Wall clock time and date at job start Tue Mar 31 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48497 * 109.47218 * 239.99894 * 3 2 1 5 5 H 1.48498 * 109.47336 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47182 * 119.99791 * 3 2 1 7 7 C 1.39916 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99985 * 196.83935 * 7 2 1 9 9 C 1.41128 * 119.99964 * 16.83391 * 7 2 1 10 10 C 1.40886 * 120.16103 * 205.61997 * 9 7 2 11 11 C 1.36354 * 119.82831 * 180.23361 * 10 9 7 12 12 C 1.39514 * 120.16902 * 359.52220 * 11 10 9 13 13 N 1.39104 * 119.84017 * 180.27261 * 12 11 10 14 14 C 1.34783 * 119.99708 * 34.48118 * 13 12 11 15 15 O 1.21538 * 119.99850 * 5.10611 * 14 13 12 16 16 C 1.47989 * 119.99817 * 185.09734 * 14 13 12 17 17 C 1.39417 * 119.69173 * 179.73116 * 16 14 13 18 18 C 1.38454 * 119.08989 * 179.73288 * 17 16 14 19 19 C 1.38905 * 118.47041 * 0.53070 * 18 17 16 20 20 F 1.35104 * 120.34690 * 179.74879 * 19 18 17 21 21 C 1.38870 * 119.30733 * 359.73092 * 19 18 17 22 22 N 1.31467 * 120.85999 * 0.02562 * 21 19 18 23 23 C 1.39519 * 120.32566 * 0.25632 * 12 11 10 24 24 C 1.36355 * 120.16666 * 359.97438 * 23 12 11 25 25 H 0.97005 * 119.99793 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.08345 * 0.03013 * 10 9 7 27 27 H 1.08003 * 119.91453 * 179.79646 * 11 10 9 28 28 H 0.96995 * 120.00666 * 214.48368 * 13 12 11 29 29 H 1.08004 * 120.45377 * 359.97438 * 17 16 14 30 30 H 1.08005 * 120.76188 * 180.23958 * 18 17 16 31 31 H 1.08003 * 119.57489 * 179.97438 * 21 19 18 32 32 H 1.07996 * 119.91720 * 179.97438 * 23 12 11 33 33 H 1.08002 * 120.08715 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2776 2.7465 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 3.0536 -1.2318 0.2704 9 6 1.3480 -2.4076 -0.3550 10 6 1.8156 -3.6449 0.1301 11 6 1.1754 -4.7966 -0.2206 12 6 0.0541 -4.7509 -1.0494 13 7 -0.5972 -5.9296 -1.3982 14 6 -0.6693 -6.9461 -0.5161 15 8 -0.2478 -6.8006 0.6145 16 6 -1.2618 -8.2393 -0.9243 17 6 -1.3280 -9.2883 -0.0083 18 6 -1.8899 -10.4910 -0.4018 19 6 -2.3578 -10.6086 -1.7044 20 9 -2.9084 -11.7666 -2.1299 21 6 -2.2541 -9.5233 -2.5645 22 7 -1.7199 -8.3918 -2.1611 23 6 -0.4175 -3.5290 -1.5299 24 6 0.2151 -2.3694 -1.1916 25 1 -0.4850 0.8401 -0.0004 26 1 2.6809 -3.6813 0.7753 27 1 1.5346 -5.7461 0.1478 28 1 -0.9994 -6.0200 -2.2762 29 1 -0.9498 -9.1632 0.9955 30 1 -1.9585 -11.3202 0.2869 31 1 -2.6161 -9.6101 -3.5783 32 1 -1.2859 -3.5014 -2.1714 33 1 -0.1513 -1.4242 -1.5639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125249692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:51 Heat of formation + Delta-G solvation = -38.095063 kcal Electronic energy + Delta-G solvation = -20538.261391 eV Core-core repulsion = 17056.501724 eV Total energy + Delta-G solvation = -3481.759667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.11930 -41.83067 -40.47022 -38.95120 -36.28331 -34.85317 -33.65131 -32.36897 -31.48889 -30.67424 -27.20491 -25.50960 -24.90216 -23.44592 -22.67196 -21.52705 -19.50261 -19.18991 -18.66579 -18.57800 -17.62707 -17.02908 -16.96909 -16.46763 -16.24129 -15.72262 -15.42678 -15.04488 -14.90686 -14.63925 -14.36900 -14.23552 -13.98412 -13.74317 -13.58512 -13.23817 -12.87936 -12.75874 -12.49040 -11.84803 -11.46151 -11.32506 -11.13735 -11.12184 -10.81980 -10.66127 -10.16353 -9.49598 -8.88010 -8.61380 -6.28810 -0.68804 -0.03392 0.79430 1.13013 1.40034 1.45499 1.52730 1.70874 2.11532 2.22489 2.58950 2.76823 2.79858 3.03618 3.58890 3.67640 3.71724 3.76815 4.10454 4.37474 4.46525 4.60328 4.70429 4.78426 4.91933 5.09138 5.12741 5.29055 5.39161 5.41175 5.64238 5.85538 5.98155 6.06735 6.33245 6.39720 6.63080 6.69975 6.91393 6.95730 7.24369 8.32199 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.056447 B = 0.002904 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.918253 B = 9638.490343 C = 9904.179356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.493 4.493 8 H 0.077 0.923 9 C 0.078 3.922 10 C -0.232 4.232 11 C -0.083 4.083 12 C -0.002 4.002 13 N -0.622 5.622 14 C 0.551 3.449 15 O -0.560 6.560 16 C 0.056 3.944 17 C -0.084 4.084 18 C -0.102 4.102 19 C 0.074 3.926 20 F -0.120 7.120 21 C 0.079 3.921 22 N -0.446 5.446 23 C -0.108 4.108 24 C -0.171 4.171 25 H 0.290 0.710 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.419 0.581 29 H 0.161 0.839 30 H 0.188 0.812 31 H 0.205 0.795 32 H 0.121 0.879 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.015 -16.791 -5.203 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.522 4.522 8 H 0.095 0.905 9 C 0.075 3.925 10 C -0.252 4.252 11 C -0.103 4.103 12 C -0.095 4.095 13 N -0.265 5.265 14 C 0.338 3.662 15 O -0.439 6.439 16 C -0.081 4.081 17 C -0.105 4.105 18 C -0.128 4.128 19 C 0.052 3.948 20 F -0.099 7.099 21 C -0.083 4.083 22 N -0.157 5.157 23 C -0.128 4.128 24 C -0.191 4.191 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.257 0.743 29 H 0.178 0.822 30 H 0.205 0.795 31 H 0.221 0.779 32 H 0.139 0.861 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.869 -15.860 -4.978 17.629 hybrid contribution -0.006 -0.106 0.320 0.337 sum -5.875 -15.966 -4.658 17.639 Atomic orbital electron populations 1.69878 1.08997 1.30820 1.35101 1.26796 0.95544 1.04573 0.91162 0.85201 0.78736 0.75394 0.80073 1.18293 1.19079 1.18547 1.19795 0.98103 0.92319 1.41996 0.90455 1.17998 0.92258 0.92874 0.89378 1.20788 1.04509 0.92895 1.06987 1.20352 0.94284 0.97387 0.98253 1.17238 0.97492 0.85262 1.09525 1.42730 1.53692 1.12491 1.17627 1.18300 0.79399 0.84014 0.84437 1.90777 1.49876 1.82640 1.20605 1.20939 1.01275 0.94412 0.91506 1.22140 0.95692 0.91167 1.01487 1.21965 0.96366 0.99144 0.95289 1.19093 0.97549 0.83634 0.94509 1.91571 1.82510 1.45760 1.90045 1.23430 0.96711 0.86318 1.01886 1.67576 1.07759 1.25064 1.15346 1.20478 0.99505 0.91022 1.01821 1.20909 0.99768 0.96882 1.01561 0.89917 0.88362 0.87797 0.74295 0.82151 0.79460 0.77866 0.86113 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.91 10.95 21.82 0.24 -42.68 16 2 C 0.03 1.74 5.15 85.24 0.44 2.18 16 3 Si 0.99 37.99 29.59 68.60 2.03 40.02 16 4 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 5 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.49 -26.87 9.04 23.39 0.21 -26.66 16 8 H 0.08 4.06 7.90 -2.91 -0.02 4.03 16 9 C 0.08 4.29 5.57 -21.27 -0.12 4.18 16 10 C -0.23 -12.18 9.74 22.48 0.22 -11.96 16 11 C -0.08 -4.07 8.57 22.14 0.19 -3.89 16 12 C 0.00 -0.08 6.27 38.60 0.24 0.16 16 13 N -0.62 -23.09 5.29 -305.58 -1.62 -24.71 16 14 C 0.55 20.03 7.52 86.83 0.65 20.68 16 15 O -0.56 -24.22 14.04 -3.83 -0.05 -24.27 16 16 C 0.06 1.50 6.75 41.87 0.28 1.78 16 17 C -0.08 -1.76 9.63 22.61 0.22 -1.54 16 18 C -0.10 -1.46 10.15 22.48 0.23 -1.23 16 19 C 0.07 1.10 7.36 22.58 0.17 1.26 16 20 F -0.12 -1.69 17.28 44.97 0.78 -0.91 16 21 C 0.08 1.28 11.17 84.90 0.95 2.22 16 22 N -0.45 -10.34 9.54 -184.75 -1.76 -12.11 16 23 C -0.11 -5.03 9.90 22.14 0.22 -4.81 16 24 C -0.17 -9.03 8.63 22.48 0.19 -8.83 16 25 H 0.29 13.63 8.30 -92.70 -0.77 12.86 16 26 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 27 H 0.10 4.98 6.47 -2.91 -0.02 4.96 16 28 H 0.42 13.08 8.15 -92.71 -0.76 12.32 16 29 H 0.16 3.31 7.64 -2.91 -0.02 3.29 16 30 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 31 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 33 H 0.11 6.03 6.18 -2.91 -0.02 6.01 16 Total: -1.00 -65.86 300.30 4.13 -61.74 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.42 Total: 29.37 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 4.09 Total: -26.46 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -3.14 Total: -79.49 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.78 Total: -0.91 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -65.86 4.13 -61.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125249692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.642 kcal (2) G-P(sol) polarization free energy of solvation -65.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds