Wall clock time and date at job start Tue Mar 31 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30206 * 126.79261 * 2 1 4 4 O 1.20920 * 111.64610 * 180.29156 * 3 2 1 5 5 C 1.34057 * 111.55483 * 359.69853 * 4 3 2 6 6 Cl 1.73602 * 126.80264 * 180.02562 * 5 4 3 7 7 C 1.35682 * 106.40626 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.01459 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47466 * 90.02294 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46490 * 120.00111 * 0.02562 * 12 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 15 15 C 1.50707 * 109.47162 * 90.00410 * 14 12 10 16 16 H 1.07998 * 119.99576 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00057 * 179.97438 * 15 14 12 18 18 N 1.31510 * 120.00061 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00225 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46861 * 89.99972 * 19 17 15 21 21 H 1.48498 * 109.47453 * 210.00313 * 19 17 15 22 22 H 1.48505 * 109.46941 * 330.00240 * 19 17 15 23 23 H 1.09007 * 109.46930 * 270.20164 * 1 2 3 24 24 H 1.09001 * 109.46764 * 30.19523 * 1 2 3 25 25 H 1.08995 * 109.47444 * 150.20042 * 1 2 3 26 26 H 1.09002 * 109.47120 * 330.02047 * 8 7 5 27 27 H 1.08998 * 109.46862 * 210.02849 * 8 7 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 30 30 H 1.08995 * 109.47620 * 89.99771 * 13 12 10 31 31 H 1.09006 * 109.47028 * 209.99878 * 13 12 10 32 32 H 1.09002 * 109.47109 * 329.99455 * 13 12 10 33 33 H 1.09000 * 109.47018 * 209.99971 * 14 12 10 34 34 H 1.09000 * 109.47828 * 330.00266 * 14 12 10 35 35 H 0.96997 * 120.00410 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0427 0.0000 4 8 3.4540 0.7268 -0.0057 5 6 3.6037 -0.6054 -0.0038 6 17 5.1011 -1.4838 -0.0096 7 6 2.3530 -1.1315 0.0035 8 6 1.9580 -2.5858 0.0089 9 6 1.8306 -3.0744 1.4531 10 6 1.4349 -4.5285 1.4584 11 8 1.2714 -5.1163 0.4102 12 7 1.2639 -5.1761 2.6281 13 6 1.4620 -4.4662 3.8941 14 6 0.8797 -6.5898 2.6332 15 6 2.1192 -7.4471 2.6293 16 1 3.0953 -6.9851 2.6232 17 6 2.0069 -8.8213 2.6336 18 7 3.0884 -9.5694 2.6308 19 14 0.3185 -9.6205 2.6449 20 1 -0.1365 -9.8359 1.2478 21 1 0.3935 -10.9263 3.3481 22 1 -0.6439 -8.7344 3.3478 23 1 -0.3633 0.0036 1.0277 24 1 -0.3633 0.8883 -0.5169 25 1 -0.3634 -0.8917 -0.5107 26 1 2.7193 -3.1710 -0.5069 27 1 1.0016 -2.7043 -0.5005 28 1 1.0694 -2.4892 1.9689 29 1 2.7871 -2.9559 1.9624 30 1 0.5195 -4.0207 4.2122 31 1 1.8070 -5.1677 4.6538 32 1 2.2070 -3.6822 3.7583 33 1 0.2929 -6.8036 3.5265 34 1 0.2844 -6.8079 1.7465 35 1 3.0095 -10.5362 2.6342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126730095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:18 Heat of formation + Delta-G solvation = -3.317493 kcal Electronic energy + Delta-G solvation = -20162.662262 eV Core-core repulsion = 16803.438119 eV Total energy + Delta-G solvation = -3359.224143 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.14736 -40.70129 -38.29622 -37.03208 -36.50227 -34.72008 -34.14757 -31.90581 -30.31690 -29.66365 -27.43314 -26.46277 -24.04639 -22.57442 -22.25129 -19.93858 -19.12749 -18.94275 -18.79084 -17.81222 -17.05883 -16.88295 -16.26643 -15.96128 -15.03895 -14.85859 -14.49232 -14.26761 -14.11925 -13.86635 -13.74137 -13.59136 -13.56244 -13.50176 -13.32532 -13.05153 -12.93454 -12.67632 -12.39328 -12.22068 -11.99896 -11.81212 -11.72628 -11.01102 -10.81526 -10.67035 -10.26798 -9.35844 -8.32318 -6.37452 0.00503 0.08275 0.97649 1.34812 1.38706 1.47094 1.83333 2.32631 2.34522 2.54593 3.00052 3.02546 3.46674 3.68300 3.73188 4.03111 4.21816 4.23819 4.41413 4.58037 4.66119 4.69759 4.70591 4.79092 4.85608 4.97279 5.00674 5.03945 5.05387 5.25891 5.48026 5.64282 6.25522 6.64290 6.73328 6.95247 7.23548 7.45066 8.84706 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.003898 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.366644 B = 7181.670903 C = 7778.875111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.042 3.958 3 N -0.368 5.368 4 O 0.098 5.902 5 C -0.002 4.002 6 Cl 0.056 6.944 7 C -0.163 4.163 8 C -0.024 4.024 9 C -0.118 4.118 10 C 0.499 3.501 11 O -0.592 6.592 12 N -0.609 5.609 13 C 0.076 3.924 14 C 0.222 3.778 15 C -0.536 4.536 16 H 0.028 0.972 17 C 0.010 3.990 18 N -0.947 5.947 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.277 1.277 22 H -0.236 1.236 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.021 0.979 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 21.209 -1.110 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 N -0.077 5.077 4 O 0.033 5.967 5 C -0.092 4.092 6 Cl 0.084 6.916 7 C -0.168 4.168 8 C -0.063 4.063 9 C -0.158 4.158 10 C 0.288 3.712 11 O -0.473 6.473 12 N -0.340 5.340 13 C -0.066 4.066 14 C 0.100 3.900 15 C -0.575 4.575 16 H 0.046 0.954 17 C -0.188 4.188 18 N -0.587 5.587 19 Si 0.771 3.229 20 H -0.201 1.201 21 H -0.202 1.202 22 H -0.159 1.159 23 H 0.121 0.879 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.143 0.857 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.872 21.970 -1.599 22.560 hybrid contribution 0.394 -1.801 -0.119 1.847 sum -4.478 20.169 -1.718 20.732 Atomic orbital electron populations 1.20443 0.82939 1.05157 1.05286 1.23823 1.00465 0.87025 1.00394 1.73940 0.88745 1.23686 1.21356 1.84887 1.22268 1.20889 1.68609 1.24768 0.91610 0.84814 1.07983 1.98486 1.27907 1.68595 1.96599 1.20860 0.89921 0.98071 1.07933 1.19600 1.03820 0.86424 0.96412 1.21604 1.04950 0.90598 0.98620 1.21244 0.76758 0.90222 0.82987 1.90645 1.53391 1.70409 1.32865 1.47970 1.67452 1.11323 1.07219 1.21976 1.02761 0.97273 0.84598 1.19337 0.94584 0.78846 0.97271 1.21591 0.93133 0.91805 1.50960 0.95384 1.25868 1.01255 0.97792 0.93884 1.70052 1.30928 1.05672 1.52077 0.85707 0.79649 0.78530 0.79009 1.20125 1.20231 1.15921 0.87902 0.89372 0.88487 0.90974 0.88623 0.85662 0.87982 0.89958 0.91809 0.89386 0.93233 0.96093 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.39 71.24 0.74 -0.28 16 2 C 0.04 0.81 7.32 43.55 0.32 1.13 16 3 N -0.37 -8.44 12.07 -49.44 -0.60 -9.04 16 4 O 0.10 2.25 11.20 71.48 0.80 3.05 16 5 C 0.00 -0.04 8.12 67.23 0.55 0.51 16 6 Cl 0.06 1.17 29.23 -2.72 -0.08 1.09 16 7 C -0.16 -3.47 5.58 -19.71 -0.11 -3.58 16 8 C -0.02 -0.58 4.90 29.85 0.15 -0.43 16 9 C -0.12 -2.85 4.23 29.85 0.13 -2.72 16 10 C 0.50 18.52 7.67 87.66 0.67 19.19 16 11 O -0.59 -27.73 15.56 -3.03 -0.05 -27.78 16 12 N -0.61 -23.28 2.86 -851.14 -2.43 -25.71 16 13 C 0.08 2.00 10.24 127.77 1.31 3.31 16 14 C 0.22 10.49 4.23 85.64 0.36 10.86 16 15 C -0.54 -31.15 9.94 25.60 0.25 -30.89 16 16 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 17 C 0.01 0.57 5.47 84.65 0.46 1.04 16 18 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 19 Si 0.95 43.78 27.47 68.60 1.88 45.66 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 23 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 1.08 7.65 -2.39 -0.02 1.06 16 26 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 27 H 0.10 2.20 7.61 -2.39 -0.02 2.18 16 28 H 0.13 2.14 8.11 -2.39 -0.02 2.12 16 29 H 0.10 2.27 7.40 -2.39 -0.02 2.26 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.85 8.07 -2.38 -0.02 1.83 16 32 H 0.09 1.82 6.44 -2.39 -0.02 1.80 16 33 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 34 H 0.02 1.06 6.85 -2.39 -0.02 1.04 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -75.77 319.34 5.71 -70.06 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.05 Total: 3.88 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.83 Total: -1.87 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -2.73 Total: -94.09 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.75 Total: -24.73 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Atomic # 17 Polarization: 1.17 SS G_CDS: -0.08 Total: 1.09 kcal Total: -75.77 5.71 -70.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126730095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.744 kcal (2) G-P(sol) polarization free energy of solvation -75.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds