Wall clock time and date at job start Tue Mar 31 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00300 * 2 1 4 4 H 1.48491 * 109.47727 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46735 * 300.00126 * 3 2 1 6 6 H 1.48509 * 109.47102 * 59.99446 * 3 2 1 7 7 C 1.38818 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00181 * 161.11050 * 7 2 1 9 9 N 1.36934 * 119.99366 * 341.11629 * 7 2 1 10 10 C 1.46497 * 120.00320 * 321.04003 * 9 7 2 11 11 N 1.46501 * 109.47370 * 270.00405 * 10 9 7 12 12 C 1.44535 * 120.61490 * 89.99948 * 11 10 9 13 13 C 1.53429 * 111.71848 * 179.97438 * 12 11 10 14 14 S 1.82068 * 103.93557 * 0.02562 * 13 12 11 15 15 C 1.33008 * 120.61369 * 269.72215 * 11 10 9 16 16 S 1.71195 * 125.20124 * 359.97438 * 15 11 10 17 17 C 1.46511 * 119.99598 * 141.04784 * 9 7 2 18 18 C 1.54260 * 110.03354 * 60.98092 * 17 9 7 19 19 C 1.54963 * 104.15927 * 217.13486 * 18 17 9 20 20 C 1.54882 * 102.77632 * 37.89401 * 19 18 17 21 21 C 1.53870 * 110.02824 * 303.76369 * 17 9 7 22 22 H 0.97000 * 119.99654 * 355.02324 * 1 2 3 23 23 H 1.08996 * 109.47191 * 30.00448 * 10 9 7 24 24 H 1.09005 * 109.46737 * 150.00687 * 10 9 7 25 25 H 1.09001 * 109.04276 * 300.57029 * 12 11 10 26 26 H 1.08995 * 109.04089 * 59.50139 * 12 11 10 27 27 H 1.09002 * 110.53691 * 118.61417 * 13 12 11 28 28 H 1.08996 * 110.53205 * 241.24506 * 13 12 11 29 29 H 1.09000 * 110.01145 * 182.37668 * 17 9 7 30 30 H 1.09004 * 110.48920 * 335.78893 * 18 17 9 31 31 H 1.09007 * 110.48566 * 98.42779 * 18 17 9 32 32 H 1.08993 * 110.72029 * 279.57097 * 19 18 17 33 33 H 1.09007 * 110.91841 * 156.29984 * 19 18 17 34 34 H 1.09006 * 110.48786 * 203.40758 * 20 19 18 35 35 H 1.08999 * 110.60392 * 80.81673 * 20 19 18 36 36 H 1.09004 * 110.03522 * 238.56848 * 21 17 9 37 37 H 1.09002 * 110.03830 * 0.02562 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0467 -1.2275 -0.3022 9 7 1.3809 -2.3559 0.3849 10 6 0.4364 -2.3371 1.5046 11 7 1.1544 -2.6024 2.7537 12 6 1.7123 -1.5163 3.5271 13 6 2.4171 -2.0234 4.7920 14 16 2.2083 -3.8305 4.7157 15 6 1.3002 -3.8469 3.1999 16 16 0.7019 -5.2503 2.4231 17 6 1.6521 -3.6093 -0.3237 18 6 3.1459 -3.9738 -0.1996 19 6 3.5028 -4.5844 -1.5784 20 6 2.6921 -3.7052 -2.5626 21 6 1.3634 -3.4388 -1.8254 22 1 -0.4849 0.8369 0.0729 23 1 -0.0410 -1.3588 1.5608 24 1 -0.3231 -3.1039 1.3521 25 1 2.4313 -0.9746 2.9123 26 1 0.9103 -0.8375 3.8169 27 1 3.4746 -1.7600 4.7723 28 1 1.9398 -1.6182 5.6841 29 1 1.0369 -4.4102 0.0863 30 1 3.7423 -3.0809 -0.0120 31 1 3.2951 -4.7069 0.5932 32 1 3.1814 -5.6244 -1.6345 33 1 4.5716 -4.5008 -1.7762 34 1 2.5107 -4.2425 -3.4936 35 1 3.2137 -2.7686 -2.7592 36 1 0.6087 -4.1578 -2.1445 37 1 1.0219 -2.4236 -2.0272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153414623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:15 Heat of formation + Delta-G solvation = 35.075693 kcal Electronic energy + Delta-G solvation = -19702.960763 eV Core-core repulsion = 16926.031145 eV Total energy + Delta-G solvation = -2776.929618 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.01280 -37.41400 -34.24615 -31.78152 -30.79112 -27.80226 -27.55678 -26.34151 -25.12093 -22.73716 -21.18325 -19.96069 -19.18122 -18.18066 -16.99809 -16.27107 -15.71068 -15.40943 -14.90922 -14.41807 -14.28986 -13.70626 -13.58332 -13.10792 -12.75612 -12.53787 -12.35812 -11.65776 -11.53274 -11.26055 -11.22273 -11.01889 -10.91019 -10.54568 -10.47553 -10.36681 -10.34606 -10.22045 -10.18538 -9.77027 -9.55737 -8.84902 -8.05011 -7.32461 -7.14379 -6.84832 -6.21337 -3.81480 1.20826 1.32594 1.92804 2.63959 3.05491 3.20090 3.21501 3.36949 4.15380 4.31635 4.68373 4.95231 5.15268 5.28330 5.48320 5.50086 5.51306 5.68670 5.75194 6.07894 6.24159 6.31257 6.42761 6.46376 6.58971 6.62537 6.63066 6.68529 6.90425 7.01769 7.07281 7.15879 7.22305 7.35947 7.53169 8.17507 8.78560 9.38260 9.98122 10.79280 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.009241 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.581017 B = 3029.094210 C = 4387.955876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.019 3.981 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.547 5.547 10 C 0.316 3.684 11 N -0.502 5.502 12 C 0.076 3.924 13 C -0.122 4.122 14 S -0.105 6.105 15 C 0.337 3.663 16 S -0.554 6.554 17 C 0.154 3.846 18 C -0.129 4.129 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.129 4.129 22 H 0.260 0.740 23 H 0.128 0.872 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 -0.399 5.741 7.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.183 4.183 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.263 5.263 10 C 0.108 3.892 11 N -0.206 5.206 12 C -0.052 4.052 13 C -0.273 4.273 14 S 0.123 5.877 15 C -0.036 4.036 16 S -0.423 6.423 17 C 0.047 3.953 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.168 4.168 22 H 0.071 0.929 23 H 0.145 0.855 24 H 0.105 0.895 25 H 0.127 0.873 26 H 0.113 0.887 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.984 -1.753 5.756 7.216 hybrid contribution 0.537 2.731 -0.316 2.801 sum 4.521 0.978 5.440 7.141 Atomic orbital electron populations 1.69962 1.05478 1.26799 1.49929 1.25292 0.95066 0.99021 0.98926 0.86365 0.79926 0.83587 0.77843 1.19815 1.21093 1.21157 1.19146 0.93799 0.84969 1.41264 0.91409 1.44477 1.49064 1.05170 1.27639 1.22388 0.88891 1.04455 0.73514 1.50291 1.44738 1.02586 1.22956 1.22022 1.00297 0.91267 0.91597 1.24474 1.06031 0.95273 1.01510 1.87039 1.66006 1.07989 1.26659 1.27733 0.88615 0.93505 0.93721 1.92705 1.62718 1.21372 1.65535 1.21628 0.94167 0.88405 0.91066 1.22723 0.98949 0.99600 0.95582 1.22419 0.98491 0.98697 0.96329 1.22255 0.97254 0.98884 0.97073 1.22484 0.95635 1.02357 0.96303 0.92931 0.85523 0.89525 0.87303 0.88720 0.86849 0.86905 0.89459 0.91783 0.92996 0.92405 0.93047 0.93354 0.92208 0.93707 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.62 11.41 55.49 0.63 -20.98 16 2 C 0.02 0.43 5.01 -17.43 -0.09 0.35 16 3 Si 0.89 18.62 29.60 -169.99 -5.03 13.58 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.29 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.26 -6.06 7.83 -15.06 -0.12 -6.17 16 8 H 0.07 1.64 6.82 -52.49 -0.36 1.28 16 9 N -0.55 -11.97 2.61 -168.07 -0.44 -12.41 16 10 C 0.32 6.61 5.52 -63.75 -0.35 6.26 16 11 N -0.50 -9.07 3.02 -179.32 -0.54 -9.61 16 12 C 0.08 1.10 6.80 -4.87 -0.03 1.07 16 13 C -0.12 -1.38 7.42 37.38 0.28 -1.11 16 14 S -0.11 -1.59 23.24 -107.50 -2.50 -4.09 16 15 C 0.34 6.33 7.47 53.27 0.40 6.73 16 16 S -0.55 -11.94 27.33 -107.50 -2.94 -14.87 16 17 C 0.15 3.21 3.28 -66.81 -0.22 2.99 16 18 C -0.13 -2.52 6.42 -25.04 -0.16 -2.68 16 19 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 20 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 21 C -0.13 -2.59 6.25 -25.61 -0.16 -2.75 16 22 H 0.26 6.20 8.32 -40.82 -0.34 5.86 16 23 H 0.13 2.84 5.46 -51.93 -0.28 2.55 16 24 H 0.09 1.93 6.76 -51.93 -0.35 1.58 16 25 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.95 5.58 -51.93 -0.29 1.66 16 30 H 0.06 1.33 6.53 -51.93 -0.34 0.99 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.91 7.23 -51.93 -0.38 1.53 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -25.98 316.38 -12.20 -38.18 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.36 Total: 5.21 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.80 Total: 0.21 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.35 Total: -43.00 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: -13.52 SS G_CDS: -5.44 Total: -18.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.98 -12.20 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153414623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.259 kcal (2) G-P(sol) polarization free energy of solvation -25.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds