Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48506 * 109.47123 * 270.00515 * 3 2 1 5 5 H 1.48502 * 109.46845 * 30.00175 * 3 2 1 6 6 H 1.48496 * 109.47200 * 150.00231 * 3 2 1 7 7 C 1.39918 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00245 * 197.06402 * 7 2 1 9 9 C 1.41129 * 119.99693 * 17.06618 * 7 2 1 10 10 C 1.40886 * 120.15830 * 205.77734 * 9 7 2 11 11 C 1.36355 * 119.82876 * 180.22718 * 10 9 7 12 12 C 1.39519 * 120.16943 * 359.48081 * 11 10 9 13 13 N 1.39105 * 119.83795 * 180.27875 * 12 11 10 14 14 C 1.34768 * 120.00114 * 35.91253 * 13 12 11 15 15 O 1.21526 * 120.00297 * 355.50349 * 14 13 12 16 16 C 1.48101 * 119.99789 * 175.50304 * 14 13 12 17 17 C 1.39263 * 119.70989 * 179.97438 * 16 14 13 18 18 C 1.38649 * 119.12126 * 179.97438 * 17 16 14 19 19 C 1.38507 * 118.52386 * 0.02562 * 18 17 16 20 20 C 1.38891 * 119.33644 * 359.97438 * 19 18 17 21 21 F 1.35103 * 119.58126 * 180.02562 * 20 19 18 22 22 N 1.31712 * 120.84232 * 359.72630 * 20 19 18 23 23 C 1.39515 * 120.32373 * 0.30015 * 12 11 10 24 24 C 1.36361 * 120.16926 * 359.95363 * 23 12 11 25 25 H 0.96996 * 119.99748 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.08578 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.91671 * 179.75670 * 11 10 9 28 28 H 0.97004 * 119.99308 * 215.91546 * 13 12 11 29 29 H 1.08010 * 120.44036 * 359.97438 * 17 16 14 30 30 H 1.08001 * 120.73886 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.33328 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.91566 * 179.97438 * 23 12 11 33 33 H 1.07994 * 120.08748 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4901 2.0465 -1.4001 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7000 7 6 2.0083 -1.2117 -0.0005 8 1 3.0526 -1.2324 0.2739 9 6 1.3492 -2.4068 -0.3598 10 6 1.8131 -3.6448 0.1271 11 6 1.1741 -4.7958 -0.2280 12 6 0.0570 -4.7487 -1.0625 13 7 -0.5932 -5.9267 -1.4157 14 6 -0.6956 -6.9330 -0.5252 15 8 -0.1501 -6.8445 0.5572 16 6 -1.4729 -8.1468 -0.8656 17 6 -1.5743 -9.1833 0.0590 18 6 -2.3054 -10.3138 -0.2722 19 6 -2.9098 -10.3693 -1.5172 20 6 -2.7677 -9.2991 -2.3910 21 9 -3.3555 -9.3478 -3.6064 22 7 -2.0719 -8.2348 -2.0476 23 6 -0.4109 -3.5261 -1.5449 24 6 0.2209 -2.3672 -1.2025 25 1 -0.4849 0.8400 0.0004 26 1 2.6751 -3.6825 0.7767 27 1 1.5308 -5.7460 0.1413 28 1 -0.9729 -6.0237 -2.3031 29 1 -1.0898 -9.1075 1.0213 30 1 -2.4015 -11.1330 0.4250 31 1 -3.4859 -11.2361 -1.8057 32 1 -1.2760 -3.4974 -2.1908 33 1 -0.1426 -1.4215 -1.5763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131161860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = -14.873693 kcal Electronic energy + Delta-G solvation = -20654.245711 eV Core-core repulsion = 17173.492998 eV Total energy + Delta-G solvation = -3480.752713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.25065 -40.68499 -39.10349 -37.19333 -34.57925 -33.36570 -32.70103 -31.26714 -29.59008 -28.92990 -25.81216 -24.33387 -23.61469 -21.78774 -20.95874 -20.02986 -18.37331 -17.77854 -17.31182 -16.53022 -16.43325 -16.36017 -15.84261 -15.22224 -14.77987 -14.30887 -14.05080 -13.92716 -13.50792 -13.33250 -12.84606 -12.71963 -12.50902 -12.12600 -11.85198 -11.35534 -11.14703 -11.05468 -10.78918 -10.43473 -10.40535 -10.01406 -9.61038 -9.45527 -9.30829 -9.15795 -8.93449 -7.55996 -7.02575 -6.77288 -4.32981 0.29856 0.75347 2.47518 2.85976 3.05790 3.07212 3.09914 3.09989 3.21426 3.54807 3.73942 3.91159 4.12124 4.52231 4.60411 4.68059 4.69736 5.11402 5.42034 5.52262 5.66956 5.72824 6.20500 6.23125 6.42278 6.74220 6.89214 7.01644 7.13550 7.19066 7.26952 7.58044 7.70571 7.83112 8.01126 8.24816 8.25587 8.55278 8.66294 8.85257 8.96460 10.14498 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.040241 B = 0.003151 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.644320 B = 8883.723709 C = 9327.938831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.108 3.892 10 C -0.218 4.218 11 C -0.073 4.073 12 C -0.019 4.019 13 N -0.620 5.620 14 C 0.548 3.452 15 O -0.521 6.521 16 C 0.130 3.870 17 C -0.126 4.126 18 C -0.052 4.052 19 C -0.180 4.180 20 C 0.306 3.694 21 F -0.111 7.111 22 N -0.493 5.493 23 C -0.106 4.106 24 C -0.154 4.154 25 H 0.281 0.719 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.406 0.594 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.092 0.908 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 -15.804 -2.929 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.106 3.894 10 C -0.238 4.238 11 C -0.092 4.092 12 C -0.111 4.111 13 N -0.261 5.261 14 C 0.332 3.668 15 O -0.397 6.397 16 C -0.008 4.008 17 C -0.147 4.147 18 C -0.078 4.078 19 C -0.202 4.202 20 C 0.150 3.850 21 F -0.090 7.090 22 N -0.210 5.210 23 C -0.127 4.127 24 C -0.174 4.174 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.241 0.759 29 H 0.177 0.823 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.110 0.890 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.557 -14.857 -2.763 16.101 hybrid contribution -0.292 0.020 -0.189 0.348 sum -5.849 -14.837 -2.952 16.219 Atomic orbital electron populations 1.69842 1.07599 1.29346 1.34711 1.25953 0.94763 1.01429 0.92268 0.86276 0.80486 0.80424 0.79338 1.19232 1.20304 1.18562 1.19599 0.97958 0.91169 1.39746 0.90225 1.17693 0.91179 0.92204 0.88357 1.20666 1.04070 0.92587 1.06448 1.20373 0.93508 0.97959 0.97404 1.17188 0.98740 0.83740 1.11421 1.42794 1.53955 1.13973 1.15391 1.17734 0.81683 0.82683 0.84694 1.90793 1.46684 1.79339 1.22889 1.21201 0.95488 0.95661 0.88455 1.22241 0.98418 0.92545 1.01520 1.21538 0.93208 0.97735 0.95289 1.22017 1.03522 0.99687 0.94948 1.18077 0.93542 0.91205 0.82127 1.91650 1.80592 1.96040 1.40699 1.66884 1.09069 1.25368 1.19717 1.20253 0.99047 0.91657 1.01700 1.20892 0.99321 0.96332 1.00851 0.90763 0.88568 0.87530 0.75859 0.82346 0.82913 0.83085 0.88999 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.27 10.97 55.55 0.61 -19.66 16 2 C 0.07 1.84 5.14 -17.33 -0.09 1.75 16 3 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -12.01 9.04 -37.86 -0.34 -12.35 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 9 C 0.11 2.90 5.57 -106.80 -0.59 2.30 16 10 C -0.22 -5.51 9.74 -39.26 -0.38 -5.89 16 11 C -0.07 -1.75 8.61 -39.78 -0.34 -2.09 16 12 C -0.02 -0.42 6.29 -83.61 -0.53 -0.95 16 13 N -0.62 -11.91 5.28 -10.52 -0.06 -11.96 16 14 C 0.55 10.13 7.64 -12.22 -0.09 10.04 16 15 O -0.52 -11.03 13.77 5.34 0.07 -10.96 16 16 C 0.13 1.90 6.75 -83.02 -0.56 1.34 16 17 C -0.13 -1.42 9.63 -39.05 -0.38 -1.79 16 18 C -0.05 -0.41 10.16 -39.33 -0.40 -0.81 16 19 C -0.18 -1.49 10.09 -39.24 -0.40 -1.88 16 20 C 0.31 3.57 8.41 -17.36 -0.15 3.42 16 21 F -0.11 -1.29 17.29 2.25 0.04 -1.25 16 22 N -0.49 -6.97 9.56 -10.14 -0.10 -7.06 16 23 C -0.11 -2.49 9.90 -39.78 -0.39 -2.88 16 24 C -0.15 -3.97 8.63 -39.26 -0.34 -4.31 16 25 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 26 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 27 H 0.11 2.50 6.26 -52.48 -0.33 2.17 16 28 H 0.41 6.88 8.15 -40.82 -0.33 6.55 16 29 H 0.16 1.68 7.64 -52.48 -0.40 1.28 16 30 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 33 H 0.12 3.19 6.20 -52.49 -0.33 2.86 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -29.83 300.05 -7.55 -37.38 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -2.63 Total: 9.65 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -4.98 Total: -14.11 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.46 Total: -38.68 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.83 -7.55 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131161860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.507 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds