.99735 * 16.72889 * 7 2 1 10 10 C 1.40878 * 120.16601 * 25.48851 * 9 7 2 11 11 C 1.36364 * 119.83373 * 180.25298 * 10 9 7 12 12 C 1.39507 * 120.15983 * 359.49505 * 11 10 9 13 13 N 1.39134 * 119.83133 * 180.27964 * 12 11 10 14 14 C 1.34774 * 119.99868 * 34.39384 * 13 12 11 15 15 O 1.21554 * 120.00130 * 5.10631 * 14 13 12 16 16 C 1.47801 * 119.99515 * 185.10869 * 14 13 12 17 17 C 1.39583 * 120.55174 * 359.72058 * 16 14 13 18 18 N 1.31649 * 120.61773 * 179.72653 * 17 16 14 19 19 C 1.31951 * 121.91185 * 0.58937 * 18 17 16 20 20 C 1.38545 * 121.04396 * 359.67668 * 19 18 17 21 21 F 1.35105 * 120.36959 * 180.02562 * 20 19 18 22 22 C 1.38603 * 119.25780 * 0.02562 * 20 19 18 23 23 C 1.39510 * 120.33386 * 0.25515 * 12 11 10 24 24 C 1.36358 * 120.16593 * 0.02562 * 23 12 11 25 25 H 0.96990 * 120.00646 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.08297 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.91822 * 179.77340 * 11 10 9 28 28 H 0.96998 * 119.99841 * 214.39622 * 13 12 11 29 29 H 1.07997 * 119.69052 * 0.02562 * 17 16 14 30 30 H 1.07993 * 119.47511 * 179.69930 * 19 18 17 31 31 H 1.08001 * 120.86702 * 180.02562 * 22 20 19 32 32 H 1.07997 * 119.91627 * 180.02562 * 23 12 11 33 33 H 1.07994 * 120.08752 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0964 1.6964 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0541 -1.2312 0.2696 9 6 1.3474 -2.4082 -0.3508 10 6 0.2146 -2.3719 -1.1874 11 6 -0.4218 -3.5316 -1.5184 12 6 0.0526 -4.7528 -1.0391 13 7 -0.5986 -5.9325 -1.3858 14 6 -1.1628 -6.0580 -2.6033 15 8 -1.0237 -5.1789 -3.4311 16 6 -1.9508 -7.2646 -2.9317 17 6 -2.1130 -8.2836 -1.9917 18 7 -2.8190 -9.3564 -2.2810 19 6 -3.3878 -9.5200 -3.4603 20 6 -3.2700 -8.5577 -4.4500 21 9 -3.8585 -8.7391 -5.6526 22 6 -2.5417 -7.4069 -4.1926 23 6 1.1770 -4.7973 -0.2143 24 6 1.8203 -3.6453 0.1297 25 1 -0.4850 0.8399 -0.0004 26 1 -0.1511 -1.4275 -1.5628 27 1 -1.2926 -3.5050 -2.1567 28 1 -0.6464 -6.6646 -0.7512 29 1 -1.6591 -8.1889 -1.0163 30 1 -3.9544 -10.4181 -3.6570 31 1 -2.4335 -6.6397 -4.9451 32 1 1.5387 -5.7464 0.1525 33 1 2.6908 -3.6812 0.7678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124813094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:01 Heat of formation + Delta-G solvation = -37.770466 kcal Electronic energy + Delta-G solvation = -20629.541121 eV Core-core repulsion = 17147.795530 eV Total energy + Delta-G solvation = -3481.745591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.11222 -41.86718 -40.51774 -38.98770 -36.32669 -34.88102 -33.73733 -32.35909 -31.42060 -30.69632 -27.29810 -25.61477 -24.77264 -23.34465 -22.87224 -21.43664 -19.60709 -19.23800 -18.64524 -18.03654 -17.93550 -17.10196 -17.05756 -16.97005 -16.18781 -15.76018 -15.52940 -15.00274 -14.98095 -14.51244 -14.39053 -14.36081 -13.95004 -13.66889 -13.49816 -13.26044 -12.94226 -12.77574 -12.42479 -11.83605 -11.58749 -11.39008 -11.15595 -11.08351 -10.82258 -10.61552 -10.20192 -9.46883 -8.89008 -8.61673 -6.28784 -0.68289 -0.20846 0.82269 1.14457 1.38437 1.46482 1.51089 1.77190 2.04789 2.20468 2.53942 2.75872 2.84288 3.13791 3.51333 3.56103 3.63860 3.73495 3.94739 4.34535 4.43139 4.47058 4.63159 4.74800 4.94460 5.08745 5.15264 5.27499 5.33460 5.39430 5.66175 5.83554 6.03620 6.09012 6.31791 6.50692 6.59146 6.66774 6.91373 6.97757 7.23741 8.31803 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.038898 B = 0.003135 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.662616 B = 8930.252158 C = 9401.816158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.493 4.493 8 H 0.082 0.918 9 C 0.076 3.924 10 C -0.181 4.181 11 C -0.097 4.097 12 C 0.000 4.000 13 N -0.627 5.627 14 C 0.546 3.454 15 O -0.567 6.567 16 C -0.158 4.158 17 C 0.136 3.864 18 N -0.466 5.466 19 C 0.110 3.890 20 C 0.042 3.958 21 F -0.126 7.126 22 C -0.062 4.062 23 C -0.092 4.092 24 C -0.224 4.224 25 H 0.288 0.712 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.418 0.582 29 H 0.195 0.805 30 H 0.208 0.792 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 -15.881 -3.050 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.522 4.522 8 H 0.100 0.900 9 C 0.073 3.927 10 C -0.201 4.201 11 C -0.117 4.117 12 C -0.093 4.093 13 N -0.272 5.272 14 C 0.334 3.666 15 O -0.447 6.447 16 C -0.164 4.164 17 C -0.022 4.022 18 N -0.173 5.173 19 C -0.048 4.048 20 C 0.021 3.979 21 F -0.105 7.105 22 C -0.089 4.089 23 C -0.112 4.112 24 C -0.244 4.244 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.258 0.742 29 H 0.212 0.788 30 H 0.224 0.776 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.718 -15.789 -3.001 17.059 hybrid contribution 0.138 1.541 -0.795 1.739 sum -5.581 -14.248 -3.796 15.766 Atomic orbital electron populations 1.69892 1.09106 1.30644 1.35374 1.26815 0.95491 1.04727 0.91280 0.85236 0.78743 0.75530 0.80137 1.18721 1.19431 1.17877 1.19830 0.98153 0.92280 1.41943 0.90001 1.18012 0.91852 0.93667 0.89123 1.20868 1.00503 0.96523 1.02224 1.20442 0.99080 0.92297 0.99879 1.17157 0.98571 0.84760 1.08798 1.42658 1.53588 1.16170 1.14791 1.18403 0.79958 0.86371 0.81875 1.90794 1.61495 1.43403 1.48959 1.20697 1.02698 0.96684 0.96307 1.23460 0.92530 0.86828 0.99405 1.67913 1.08065 1.22209 1.19139 1.23684 0.95626 0.98719 0.86776 1.18643 0.98898 0.96665 0.83698 1.91557 1.81652 1.95219 1.42060 1.21851 0.93054 0.96987 0.97046 1.20411 0.93257 0.98497 0.99028 1.20838 1.04176 0.92514 1.06840 0.90167 0.88561 0.89051 0.74245 0.78837 0.77552 0.83210 0.84332 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.79 10.95 21.82 0.24 -43.55 16 2 C 0.03 1.62 5.15 85.24 0.44 2.05 16 3 Si 0.98 38.31 29.59 68.60 2.03 40.34 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.49 -26.40 9.04 23.39 0.21 -26.19 16 8 H 0.08 4.15 7.90 -2.91 -0.02 4.12 16 9 C 0.08 4.10 5.57 -21.27 -0.12 3.98 16 10 C -0.18 -9.96 8.63 22.48 0.19 -9.77 16 11 C -0.10 -4.85 8.57 22.14 0.19 -4.66 16 12 C 0.00 0.02 6.27 38.60 0.24 0.26 16 13 N -0.63 -19.72 5.25 -305.75 -1.61 -21.32 16 14 C 0.55 18.13 7.50 86.77 0.65 18.78 16 15 O -0.57 -24.40 14.13 -3.89 -0.05 -24.46 16 16 C -0.16 -3.84 5.89 -20.00 -0.12 -3.96 16 17 C 0.14 2.47 10.71 85.04 0.91 3.38 16 18 N -0.47 -8.19 10.34 -194.57 -2.01 -10.20 16 19 C 0.11 1.65 11.16 84.75 0.95 2.60 16 20 C 0.04 0.79 7.33 22.43 0.16 0.96 16 21 F -0.13 -2.39 17.28 44.97 0.78 -1.62 16 22 C -0.06 -1.45 9.70 22.78 0.22 -1.23 16 23 C -0.09 -3.69 9.90 22.14 0.22 -3.47 16 24 C -0.22 -10.41 9.74 22.48 0.22 -10.19 16 25 H 0.29 13.90 8.30 -92.72 -0.77 13.13 16 26 H 0.10 5.63 6.18 -2.91 -0.02 5.62 16 27 H 0.09 4.65 6.46 -2.91 -0.02 4.63 16 28 H 0.42 8.96 6.89 -92.71 -0.64 8.33 16 29 H 0.19 2.33 6.43 -2.91 -0.02 2.31 16 30 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.15 3.77 7.74 -2.91 -0.02 3.74 16 32 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -67.64 298.09 4.29 -63.35 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.54 Total: 24.92 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 4.37 Total: -27.46 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -3.38 Total: -75.08 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.62 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -67.64 4.29 -63.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124813094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.580 kcal (2) G-P(sol) polarization free energy of solvation -67.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds