Wall clock time and date at job start Tue Mar 31 2020 06:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36051 * 116.99584 * 2 1 4 4 C 1.38674 * 119.98690 * 359.97438 * 3 2 1 5 5 C 1.38273 * 120.01969 * 179.72436 * 4 3 2 6 6 F 1.35100 * 120.00830 * 180.30065 * 5 4 3 7 7 C 1.39046 * 119.98537 * 0.55039 * 5 4 3 8 8 N 1.40097 * 120.01886 * 179.75050 * 7 5 4 9 9 C 1.46496 * 119.99829 * 179.72388 * 8 7 5 10 10 C 1.50706 * 109.47106 * 179.97438 * 9 8 7 11 11 O 1.21295 * 119.99584 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99737 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00254 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99943 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00135 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 119.99954 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47152 * 89.99894 * 17 15 13 19 19 H 1.48501 * 109.47252 * 209.99373 * 17 15 13 20 20 H 1.48500 * 109.47362 * 329.99455 * 17 15 13 21 21 C 1.38765 * 119.95991 * 359.47357 * 7 5 4 22 22 C 1.38341 * 119.98377 * 0.25042 * 21 7 5 23 23 F 1.35098 * 119.99294 * 180.02562 * 22 21 7 24 24 H 1.08997 * 109.47384 * 299.99785 * 1 2 3 25 25 H 1.09010 * 109.47119 * 60.00324 * 1 2 3 26 26 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.98407 * 359.97438 * 4 3 2 28 28 H 0.96998 * 119.99979 * 359.71853 * 8 7 5 29 29 H 1.09001 * 109.47001 * 59.99858 * 9 8 7 30 30 H 1.09000 * 109.47574 * 300.00074 * 9 8 7 31 31 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 32 32 H 0.96994 * 120.00084 * 179.97438 * 16 15 13 33 33 H 1.08003 * 120.00722 * 180.23383 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 1.2909 2.3751 -0.0005 5 6 1.9179 3.6075 0.0052 6 9 1.1815 4.7401 0.0108 7 6 3.3064 3.6808 0.0000 8 7 3.9423 4.9292 0.0005 9 6 5.4053 5.0059 0.0011 10 6 5.8325 6.4512 0.0010 11 8 4.9970 7.3305 0.0009 12 7 7.1428 6.7665 0.0020 13 6 7.5314 8.0813 0.0024 14 1 6.7875 8.8643 0.0024 15 6 8.8823 8.4064 0.0040 16 7 9.2548 9.6667 0.0039 17 14 10.1689 7.0523 0.0048 18 1 10.5113 6.6939 -1.3951 19 1 11.3882 7.5283 0.7062 20 1 9.6302 5.8580 0.7039 21 6 4.0619 2.5169 0.0000 22 6 3.4331 1.2846 0.0000 23 9 4.1684 0.1512 0.0006 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2125 2.3179 -0.0014 28 1 3.4140 5.7426 0.0004 29 1 5.7953 4.5120 -0.8888 30 1 5.7947 4.5116 0.8911 31 1 7.8108 6.0633 0.0024 32 1 10.1978 9.8937 0.0054 33 1 5.1404 2.5729 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125135124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:27 Heat of formation + Delta-G solvation = -150.124458 kcal Electronic energy + Delta-G solvation = -21667.491651 eV Core-core repulsion = 17750.104801 eV Total energy + Delta-G solvation = -3917.386851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.91344 -49.86217 -41.02031 -40.45621 -38.86345 -36.32423 -35.57205 -33.84271 -31.42493 -30.79524 -28.94533 -27.52988 -25.93521 -23.95120 -22.94234 -21.43357 -20.52674 -19.66279 -19.05477 -18.48189 -17.81728 -17.32253 -17.17980 -16.74998 -16.55770 -16.29060 -16.15694 -16.00357 -15.93820 -15.54410 -15.30698 -14.97815 -14.57431 -14.36386 -14.27790 -13.78660 -13.32531 -13.12365 -12.94373 -12.66377 -12.44582 -12.40475 -12.22817 -11.99327 -11.57628 -10.65799 -10.63807 -10.32599 -9.89712 -8.45453 -8.29418 -6.08414 -0.14159 0.23325 1.31321 1.35470 1.45642 1.80924 2.03069 2.21667 2.26579 2.35785 2.86726 3.10803 3.11738 3.17660 3.53428 3.84891 3.97832 4.31591 4.34863 4.38322 4.44372 4.44527 4.51156 4.69474 4.77734 4.83481 5.00093 5.37619 5.48321 5.84861 6.00728 6.28929 6.48939 6.52495 6.79055 7.29047 7.80860 8.71435 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.003474 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.142756 B = 8057.227666 C = 9000.917713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.058 3.942 4 C -0.155 4.155 5 C 0.035 3.965 6 F -0.144 7.144 7 C 0.185 3.815 8 N -0.731 5.731 9 C 0.120 3.880 10 C 0.440 3.560 11 O -0.622 6.622 12 N -0.576 5.576 13 C -0.334 4.334 14 H 0.057 0.943 15 C -0.011 4.011 16 N -0.929 5.929 17 Si 0.964 3.036 18 H -0.256 1.256 19 H -0.276 1.276 20 H -0.225 1.225 21 C -0.173 4.173 22 C 0.103 3.897 23 F -0.133 7.133 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.174 0.826 28 H 0.407 0.593 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.394 0.606 32 H 0.281 0.719 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 -23.417 0.022 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.011 3.989 4 C -0.175 4.175 5 C 0.010 3.990 6 F -0.122 7.122 7 C 0.080 3.920 8 N -0.363 5.363 9 C -0.007 4.007 10 C 0.228 3.772 11 O -0.508 6.508 12 N -0.217 5.217 13 C -0.463 4.463 14 H 0.075 0.925 15 C -0.211 4.211 16 N -0.569 5.569 17 Si 0.783 3.217 18 H -0.180 1.180 19 H -0.201 1.201 20 H -0.148 1.148 21 C -0.197 4.197 22 C 0.083 3.917 23 F -0.112 7.112 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.140 0.860 27 H 0.191 0.809 28 H 0.245 0.755 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.231 0.769 32 H 0.091 0.909 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.370 -22.853 0.023 25.986 hybrid contribution 0.444 0.760 -0.001 0.880 sum -11.926 -22.093 0.022 25.106 Atomic orbital electron populations 1.23424 0.76019 1.05929 1.02538 1.86138 1.23741 1.24744 1.89427 1.18423 0.90322 0.85628 1.04569 1.20924 1.02118 0.88629 1.05842 1.17022 0.87019 0.82734 1.12188 1.91468 1.76703 1.49430 1.94646 1.17523 0.89730 0.86561 0.98230 1.44417 1.05456 1.05101 1.81315 1.21085 0.81596 0.92458 1.05564 1.20718 0.82540 0.91760 0.82162 1.90553 1.52215 1.51623 1.56415 1.41888 1.06383 1.07039 1.66351 1.19003 0.93179 0.83162 1.50945 0.92491 1.26159 0.99532 0.99820 0.95592 1.69796 1.18398 1.19398 1.49310 0.85382 0.77579 0.78602 0.80120 1.17999 1.20124 1.14839 1.20399 1.01881 0.87663 1.09720 1.16712 0.86105 0.82353 1.06556 1.91490 1.76761 1.48844 1.94064 0.91413 0.91415 0.86048 0.80896 0.75530 0.86664 0.86744 0.76934 0.90939 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.26 10.36 -94.13 -0.98 -7.23 16 3 C 0.06 1.22 6.69 22.52 0.15 1.37 16 4 C -0.16 -3.01 9.01 22.38 0.20 -2.81 16 5 C 0.03 0.85 7.31 22.47 0.16 1.01 16 6 F -0.14 -3.97 16.64 44.97 0.75 -3.22 16 7 C 0.19 4.66 6.66 38.14 0.25 4.92 16 8 N -0.73 -21.63 5.72 -342.77 -1.96 -23.59 16 9 C 0.12 3.36 5.40 85.64 0.46 3.82 16 10 C 0.44 18.63 7.85 87.66 0.69 19.32 16 11 O -0.62 -32.84 15.24 -3.08 -0.05 -32.89 16 12 N -0.58 -25.51 5.09 -306.98 -1.56 -27.07 16 13 C -0.33 -18.84 10.16 84.04 0.85 -17.98 16 14 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 15 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 16 N -0.93 -54.60 13.96 21.66 0.30 -54.30 16 17 Si 0.96 36.79 27.74 68.60 1.90 38.69 16 18 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 19 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16 20 H -0.23 -7.01 6.52 99.48 0.65 -6.36 16 21 C -0.17 -3.71 9.29 22.42 0.21 -3.50 16 22 C 0.10 2.31 7.30 22.44 0.16 2.48 16 23 F -0.13 -3.16 17.10 44.97 0.77 -2.39 16 24 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 25 H 0.07 0.53 7.66 -2.38 -0.02 0.51 16 26 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.17 2.34 6.29 -2.91 -0.02 2.33 16 28 H 0.41 14.17 6.92 -92.71 -0.64 13.53 16 29 H 0.12 2.50 7.95 -2.39 -0.02 2.48 16 30 H 0.11 2.50 7.95 -2.39 -0.02 2.48 16 31 H 0.39 14.01 5.76 -92.71 -0.53 13.47 16 32 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.17 2.90 6.73 -2.91 -0.02 2.88 16 Total: -1.00 -73.95 298.33 3.87 -70.09 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -0.04 Total: 32.18 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 4.73 Total: 9.74 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.22 Total: -104.96 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.02 Total: -40.13 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.52 Total: -5.61 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 1.90 Total: 38.69 kcal Total: -73.95 3.87 -70.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125135124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.038 kcal (2) G-P(sol) polarization free energy of solvation -73.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds