Wall clock time and date at job start Tue Mar 31 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48497 * 109.47218 * 239.99894 * 3 2 1 5 5 H 1.48498 * 109.47336 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47182 * 119.99791 * 3 2 1 7 7 C 1.39916 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99985 * 196.83935 * 7 2 1 9 9 C 1.41128 * 119.99964 * 16.83391 * 7 2 1 10 10 C 1.40886 * 120.16103 * 205.61997 * 9 7 2 11 11 C 1.36354 * 119.82831 * 180.23361 * 10 9 7 12 12 C 1.39514 * 120.16902 * 359.52220 * 11 10 9 13 13 N 1.39104 * 119.84017 * 180.27261 * 12 11 10 14 14 C 1.34783 * 119.99708 * 34.48118 * 13 12 11 15 15 O 1.21538 * 119.99850 * 5.10611 * 14 13 12 16 16 C 1.47989 * 119.99817 * 185.09734 * 14 13 12 17 17 C 1.39417 * 119.69173 * 179.73116 * 16 14 13 18 18 C 1.38454 * 119.08989 * 179.73288 * 17 16 14 19 19 C 1.38905 * 118.47041 * 0.53070 * 18 17 16 20 20 F 1.35104 * 120.34690 * 179.74879 * 19 18 17 21 21 C 1.38870 * 119.30733 * 359.73092 * 19 18 17 22 22 N 1.31467 * 120.85999 * 0.02562 * 21 19 18 23 23 C 1.39519 * 120.32566 * 0.25632 * 12 11 10 24 24 C 1.36355 * 120.16666 * 359.97438 * 23 12 11 25 25 H 0.97005 * 119.99793 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.08345 * 0.03013 * 10 9 7 27 27 H 1.08003 * 119.91453 * 179.79646 * 11 10 9 28 28 H 0.96995 * 120.00666 * 214.48368 * 13 12 11 29 29 H 1.08004 * 120.45377 * 359.97438 * 17 16 14 30 30 H 1.08005 * 120.76188 * 180.23958 * 18 17 16 31 31 H 1.08003 * 119.57489 * 179.97438 * 21 19 18 32 32 H 1.07996 * 119.91720 * 179.97438 * 23 12 11 33 33 H 1.08002 * 120.08715 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2776 2.7465 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 3.0536 -1.2318 0.2704 9 6 1.3480 -2.4076 -0.3550 10 6 1.8156 -3.6449 0.1301 11 6 1.1754 -4.7966 -0.2206 12 6 0.0541 -4.7509 -1.0494 13 7 -0.5972 -5.9296 -1.3982 14 6 -0.6693 -6.9461 -0.5161 15 8 -0.2478 -6.8006 0.6145 16 6 -1.2618 -8.2393 -0.9243 17 6 -1.3280 -9.2883 -0.0083 18 6 -1.8899 -10.4910 -0.4018 19 6 -2.3578 -10.6086 -1.7044 20 9 -2.9084 -11.7666 -2.1299 21 6 -2.2541 -9.5233 -2.5645 22 7 -1.7199 -8.3918 -2.1611 23 6 -0.4175 -3.5290 -1.5299 24 6 0.2151 -2.3694 -1.1916 25 1 -0.4850 0.8401 -0.0004 26 1 2.6809 -3.6813 0.7753 27 1 1.5346 -5.7461 0.1478 28 1 -0.9994 -6.0200 -2.2762 29 1 -0.9498 -9.1632 0.9955 30 1 -1.9585 -11.3202 0.2869 31 1 -2.6161 -9.6101 -3.5783 32 1 -1.2859 -3.5014 -2.1714 33 1 -0.1513 -1.4242 -1.5639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125249692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:52 Heat of formation + Delta-G solvation = -20.668265 kcal Electronic energy + Delta-G solvation = -20537.505708 eV Core-core repulsion = 17056.501724 eV Total energy + Delta-G solvation = -3481.003984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.36530 -40.68836 -39.09200 -37.19415 -34.57304 -33.21975 -32.64838 -31.33324 -29.59482 -28.88557 -25.59392 -24.38425 -23.87270 -21.77495 -20.93978 -19.96645 -18.24338 -17.73185 -17.57536 -17.31363 -16.19548 -16.12152 -15.33855 -15.20748 -14.86895 -14.36091 -14.09140 -13.98432 -13.58387 -13.46411 -12.90930 -12.86748 -12.59484 -12.12310 -11.85894 -11.36731 -11.11740 -11.07690 -10.77733 -10.32973 -10.28396 -10.00693 -9.61273 -9.51285 -9.28313 -9.18317 -8.93996 -7.56970 -7.01036 -6.76961 -4.32716 0.25605 0.74867 2.45963 2.87803 3.05054 3.07619 3.09130 3.19351 3.43600 3.63741 3.75910 3.90840 4.00539 4.35145 4.45316 4.60925 4.72463 5.10208 5.34914 5.52259 5.59046 5.68266 6.18287 6.20805 6.38580 6.74673 6.89584 7.01231 7.14722 7.24240 7.32953 7.56842 7.70652 7.83602 8.00218 8.24424 8.26124 8.55270 8.67775 8.84957 8.96348 10.14479 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.056447 B = 0.002904 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.918253 B = 9638.490343 C = 9904.179356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.108 3.892 10 C -0.216 4.216 11 C -0.073 4.073 12 C -0.014 4.014 13 N -0.622 5.622 14 C 0.549 3.451 15 O -0.524 6.524 16 C 0.082 3.918 17 C -0.086 4.086 18 C -0.115 4.115 19 C 0.060 3.940 20 F -0.128 7.128 21 C 0.076 3.924 22 N -0.433 5.433 23 C -0.108 4.108 24 C -0.154 4.154 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.405 0.595 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.174 0.826 32 H 0.092 0.908 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 -15.081 -4.334 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.105 3.895 10 C -0.236 4.236 11 C -0.093 4.093 12 C -0.107 4.107 13 N -0.263 5.263 14 C 0.333 3.667 15 O -0.400 6.400 16 C -0.056 4.056 17 C -0.106 4.106 18 C -0.141 4.141 19 C 0.038 3.962 20 F -0.106 7.106 21 C -0.086 4.086 22 N -0.144 5.144 23 C -0.128 4.128 24 C -0.174 4.174 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.241 0.759 29 H 0.178 0.822 30 H 0.172 0.828 31 H 0.191 0.809 32 H 0.110 0.890 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.785 -14.117 -4.093 15.458 hybrid contribution -0.202 -0.326 0.101 0.396 sum -4.987 -14.443 -3.991 15.792 Atomic orbital electron populations 1.69834 1.07590 1.29438 1.34686 1.25947 0.94768 1.01415 0.92281 0.86331 0.80113 0.80061 0.80025 1.18779 1.20325 1.18959 1.19555 0.97834 0.91157 1.39926 0.90297 1.17676 0.91262 0.92155 0.88418 1.20645 1.03970 0.92557 1.06418 1.20236 0.93678 0.97710 0.97654 1.17162 0.98329 0.83862 1.11332 1.42802 1.53496 1.13407 1.16614 1.17692 0.80708 0.83054 0.85212 1.90805 1.48475 1.81685 1.19056 1.21539 0.98485 0.95782 0.89841 1.22100 0.95686 0.90963 1.01884 1.21681 0.98167 0.99409 0.94857 1.19052 0.98837 0.83757 0.94564 1.91539 1.82816 1.46153 1.90120 1.22945 0.97861 0.87225 1.00532 1.67670 1.07160 1.23520 1.16036 1.20236 0.99041 0.91640 1.01847 1.20902 0.99257 0.96358 1.00847 0.90710 0.88585 0.88095 0.75926 0.82213 0.82836 0.80937 0.88992 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.19 10.95 55.55 0.61 -19.58 16 2 C 0.07 1.83 5.15 -17.33 -0.09 1.74 16 3 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 7 C -0.46 -11.96 9.04 -37.86 -0.34 -12.30 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 10 C -0.22 -5.44 9.74 -39.26 -0.38 -5.82 16 11 C -0.07 -1.75 8.57 -39.78 -0.34 -2.09 16 12 C -0.01 -0.33 6.27 -83.61 -0.52 -0.85 16 13 N -0.62 -11.64 5.29 -10.55 -0.06 -11.70 16 14 C 0.55 10.01 7.52 -12.26 -0.09 9.92 16 15 O -0.52 -11.17 14.04 5.33 0.07 -11.09 16 16 C 0.08 1.16 6.75 -83.03 -0.56 0.60 16 17 C -0.09 -0.98 9.63 -39.06 -0.38 -1.36 16 18 C -0.11 -1.03 10.15 -39.26 -0.40 -1.43 16 19 C 0.06 0.56 7.36 -39.10 -0.29 0.27 16 20 F -0.13 -1.16 17.28 2.25 0.04 -1.12 16 21 C 0.08 0.74 11.17 -17.47 -0.20 0.55 16 22 N -0.43 -5.48 9.54 -9.75 -0.09 -5.57 16 23 C -0.11 -2.48 9.90 -39.78 -0.39 -2.87 16 24 C -0.15 -3.93 8.63 -39.26 -0.34 -4.27 16 25 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 26 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 27 H 0.10 2.35 6.47 -52.48 -0.34 2.01 16 28 H 0.41 6.52 8.15 -40.82 -0.33 6.18 16 29 H 0.16 1.74 7.64 -52.48 -0.40 1.34 16 30 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.12 3.17 6.18 -52.49 -0.32 2.85 16 LS Contribution 300.30 15.07 4.53 4.53 Total: -1.00 -29.44 300.30 -7.48 -36.92 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -2.64 Total: 9.91 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -4.92 Total: -15.64 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.46 Total: -36.85 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.44 -7.48 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125249692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.256 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds