Wall clock time and date at job start Tue Mar 31 2020 06:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00300 * 2 1 4 4 H 1.48491 * 109.47727 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46735 * 300.00126 * 3 2 1 6 6 H 1.48509 * 109.47102 * 59.99446 * 3 2 1 7 7 C 1.38818 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00181 * 161.11050 * 7 2 1 9 9 N 1.36934 * 119.99366 * 341.11629 * 7 2 1 10 10 C 1.46497 * 120.00320 * 321.04003 * 9 7 2 11 11 N 1.46501 * 109.47370 * 270.00405 * 10 9 7 12 12 C 1.44535 * 120.61490 * 89.99948 * 11 10 9 13 13 C 1.53429 * 111.71848 * 179.97438 * 12 11 10 14 14 S 1.82068 * 103.93557 * 0.02562 * 13 12 11 15 15 C 1.33008 * 120.61369 * 269.72215 * 11 10 9 16 16 S 1.71195 * 125.20124 * 359.97438 * 15 11 10 17 17 C 1.46511 * 119.99598 * 141.04784 * 9 7 2 18 18 C 1.54260 * 110.03354 * 60.98092 * 17 9 7 19 19 C 1.54963 * 104.15927 * 217.13486 * 18 17 9 20 20 C 1.54882 * 102.77632 * 37.89401 * 19 18 17 21 21 C 1.53870 * 110.02824 * 303.76369 * 17 9 7 22 22 H 0.97000 * 119.99654 * 355.02324 * 1 2 3 23 23 H 1.08996 * 109.47191 * 30.00448 * 10 9 7 24 24 H 1.09005 * 109.46737 * 150.00687 * 10 9 7 25 25 H 1.09001 * 109.04276 * 300.57029 * 12 11 10 26 26 H 1.08995 * 109.04089 * 59.50139 * 12 11 10 27 27 H 1.09002 * 110.53691 * 118.61417 * 13 12 11 28 28 H 1.08996 * 110.53205 * 241.24506 * 13 12 11 29 29 H 1.09000 * 110.01145 * 182.37668 * 17 9 7 30 30 H 1.09004 * 110.48920 * 335.78893 * 18 17 9 31 31 H 1.09007 * 110.48566 * 98.42779 * 18 17 9 32 32 H 1.08993 * 110.72029 * 279.57097 * 19 18 17 33 33 H 1.09007 * 110.91841 * 156.29984 * 19 18 17 34 34 H 1.09006 * 110.48786 * 203.40758 * 20 19 18 35 35 H 1.08999 * 110.60392 * 80.81673 * 20 19 18 36 36 H 1.09004 * 110.03522 * 238.56848 * 21 17 9 37 37 H 1.09002 * 110.03830 * 0.02562 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0467 -1.2275 -0.3022 9 7 1.3809 -2.3559 0.3849 10 6 0.4364 -2.3371 1.5046 11 7 1.1544 -2.6024 2.7537 12 6 1.7123 -1.5163 3.5271 13 6 2.4171 -2.0234 4.7920 14 16 2.2083 -3.8305 4.7157 15 6 1.3002 -3.8469 3.1999 16 16 0.7019 -5.2503 2.4231 17 6 1.6521 -3.6093 -0.3237 18 6 3.1459 -3.9738 -0.1996 19 6 3.5028 -4.5844 -1.5784 20 6 2.6921 -3.7052 -2.5626 21 6 1.3634 -3.4388 -1.8254 22 1 -0.4849 0.8369 0.0729 23 1 -0.0410 -1.3588 1.5608 24 1 -0.3231 -3.1039 1.3521 25 1 2.4313 -0.9746 2.9123 26 1 0.9103 -0.8375 3.8169 27 1 3.4746 -1.7600 4.7723 28 1 1.9398 -1.6182 5.6841 29 1 1.0369 -4.4102 0.0863 30 1 3.7423 -3.0809 -0.0120 31 1 3.2951 -4.7069 0.5932 32 1 3.1814 -5.6244 -1.6345 33 1 4.5716 -4.5008 -1.7762 34 1 2.5107 -4.2425 -3.4936 35 1 3.2137 -2.7686 -2.7592 36 1 0.6087 -4.1578 -2.1445 37 1 1.0219 -2.4236 -2.0272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153414623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:14 Heat of formation + Delta-G solvation = 23.196643 kcal Electronic energy + Delta-G solvation = -19703.475877 eV Core-core repulsion = 16926.031145 eV Total energy + Delta-G solvation = -2777.444732 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52901 -38.96235 -35.89105 -33.31467 -32.21584 -29.37133 -29.12136 -28.03798 -26.52819 -24.30416 -22.62453 -21.44877 -20.83661 -19.63855 -18.59337 -17.73410 -17.22116 -17.00357 -16.44511 -16.00653 -15.78416 -15.18687 -14.88342 -14.65067 -14.11634 -13.98921 -13.66071 -13.33197 -12.96223 -12.90293 -12.80275 -12.62729 -12.40984 -12.14963 -12.05961 -11.86508 -11.82220 -11.78865 -11.72382 -11.30159 -11.22768 -10.63982 -9.33301 -8.93049 -8.85567 -8.53761 -7.99201 -5.64059 -0.29494 -0.03063 0.73429 1.15951 1.40296 1.50256 1.57282 1.87379 2.43685 3.16199 3.19578 3.45980 3.78711 3.96631 4.00725 4.23236 4.27447 4.45768 4.52329 4.58928 4.70339 4.84734 4.89400 4.91392 4.93445 4.99219 5.17753 5.17948 5.28851 5.38888 5.53858 5.57591 5.60951 5.67736 5.73824 6.38523 7.00369 7.62531 8.22537 9.00423 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.009241 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.581017 B = 3029.094210 C = 4387.955876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.014 4.014 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.259 4.259 8 H 0.058 0.942 9 N -0.558 5.558 10 C 0.334 3.666 11 N -0.502 5.502 12 C 0.067 3.933 13 C -0.107 4.107 14 S -0.070 6.070 15 C 0.337 3.663 16 S -0.639 6.639 17 C 0.151 3.849 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.109 4.109 21 C -0.126 4.126 22 H 0.259 0.741 23 H 0.116 0.884 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.154 0.846 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.103 0.651 7.262 9.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.213 4.213 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.389 4.389 8 H 0.075 0.925 9 N -0.276 5.276 10 C 0.124 3.876 11 N -0.204 5.204 12 C -0.059 4.059 13 C -0.257 4.257 14 S 0.160 5.840 15 C -0.038 4.038 16 S -0.509 6.509 17 C 0.045 3.955 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.165 4.165 22 H 0.068 0.932 23 H 0.133 0.867 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.132 0.868 27 H 0.160 0.840 28 H 0.172 0.828 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.938 -0.700 7.323 9.454 hybrid contribution -0.040 2.466 -0.654 2.551 sum 5.897 1.766 6.669 9.076 Atomic orbital electron populations 1.70067 1.06587 1.27155 1.51391 1.25794 0.95465 1.01103 0.98934 0.85495 0.78907 0.80380 0.77320 1.19507 1.22629 1.20141 1.19099 0.93189 0.85454 1.41117 0.92461 1.44484 1.49279 1.05196 1.28615 1.21835 0.88489 1.02736 0.74554 1.49975 1.44196 1.03468 1.22718 1.22245 1.01037 0.90202 0.92445 1.24754 1.08000 0.91744 1.01219 1.86928 1.63435 1.11389 1.22295 1.27715 0.88502 0.92409 0.95137 1.92854 1.66018 1.23567 1.68487 1.21632 0.94875 0.87752 0.91236 1.22555 0.97560 0.98722 0.96917 1.22389 0.99721 0.98774 0.94165 1.22197 0.95467 0.99102 0.97912 1.22409 0.97343 1.00332 0.96454 0.93158 0.86697 0.91792 0.87992 0.86831 0.84003 0.82839 0.91137 0.93151 0.94091 0.91471 0.90891 0.90923 0.92770 0.93403 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.31 11.41 21.65 0.25 -45.06 16 2 C -0.01 -0.65 5.01 84.86 0.42 -0.22 16 3 Si 0.95 37.88 29.60 68.60 2.03 39.91 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.30 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.26 -12.07 7.83 84.04 0.66 -11.41 16 8 H 0.06 2.78 6.82 -2.91 -0.02 2.76 16 9 N -0.56 -24.99 2.61 -685.65 -1.79 -26.78 16 10 C 0.33 14.32 5.52 170.96 0.94 15.26 16 11 N -0.50 -17.84 3.02 -721.23 -2.18 -20.02 16 12 C 0.07 1.76 6.80 86.89 0.59 2.35 16 13 C -0.11 -1.92 7.42 72.13 0.54 -1.38 16 14 S -0.07 -1.91 23.24 -56.49 -1.31 -3.23 16 15 C 0.34 12.52 7.47 130.06 0.97 13.49 16 16 S -0.64 -28.55 27.33 -56.49 -1.54 -30.09 16 17 C 0.15 6.49 3.28 45.71 0.15 6.64 16 18 C -0.12 -4.61 6.42 31.69 0.20 -4.41 16 19 C -0.11 -3.67 6.91 31.91 0.22 -3.45 16 20 C -0.11 -3.72 6.83 31.67 0.22 -3.50 16 21 C -0.13 -5.19 6.25 31.32 0.20 -4.99 16 22 H 0.26 12.46 8.32 -92.71 -0.77 11.69 16 23 H 0.12 5.27 5.46 -2.39 -0.01 5.25 16 24 H 0.06 3.02 6.76 -2.38 -0.02 3.00 16 25 H 0.10 2.91 8.14 -2.39 -0.02 2.90 16 26 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 3.29 5.58 -2.39 -0.01 3.28 16 30 H 0.05 2.08 6.53 -2.39 -0.02 2.06 16 31 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.05 2.36 7.23 -2.39 -0.02 2.34 16 Total: -1.00 -58.88 316.38 1.63 -57.26 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 1.06 Total: 19.62 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 5.11 Total: 8.38 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -3.72 Total: -91.86 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 16 Polarization: -30.46 SS G_CDS: -2.86 Total: -33.32 kcal Total: -58.88 1.63 -57.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153414623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.455 kcal (2) G-P(sol) polarization free energy of solvation -58.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds