Wall clock time and date at job start Tue Mar 31 2020 06:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36051 * 116.99584 * 2 1 4 4 C 1.38674 * 119.98690 * 359.97438 * 3 2 1 5 5 C 1.38273 * 120.01969 * 179.72436 * 4 3 2 6 6 F 1.35100 * 120.00830 * 180.30065 * 5 4 3 7 7 C 1.39046 * 119.98537 * 0.55039 * 5 4 3 8 8 N 1.40097 * 120.01886 * 179.75050 * 7 5 4 9 9 C 1.46496 * 119.99829 * 179.72388 * 8 7 5 10 10 C 1.50706 * 109.47106 * 179.97438 * 9 8 7 11 11 O 1.21295 * 119.99584 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99737 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00254 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99943 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00135 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 119.99954 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47152 * 89.99894 * 17 15 13 19 19 H 1.48501 * 109.47252 * 209.99373 * 17 15 13 20 20 H 1.48500 * 109.47362 * 329.99455 * 17 15 13 21 21 C 1.38765 * 119.95991 * 359.47357 * 7 5 4 22 22 C 1.38341 * 119.98377 * 0.25042 * 21 7 5 23 23 F 1.35098 * 119.99294 * 180.02562 * 22 21 7 24 24 H 1.08997 * 109.47384 * 299.99785 * 1 2 3 25 25 H 1.09010 * 109.47119 * 60.00324 * 1 2 3 26 26 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.98407 * 359.97438 * 4 3 2 28 28 H 0.96998 * 119.99979 * 359.71853 * 8 7 5 29 29 H 1.09001 * 109.47001 * 59.99858 * 9 8 7 30 30 H 1.09000 * 109.47574 * 300.00074 * 9 8 7 31 31 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 32 32 H 0.96994 * 120.00084 * 179.97438 * 16 15 13 33 33 H 1.08003 * 120.00722 * 180.23383 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 1.2909 2.3751 -0.0005 5 6 1.9179 3.6075 0.0052 6 9 1.1815 4.7401 0.0108 7 6 3.3064 3.6808 0.0000 8 7 3.9423 4.9292 0.0005 9 6 5.4053 5.0059 0.0011 10 6 5.8325 6.4512 0.0010 11 8 4.9970 7.3305 0.0009 12 7 7.1428 6.7665 0.0020 13 6 7.5314 8.0813 0.0024 14 1 6.7875 8.8643 0.0024 15 6 8.8823 8.4064 0.0040 16 7 9.2548 9.6667 0.0039 17 14 10.1689 7.0523 0.0048 18 1 10.5113 6.6939 -1.3951 19 1 11.3882 7.5283 0.7062 20 1 9.6302 5.8580 0.7039 21 6 4.0619 2.5169 0.0000 22 6 3.4331 1.2846 0.0000 23 9 4.1684 0.1512 0.0006 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2125 2.3179 -0.0014 28 1 3.4140 5.7426 0.0004 29 1 5.7953 4.5120 -0.8888 30 1 5.7947 4.5116 0.8911 31 1 7.8108 6.0633 0.0024 32 1 10.1978 9.8937 0.0054 33 1 5.1404 2.5729 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125135124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:27 Heat of formation + Delta-G solvation = -126.520475 kcal Electronic energy + Delta-G solvation = -21666.468106 eV Core-core repulsion = 17750.104801 eV Total energy + Delta-G solvation = -3916.363305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.90953 -48.88004 -40.10081 -38.90537 -37.79709 -34.86825 -34.01248 -31.86473 -30.51588 -29.70808 -28.04390 -26.35104 -24.37602 -22.95409 -21.95635 -19.70115 -18.93528 -18.60628 -17.88372 -17.50488 -16.66459 -16.44559 -15.70289 -15.54270 -15.26625 -15.19837 -14.98271 -14.90662 -14.79303 -14.43997 -14.42773 -13.57980 -13.16148 -12.92301 -12.57416 -12.41549 -12.22212 -12.19078 -11.87452 -11.65007 -11.44054 -11.24150 -10.69997 -10.10973 -9.76838 -9.69357 -8.96315 -8.84058 -8.36173 -7.28382 -6.45199 -3.98306 0.78272 1.16377 2.93291 2.93740 2.98560 3.07728 3.24752 3.28284 3.48913 3.98414 4.03756 4.07621 4.38765 4.45129 4.72038 4.87558 4.88541 5.07908 5.16858 5.19739 5.35389 5.46661 5.61526 5.62044 5.64630 5.71025 5.93822 6.29853 6.95276 7.13680 7.40844 7.72749 7.97069 8.39647 8.77016 9.24073 9.57302 10.66980 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.003474 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.142756 B = 8057.227666 C = 9000.917713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.052 3.948 4 C -0.164 4.164 5 C 0.047 3.953 6 F -0.133 7.133 7 C 0.200 3.800 8 N -0.715 5.715 9 C 0.107 3.893 10 C 0.437 3.563 11 O -0.575 6.575 12 N -0.576 5.576 13 C -0.311 4.311 14 H 0.122 0.878 15 C 0.045 3.955 16 N -0.873 5.873 17 Si 0.880 3.120 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.267 1.267 21 C -0.183 4.183 22 C 0.117 3.883 23 F -0.128 7.128 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.148 0.852 28 H 0.419 0.581 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.374 0.626 32 H 0.276 0.724 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.568 -19.480 -0.024 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.005 3.995 4 C -0.185 4.185 5 C 0.023 3.977 6 F -0.111 7.111 7 C 0.092 3.908 8 N -0.347 5.347 9 C -0.021 4.021 10 C 0.223 3.777 11 O -0.458 6.458 12 N -0.213 5.213 13 C -0.440 4.440 14 H 0.139 0.861 15 C -0.159 4.159 16 N -0.512 5.512 17 Si 0.706 3.294 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.193 1.193 21 C -0.208 4.208 22 C 0.096 3.904 23 F -0.107 7.107 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.166 0.834 28 H 0.259 0.741 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.207 0.793 32 H 0.087 0.913 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.629 -18.853 -0.024 22.692 hybrid contribution 0.766 -0.438 0.018 0.883 sum -11.863 -19.291 -0.006 22.647 Atomic orbital electron populations 1.23076 0.78314 1.04040 1.01420 1.86139 1.21325 1.25176 1.89737 1.18294 0.90303 0.85043 1.05882 1.20751 1.00855 0.89805 1.07041 1.16742 0.86941 0.82397 1.11651 1.91494 1.76477 1.48683 1.94479 1.17437 0.89453 0.87016 0.96874 1.44451 1.05662 1.04854 1.79734 1.21063 0.81259 0.97348 1.02422 1.19536 0.83494 0.89335 0.85331 1.90567 1.50864 1.49077 1.55321 1.42111 1.05297 1.08451 1.65473 1.19442 0.93688 0.82068 1.48771 0.86089 1.25076 0.97175 0.96556 0.97108 1.69616 1.17431 1.16179 1.47945 0.86657 0.82100 0.81499 0.79108 1.19372 1.19942 1.19290 1.20277 1.01035 0.88425 1.11034 1.16544 0.85631 0.82371 1.05848 1.91502 1.76613 1.48628 1.93951 0.92568 0.92575 0.88128 0.83428 0.74078 0.90067 0.90069 0.79301 0.91320 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.39 10.36 -19.90 -0.21 -3.59 16 3 C 0.05 0.61 6.69 -39.20 -0.26 0.35 16 4 C -0.16 -1.79 9.01 -39.41 -0.35 -2.14 16 5 C 0.05 0.61 7.31 -39.27 -0.29 0.32 16 6 F -0.13 -1.86 16.64 2.25 0.04 -1.83 16 7 C 0.20 2.71 6.66 -83.58 -0.56 2.15 16 8 N -0.72 -11.06 5.72 -59.69 -0.34 -11.40 16 9 C 0.11 1.65 5.40 -5.19 -0.03 1.62 16 10 C 0.44 9.32 7.85 -10.98 -0.09 9.24 16 11 O -0.57 -14.61 15.24 5.54 0.08 -14.53 16 12 N -0.58 -12.93 5.09 -10.96 -0.06 -12.98 16 13 C -0.31 -8.45 10.16 -14.93 -0.15 -8.61 16 14 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 15 C 0.05 1.19 5.50 -17.47 -0.10 1.10 16 16 N -0.87 -24.68 13.96 55.50 0.77 -23.91 16 17 Si 0.88 18.47 27.74 -169.99 -4.71 13.75 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.04 6.52 56.52 0.37 -4.67 16 21 C -0.18 -2.24 9.29 -39.35 -0.37 -2.60 16 22 C 0.12 1.46 7.30 -39.32 -0.29 1.17 16 23 F -0.13 -1.68 17.10 2.25 0.04 -1.64 16 24 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 25 H 0.06 0.31 7.66 -51.92 -0.40 -0.09 16 26 H 0.10 0.45 8.14 -51.92 -0.42 0.02 16 27 H 0.15 1.22 6.29 -52.49 -0.33 0.89 16 28 H 0.42 7.24 6.92 -40.82 -0.28 6.96 16 29 H 0.08 1.06 7.95 -51.93 -0.41 0.64 16 30 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 31 H 0.37 7.23 5.76 -40.82 -0.24 6.99 16 32 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.15 1.61 6.73 -52.48 -0.35 1.26 16 LS Contribution 298.33 15.07 4.50 4.50 Total: -1.00 -31.42 298.33 -4.17 -35.59 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -2.80 Total: 12.28 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.48 Total: 3.76 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.38 Total: -48.29 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.12 Total: -18.12 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.08 Total: -3.47 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.71 Total: 13.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.42 -4.17 -35.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125135124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.926 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds