Wall clock time and date at job start Tue Mar 31 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48506 * 109.47123 * 270.00515 * 3 2 1 5 5 H 1.48502 * 109.46845 * 30.00175 * 3 2 1 6 6 H 1.48496 * 109.47200 * 150.00231 * 3 2 1 7 7 C 1.39918 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00245 * 197.06402 * 7 2 1 9 9 C 1.41129 * 119.99693 * 17.06618 * 7 2 1 10 10 C 1.40886 * 120.15830 * 205.77734 * 9 7 2 11 11 C 1.36355 * 119.82876 * 180.22718 * 10 9 7 12 12 C 1.39519 * 120.16943 * 359.48081 * 11 10 9 13 13 N 1.39105 * 119.83795 * 180.27875 * 12 11 10 14 14 C 1.34768 * 120.00114 * 35.91253 * 13 12 11 15 15 O 1.21526 * 120.00297 * 355.50349 * 14 13 12 16 16 C 1.48101 * 119.99789 * 175.50304 * 14 13 12 17 17 C 1.39263 * 119.70989 * 179.97438 * 16 14 13 18 18 C 1.38649 * 119.12126 * 179.97438 * 17 16 14 19 19 C 1.38507 * 118.52386 * 0.02562 * 18 17 16 20 20 C 1.38891 * 119.33644 * 359.97438 * 19 18 17 21 21 F 1.35103 * 119.58126 * 180.02562 * 20 19 18 22 22 N 1.31712 * 120.84232 * 359.72630 * 20 19 18 23 23 C 1.39515 * 120.32373 * 0.30015 * 12 11 10 24 24 C 1.36361 * 120.16926 * 359.95363 * 23 12 11 25 25 H 0.96996 * 119.99748 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.08578 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.91671 * 179.75670 * 11 10 9 28 28 H 0.97004 * 119.99308 * 215.91546 * 13 12 11 29 29 H 1.08010 * 120.44036 * 359.97438 * 17 16 14 30 30 H 1.08001 * 120.73886 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.33328 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.91566 * 179.97438 * 23 12 11 33 33 H 1.07994 * 120.08748 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4901 2.0465 -1.4001 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7000 7 6 2.0083 -1.2117 -0.0005 8 1 3.0526 -1.2324 0.2739 9 6 1.3492 -2.4068 -0.3598 10 6 1.8131 -3.6448 0.1271 11 6 1.1741 -4.7958 -0.2280 12 6 0.0570 -4.7487 -1.0625 13 7 -0.5932 -5.9267 -1.4157 14 6 -0.6956 -6.9330 -0.5252 15 8 -0.1501 -6.8445 0.5572 16 6 -1.4729 -8.1468 -0.8656 17 6 -1.5743 -9.1833 0.0590 18 6 -2.3054 -10.3138 -0.2722 19 6 -2.9098 -10.3693 -1.5172 20 6 -2.7677 -9.2991 -2.3910 21 9 -3.3555 -9.3478 -3.6064 22 7 -2.0719 -8.2348 -2.0476 23 6 -0.4109 -3.5261 -1.5449 24 6 0.2209 -2.3672 -1.2025 25 1 -0.4849 0.8400 0.0004 26 1 2.6751 -3.6825 0.7767 27 1 1.5308 -5.7460 0.1413 28 1 -0.9729 -6.0237 -2.3031 29 1 -1.0898 -9.1075 1.0213 30 1 -2.4015 -11.1330 0.4250 31 1 -3.4859 -11.2361 -1.8057 32 1 -1.2760 -3.4974 -2.1908 33 1 -0.1426 -1.4215 -1.5763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131161860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:14 Heat of formation + Delta-G solvation = -33.208746 kcal Electronic energy + Delta-G solvation = -20655.040779 eV Core-core repulsion = 17173.492998 eV Total energy + Delta-G solvation = -3481.547780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.10281 -41.84579 -40.47898 -38.96774 -36.30290 -34.90501 -33.82196 -32.25820 -31.51148 -30.74367 -27.35005 -25.67812 -24.50305 -23.47784 -22.70986 -21.61102 -19.63765 -19.26096 -18.74498 -18.02486 -17.27035 -17.19967 -17.14758 -16.91605 -16.27106 -15.77455 -15.61954 -15.00649 -14.87618 -14.51632 -14.24702 -14.11692 -13.96552 -13.70214 -13.29846 -13.24283 -12.88257 -12.77905 -12.53249 -11.90280 -11.49201 -11.41934 -11.18158 -11.15667 -10.82129 -10.64479 -10.20018 -9.51133 -8.91895 -8.63418 -6.30843 -0.61750 -0.03980 0.78474 1.11734 1.39485 1.44768 1.53442 1.68055 2.01657 2.21449 2.39140 2.57200 2.74233 3.26550 3.65636 3.71958 3.80415 3.93692 4.25364 4.35317 4.49043 4.63066 4.85207 4.88492 4.96623 5.08017 5.10919 5.27495 5.37961 5.45786 5.63177 5.83358 5.94455 6.05188 6.24564 6.32796 6.60286 6.63911 6.89846 6.93423 7.19296 8.30897 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.040241 B = 0.003151 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.644320 B = 8883.723709 C = 9327.938831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.492 4.492 8 H 0.078 0.922 9 C 0.079 3.921 10 C -0.233 4.233 11 C -0.082 4.082 12 C -0.007 4.007 13 N -0.624 5.624 14 C 0.550 3.450 15 O -0.554 6.554 16 C 0.098 3.902 17 C -0.121 4.121 18 C -0.033 4.033 19 C -0.149 4.149 20 C 0.286 3.714 21 F -0.115 7.115 22 N -0.520 5.520 23 C -0.108 4.108 24 C -0.171 4.171 25 H 0.290 0.710 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.417 0.583 29 H 0.161 0.839 30 H 0.204 0.796 31 H 0.195 0.805 32 H 0.117 0.883 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 -18.097 -2.980 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.521 4.521 8 H 0.096 0.904 9 C 0.076 3.924 10 C -0.253 4.253 11 C -0.102 4.102 12 C -0.100 4.100 13 N -0.266 5.266 14 C 0.337 3.663 15 O -0.432 6.432 16 C -0.039 4.039 17 C -0.142 4.142 18 C -0.058 4.058 19 C -0.170 4.170 20 C 0.130 3.870 21 F -0.095 7.095 22 N -0.238 5.238 23 C -0.128 4.128 24 C -0.191 4.191 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.128 0.872 28 H 0.254 0.746 29 H 0.179 0.821 30 H 0.221 0.779 31 H 0.212 0.788 32 H 0.135 0.865 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.836 -17.182 -2.830 18.707 hybrid contribution -0.039 0.445 -0.197 0.488 sum -6.875 -16.737 -3.027 18.346 Atomic orbital electron populations 1.69885 1.09043 1.30792 1.35050 1.26815 0.95536 1.04626 0.91119 0.85134 0.78966 0.75567 0.79616 1.18462 1.19218 1.18256 1.19829 0.98208 0.92306 1.41772 0.90380 1.18009 0.92112 0.92966 0.89269 1.20816 1.04600 0.92870 1.06977 1.20491 0.94013 0.97697 0.97953 1.17270 0.97953 0.85075 1.09738 1.42747 1.54267 1.13239 1.16377 1.18365 0.80818 0.83312 0.83832 1.90759 1.48022 1.80300 1.24120 1.20555 0.97854 0.95251 0.90201 1.22443 0.98310 0.92688 1.00775 1.22075 0.90718 0.97292 0.95696 1.22521 1.01538 0.99210 0.93742 1.18456 0.94008 0.91800 0.82744 1.91643 1.80649 1.96053 1.41121 1.66594 1.10019 1.27333 1.19875 1.20474 0.99466 0.91171 1.01732 1.20887 0.99896 0.96751 1.01602 0.89914 0.88212 0.87161 0.74603 0.82104 0.77926 0.78801 0.86476 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.21 10.97 21.82 0.24 -42.97 16 2 C 0.03 1.74 5.14 85.24 0.44 2.18 16 3 Si 0.99 38.25 29.59 68.60 2.03 40.28 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.49 -26.98 9.04 23.39 0.21 -26.76 16 8 H 0.08 4.12 7.90 -2.91 -0.02 4.10 16 9 C 0.08 4.42 5.57 -21.27 -0.12 4.30 16 10 C -0.23 -12.31 9.74 22.48 0.22 -12.10 16 11 C -0.08 -4.07 8.61 22.14 0.19 -3.88 16 12 C -0.01 -0.33 6.29 38.60 0.24 -0.09 16 13 N -0.62 -24.28 5.28 -305.50 -1.61 -25.89 16 14 C 0.55 20.54 7.64 86.86 0.66 21.21 16 15 O -0.55 -23.88 13.77 -3.80 -0.05 -23.93 16 16 C 0.10 2.77 6.75 41.86 0.28 3.06 16 17 C -0.12 -2.40 9.63 22.61 0.22 -2.19 16 18 C -0.03 -0.34 10.16 22.43 0.23 -0.12 16 19 C -0.15 -1.72 10.09 22.49 0.23 -1.49 16 20 C 0.29 5.93 8.41 84.87 0.71 6.65 16 21 F -0.12 -2.46 17.29 44.97 0.78 -1.68 16 22 N -0.52 -14.13 9.56 -185.99 -1.78 -15.91 16 23 C -0.11 -5.18 9.90 22.14 0.22 -4.96 16 24 C -0.17 -9.18 8.63 22.48 0.19 -8.99 16 25 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 26 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 27 H 0.11 5.35 6.26 -2.91 -0.02 5.33 16 28 H 0.42 14.25 8.15 -92.71 -0.76 13.50 16 29 H 0.16 3.09 7.64 -2.91 -0.02 3.07 16 30 H 0.20 0.19 8.06 -2.91 -0.02 0.16 16 31 H 0.19 0.63 8.06 -2.91 -0.02 0.60 16 32 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 33 H 0.11 6.08 6.20 -2.91 -0.02 6.06 16 Total: -1.00 -68.87 300.05 3.95 -64.92 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.42 Total: 28.37 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.93 Total: -23.19 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -3.15 Total: -84.77 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.78 Total: -1.68 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -68.87 3.95 -64.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131161860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.714 kcal (2) G-P(sol) polarization free energy of solvation -68.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds